FvH4_2g36060

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013078
Physical Location & Seq
Reverse (-)
26478887 .. 26480457
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36060.t1

Sequence Viewer

Length: 648 bp
ATGGTGTTCTACTTCAAAGCCCGCCCCGAGGTCGGCGATTTCACCATCTTCATGGGCCTCGACAAGTTCGAGAACGAGGAGCTCATCAAATACGGCTTCCCCGAAGACATTTGGTTTCATGTGGACAAAATGTCGTCGGCCCATGTTTATGTTAGGCTGCACAAAGGGCAGACCATTGATGATATAAGTGAAGGTTTACTGGAGGATTGCGTGCAGCTTGTCAAAGCAAATTCCATCCAAGGTAACAAGGTGAATAATATTGATGTTGTTTACACTCCTTGGTCCAACTTGAAGAAGACTGCATCCATGGATGTTGGTCAAGTTGGTTTCTACAGTTCAAAGATGGTTCGGACTGTGAGAGTGGAGAAGAGGATTAATGAGATCGTTAATAGACTGAACAGGACAAAAGTGGAAAGGAAACCCGATTTAAAAGCTGAGAGAGAAGCGGTTAACTCTGCAGAAAGAGATGAGAGAAAGCGGTTTCTGAGAGAGAAGAAACGTCGTGAGGAGTTGGAAAGGCTTGAAAAGGAAAAACAAGCAGAGCTGAGGAGCTATAAAGGCTTGATGGTTCATGAAAATATGACATCCAACAAACAAATTGCATCTGCAAACAAGTCATTGCAGGAATTGGAAGAGGACTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

216

Amino Acids

25.28

Weight (kDa)

