RchiOBHm_Chr6g0305791

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013078
Physical Location & Seq
Forward (+)
64666823 .. 64669385
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27482

Sequence Viewer

Length: 648 bp
ATGGTGTTCTACTTCAAAGCCCGCCCCGAGGTCGGCGATTTCACCATCTTCATGGGCCTCGACAAGTTCGAGAACGAGGAGCTCATCAAATATGGCTTCCCCGAAGACATTTGGTTCCATGTGGATAAAATGTCGTCGGCCCATGTTTATGTTAGACTGCACAAAGGACAGACCATTGATGATATAAGTGAAGGTTTACTGGAGGATTGCGTTCAGCTTGTCAAAGCAAATTCCATCCAAGGCAACAAGGTGAACAATATCGATGTGGTTTATACTCCTTGGTCCAATTTGAAGAAGACTGCGTCCATGGATGTTGGTCAAGTTGGTTTCTACAGTTCAAAGATGGTTCGAACTGTGAGAGTGGAGAAGAGGATTAATGAGATTGTTAATAGACTGAACAGGACAAAAGTGGAAAGGAAACCTGATTTAAAAGCTGAGCGAGAAGCTGTTAACTCCGCAGAAAGAGATGAGAGAAAGCGGTTTCTGAGGGAGAAGAAACGGCGTGAGGAGTTGGAAAGGCTTGAAAAGGAGAAACAAGCAGAGCTGAGGAGCTATAAAGGCCTGATGGTTCATGAAAATATGACATCGAACAAACAAATTGCATCCGCAAACAAGTCATTGCAGGAATTGGAAGAGGACTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

215

Amino Acids

25.28

Weight (kDa)

8.48

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT-R_1 PF05670 1 - 111 2.5e-35 NFACT protein RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 22, 456, 478, 606
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 28, 32
AgsI TTSAA 4 cut(s) 16, 292, 339, 524
AluBI AGCT 6 cut(s) 82, 217, 434, 446, 544, 552
AluI AGCT 6 cut(s) 82, 217, 434, 446, 544, 552
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 55, 138, 559
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 55, 139, 282
AsuHPI GGTGA 2 cut(s) 34, 262
AsuII TTCGAA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 111, 302
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 545
BccI CCATC 4 cut(s) 53, 242, 337, 559
BceAI ACGGC 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 331
BlpI GCTNAGC 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 55, 139, 282
BmiI GGNNCC 1 cut(s) 116
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 2 cut(s) 111, 302
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 349
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 4 cut(s) 27, 238, 278, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 32
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 27, 238, 278, 306
BseGI GGATG 3 cut(s) 234, 316, 602
BseLI CCNNNNNNNGG 2 cut(s) 28, 32
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 3 cut(s) 426, 476, 536
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 3 cut(s) 92, 521, 562
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 3 cut(s) 57, 140, 561
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 28, 32
BsnI GGCC 3 cut(s) 57, 140, 561
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 4 cut(s) 22, 456, 478, 606
BspANI GGCC 3 cut(s) 57, 140, 561
BspCNI CTCAG 3 cut(s) 427, 477, 537
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 27, 238, 278, 306
BssT1I CCWWGG 3 cut(s) 238, 278, 306
Bst4CI ACNGT 2 cut(s) 335, 355
Bst6I CTCTTC 2 cut(s) 362, 627
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 435, 485, 545
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 234, 316, 602
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstSFI CTRYAG 1 cut(s) 331
BstV2I GAAGAC 2 cut(s) 111, 302
BstXI CCANNNNNNTGG 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 3 cut(s) 57, 140, 561
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 234, 316, 602
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 3 cut(s) 55, 139, 282
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 1 cut(s) 291
CviAII CATG 5 cut(s) 52, 119, 143, 307, 572
DdeI CTNAG 3 cut(s) 435, 485, 545
DraI TTTAAA 1 cut(s) 429
Eam1104I CTCTTC 2 cut(s) 362, 627
EarI CTCTTC 2 cut(s) 362, 627
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 3 cut(s) 238, 278, 306
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 238, 278, 306
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 3 cut(s) 238, 278, 306
FaeI CATG 5 cut(s) 55, 122, 146, 310, 575
FatI CATG 5 cut(s) 51, 118, 142, 306, 571
FauI CCCGC 1 cut(s) 29
FokI GGATG 3 cut(s) 221, 323, 589
FriOI GRGCYC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 3 cut(s) 57, 140, 561
HgaI GACGC 1 cut(s) 291
Hin1II CATG 5 cut(s) 55, 122, 146, 310, 575
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HpaI GTTAAC 1 cut(s) 451
HphI GGTGA 2 cut(s) 34, 262
Hpy166II GTNNAC 3 cut(s) 197, 253, 451
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 2 cut(s) 70, 572
Hpy8I GTNNAC 3 cut(s) 197, 253, 451
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 335, 355
HpyCH4V TGCA 3 cut(s) 160, 602, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 3 cut(s) 435, 485, 545
Hsp92II CATG 5 cut(s) 55, 122, 146, 310, 575
KspAI GTTAAC 1 cut(s) 451
LmnI GCTCC 2 cut(s) 79, 549
LpnPI CCDG 5 cut(s) 185, 385, 435, 575, 608
LweI GCATC 1 cut(s) 611
MboII GAAGA 7 cut(s) 40, 116, 304, 307, 379, 505, 644
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 4 cut(s) 229, 286, 597, 626
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 22, 68, 70, 196, 363, 480, 499, 540, 628
MseI TTAA 4 cut(s) 375, 387, 428, 450
MslI CAYNNNNRTG 2 cut(s) 50, 147
MwoI GCNNNNNNNGC 1 cut(s) 558
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 5 cut(s) 55, 122, 146, 310, 575
NlaIV GGNNCC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 349
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 3 cut(s) 55, 139, 282
PsyI GACNNNGTC 1 cut(s) 301
RseI CAYNNNNRTG 2 cut(s) 50, 147
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 375, 387, 428, 450
Sau96I GGNCC 3 cut(s) 55, 139, 282
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 331
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 50, 147
Sse9I AATT 4 cut(s) 229, 286, 597, 626
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 4 cut(s) 22, 456, 478, 606
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 561
StyI CCWWGG 3 cut(s) 238, 278, 306
TaaI ACNGT 2 cut(s) 335, 355
TaqI TCGA 5 cut(s) 60, 69, 261, 349, 587
TasI AATT 4 cut(s) 229, 286, 597, 626
Tru1I TTAA 4 cut(s) 375, 387, 428, 450
Tru9I TTAA 4 cut(s) 375, 387, 428, 450
TspDTI ATGAA 3 cut(s) 40, 560, 588
Tth111I GACNNNGTC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.