Prupe.1G452200_v2.0.a1

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013078
Physical Location & Seq
Reverse (-)
38050526 .. 38053380
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G452200.2

Sequence Viewer

Length: 681 bp
ATGGTCTTCTACTTCAAAGCTCGATCCGAGGTTGGCGATTACACCATTTTCATGGGGCTCGACAAGTTCGAGAACGAGGAGCTCATCAAATATGGCTTCCCCGAAGACATTTGGTTCCATGTGGATAAAATGTCTTCTGCCCATGTTTATGTTAGACTGCACAAAGGACAGACCATTGATGGTATAAGTGAAGGTTTACTGGAGGACTGCGCACAGCTTGTCAAAGCAAATTCCATCCAAGGCAACAAGGTGAACAATGTCGATGTTGTTTACACTCCCTGGTCCAATTTGAAGAAAACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCTACAATTCAAAGATGGTTCGAACTGTGAGAGTGGAGAAGCGGATTAATGAGGTAGTTAATAGATTGAACAGGACAAAAGTGGAAAGGAAGCCTGATTTAAAAGCTGAGCGAGAAGCGGTCAATGCAGCAGAAAGAGCTGAGAGAAAGCAGCTGCTGAGGGACAAGGTAAGTTCCTCCTCCTCCCTTGGCCAATATGAGAAACGACGTGAGGAGATGGAAAGGCTTGAGAAGGAGAGACAAGCAGAGCTAAGGAGCTACAAAGGTTTGATGGTTTCTGAAAATATGACATCTAACAAACAAATTGCATCGGCAAACAAGTCATTGCAGGAACTGGAAGAGGACTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

227

Amino Acids

26.19

Weight (kDa)

8.46

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 211
AciI CCGC 2 cut(s) 370, 446
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 229
AgsI TTSAA 4 cut(s) 16, 292, 339, 397
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 8 cut(s) 20, 82, 217, 434, 467, 481, 577, 585
AluI AGCT 8 cut(s) 20, 82, 217, 434, 467, 481, 577, 585
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 2 cut(s) 484, 661
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 3 cut(s) 455, 478, 481
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 282
BalI TGGCCA 1 cut(s) 519
BanII GRGCYC 2 cut(s) 60, 84
BbsI GAAGAC 2 cut(s) 111, 126
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 467, 468, 490
BccI CCATC 5 cut(s) 173, 242, 337, 538, 592
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 559
BisI GCNGC 3 cut(s) 456, 479, 482
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 3 cut(s) 457, 480, 483
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 111, 126
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 485, 578
Bpu1102I GCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 575
BsaJI CCNNGG 5 cut(s) 27, 238, 278, 306, 514
Bse1I ACTGG 2 cut(s) 204, 666
Bse3DI GCAATG 1 cut(s) 650
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 5 cut(s) 27, 238, 278, 306, 514
BseGI GGATG 2 cut(s) 234, 316
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 3 cut(s) 426, 459, 476
BseNI ACTGG 2 cut(s) 204, 666
BseRI GAGGAG 4 cut(s) 92, 496, 499, 554
BseXI GCAGC 3 cut(s) 467, 468, 490
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 60, 84
Bsp143I GATC 1 cut(s) 23
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 370, 446
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 3 cut(s) 427, 460, 477
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 2 cut(s) 204, 666
BssECI CCNNGG 5 cut(s) 27, 238, 278, 306, 514
BssMI GATC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 238, 306, 514
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 660
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 4 cut(s) 435, 468, 485, 578
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 234, 316
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 452, 464
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 467, 468, 490
BstV2I GAAGAC 2 cut(s) 111, 126
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 2 cut(s) 234, 316
CaiI CAGNNNCTG 2 cut(s) 484, 661
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 282
CviAII CATG 5 cut(s) 52, 119, 143, 307, 676
DdeI CTNAG 4 cut(s) 435, 468, 485, 578
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 3 cut(s) 238, 306, 514
Eco24I GRGCYC 2 cut(s) 60, 84
Eco47I GGWCC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 3 cut(s) 238, 306, 514
EcoT38I GRGCYC 2 cut(s) 60, 84
ErhI CCWWGG 3 cut(s) 238, 306, 514
FaeI CATG 5 cut(s) 55, 122, 146, 310, 679
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 51, 118, 142, 306, 675
Fnu4HI GCNGC 3 cut(s) 456, 479, 482
FokI GGATG 2 cut(s) 221, 323
FriOI GRGCYC 2 cut(s) 60, 84
Fsp4HI GCNGC 3 cut(s) 456, 479, 482
FspI TGCGCA 1 cut(s) 211
GlaI GCGC 1 cut(s) 211
GluI GCNGC 3 cut(s) 456, 479, 482
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 519
HhaI GCGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 55, 122, 146, 310, 679
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 197, 253, 271
Hpy188I TCNGA 2 cut(s) 28, 607
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 197, 253, 271
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 2 cut(s) 185, 553
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 4 cut(s) 160, 455, 635, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 464
HpyF3I CTNAG 4 cut(s) 435, 468, 485, 578
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 5 cut(s) 55, 122, 146, 310, 679
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 79, 582
LpnPI CCDG 7 cut(s) 185, 265, 292, 385, 435, 641, 647
Lsp1109I GCAGC 3 cut(s) 467, 468, 490
LweI GCATC 1 cut(s) 644
MaeII ACGT 1 cut(s) 535
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 4 cut(s) 116, 126, 304, 677
MhlI GDGCHC 2 cut(s) 60, 84
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 4 cut(s) 229, 286, 334, 630
MluNI TGGCCA 1 cut(s) 519
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 3 cut(s) 375, 387, 428
MslI CAYNNNNRTG 2 cut(s) 50, 147
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 452, 464
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 23
NlaIII CATG 5 cut(s) 55, 122, 146, 310, 679
NlaIV GGNNCC 1 cut(s) 116
NsbI TGCGCA 1 cut(s) 211
NspV TTCGAA 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 3 cut(s) 457, 480, 483
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 2 cut(s) 484, 661
PvuII CAGCTG 1 cut(s) 481
RseI CAYNNNNRTG 2 cut(s) 50, 147
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 375, 387, 428
SatI GCNGC 3 cut(s) 456, 479, 482
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 2 cut(s) 60, 84
SfaNI GCATC 1 cut(s) 644
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 50, 147
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 4 cut(s) 229, 286, 334, 630
SsiI CCGC 2 cut(s) 370, 446
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 3 cut(s) 238, 306, 514
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 538
TaqI TCGA 5 cut(s) 22, 60, 69, 261, 349
TasI AATT 4 cut(s) 229, 286, 334, 630
Tru1I TTAA 3 cut(s) 375, 387, 428
Tru9I TTAA 3 cut(s) 375, 387, 428
TseI GCWGC 3 cut(s) 455, 478, 481
TspDTI ATGAA 2 cut(s) 40, 664
VpaK11BI GGWCC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.