8.48

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT-R_1 PF05670 1 - 111 2.5e-35 NFACT protein RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 22, 446, 478
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 28, 32
AgsI TTSAA 4 cut(s) 16, 292, 339, 524
AhdI GACNNNNNGTC 1 cut(s) 130
AluBI AGCT 5 cut(s) 82, 217, 434, 544, 552
AluI AGCT 5 cut(s) 82, 217, 434, 544, 552
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 55, 138
ApeKI GCWGC 2 cut(s) 157, 214
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 55, 139, 282
AsuHPI GGTGA 2 cut(s) 34, 262
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 111, 302
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 144, 226
BccI CCATC 4 cut(s) 53, 242, 337, 559
BceAI ACGGC 1 cut(s) 109
BfmI CTRYAG 2 cut(s) 331, 456
BisI GCNGC 2 cut(s) 158, 215
BlsI GCNGC 2 cut(s) 159, 216
Bme18I GGWCC 1 cut(s) 282
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 55, 139, 282
BmsI GCATC 2 cut(s) 311, 611
BpiI GAAGAC 2 cut(s) 111, 302
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 545
BsaJI CCNNGG 4 cut(s) 27, 238, 278, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 32
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 617
BseDI CCNNGG 4 cut(s) 27, 238, 278, 306
BseGI GGATG 4 cut(s) 234, 302, 316, 584
BseLI CCNNNNNNNGG 2 cut(s) 28, 32
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 3 cut(s) 426, 476, 536
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 3 cut(s) 92, 521, 562
BseXI GCAGC 2 cut(s) 144, 226
BsgI GTGCAG 2 cut(s) 143, 233
BshFI GGCC 2 cut(s) 57, 140
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 28, 32
BsnI GGCC 2 cut(s) 57, 140
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 3 cut(s) 22, 446, 478
BspANI GGCC 2 cut(s) 57, 140
BspCNI CTCAG 3 cut(s) 427, 477, 537
BspHI TCATGA 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 27, 238, 278, 306
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 3 cut(s) 238, 278, 306
Bst4CI ACNGT 2 cut(s) 335, 355
Bst6I CTCTTC 2 cut(s) 362, 627
BstC8I GCNNGC 2 cut(s) 22, 212
BstDEI CTNAG 3 cut(s) 435, 485, 545
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 4 cut(s) 234, 302, 316, 584
BstKTI GATC 1 cut(s) 384
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 2 cut(s) 166, 558
BstSFI CTRYAG 2 cut(s) 331, 456
BstV1I GCAGC 2 cut(s) 144, 226
BstV2I GAAGAC 2 cut(s) 111, 302
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 57, 140
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 4 cut(s) 234, 302, 316, 584
Cac8I GCNNGC 2 cut(s) 22, 212
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 3 cut(s) 55, 139, 282
CviAII CATG 5 cut(s) 52, 119, 143, 307, 572
DdeI CTNAG 3 cut(s) 435, 485, 545
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
DraI TTTAAA 1 cut(s) 429
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 362, 627
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 2 cut(s) 362, 627
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 3 cut(s) 238, 278, 306
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 238, 278, 306
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 3 cut(s) 238, 278, 306
FaeI CATG 5 cut(s) 55, 122, 146, 310, 575
FatI CATG 5 cut(s) 51, 118, 142, 306, 571
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 158, 215
FokI GGATG 4 cut(s) 221, 289, 323, 571
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 158, 215
GluI GCNGC 2 cut(s) 158, 215
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 57, 140
Hin1II CATG 5 cut(s) 55, 122, 146, 310, 575
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HpaI GTTAAC 1 cut(s) 451
HphI GGTGA 2 cut(s) 34, 262
Hpy166II GTNNAC 4 cut(s) 124, 197, 271, 451
Hpy188I TCNGA 2 cut(s) 351, 486
Hpy188III TCNNGA 3 cut(s) 70, 503, 572
Hpy8I GTNNAC 4 cut(s) 124, 197, 271, 451
Hpy99I CGWCG 2 cut(s) 139, 504
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 335, 355
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 7 cut(s) 160, 214, 302, 458, 602, 608, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 558
HpyF3I CTNAG 3 cut(s) 435, 485, 545
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 5 cut(s) 55, 122, 146, 310, 575
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 79, 549
LpnPI CCDG 3 cut(s) 185, 385, 608
Lsp1109I GCAGC 2 cut(s) 144, 226
LweI GCATC 2 cut(s) 311, 611
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 7 cut(s) 40, 116, 304, 307, 379, 505, 644
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 229, 597, 626
MmeI TCCRAC 3 cut(s) 309, 492, 612
MnlI CCTC 8 cut(s) 22, 68, 70, 196, 363, 499, 540, 628
MseI TTAA 4 cut(s) 375, 387, 428, 450
MslI CAYNNNNRTG 2 cut(s) 50, 147
MwoI GCNNNNNNNGC 2 cut(s) 166, 558
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 381
NlaIII CATG 5 cut(s) 55, 122, 146, 310, 575
PagI TCATGA 1 cut(s) 571
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 99
PkrI GCNGC 2 cut(s) 159, 216
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 55, 139, 282
PstI CTGCAG 1 cut(s) 460
RseI CAYNNNNRTG 2 cut(s) 50, 147
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 375, 387, 428, 450
SatI GCNGC 2 cut(s) 158, 215
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 3 cut(s) 55, 139, 282
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 2 cut(s) 311, 611
SfcI CTRYAG 2 cut(s) 331, 456
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 50, 147
Sse9I AATT 3 cut(s) 229, 597, 626
SsiI CCGC 3 cut(s) 22, 446, 478
SspI AATATT 1 cut(s) 259
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 3 cut(s) 238, 278, 306
TaaI ACNGT 2 cut(s) 335, 355
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 60, 69
TasI AATT 3 cut(s) 229, 597, 626
Tru1I TTAA 4 cut(s) 375, 387, 428, 450
Tru9I TTAA 4 cut(s) 375, 387, 428, 450
TseI GCWGC 2 cut(s) 157, 214
TspDTI ATGAA 4 cut(s) 40, 107, 560, 588
VpaK11BI GGWCC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.