MD15G1097400.v1.1

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013078
Physical Location & Seq
Reverse (-)
6779567 .. 6782135
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1097400.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGTGTTCTACTTCAAAGCGCGATCGGACGTGGGCGATTTCACCATTTTCATGGGCCTCGACAAGTTCGAGAACGAGGAGCTCATCAAATATGGCTTCCCCGAAGACATTTGGTTCCATGTGGACAAAATGTCTTCCGCCCATGTTTATGTTAGGCTGCACAAAGGACAGACCATCGATGATATAAGTGAAGGTTTACTGGAGGATTGCGCTCAGCTTGTCAAAGCAAATTCCATCCAAGGCAACAAGGTAAACAATGTTGATGTTGTTTACACTCCCTGGTCCAATTTGAAGAAAAGTGCCTCCATGGATGTTGGTCAAGTTGGTTTCTACAATTCGAAGAATGTTCGGACTGTGAGGGTGGAGAAGCGGATCAATGAGGTAGTTAATAGATTGAACAGGACAAAAGTAGAAAGGAAGCCTGATTTGAAAGCTGAGCGAGAAGCTGTTAATGCAGCCGAAAGAGCTGAGAGAAAGCAGTTCCTGAGGGACAAGAAACGACGGGAGGAGATGGAAAGGCTTGAGAAGGAGAGACAATTGGAACTAAGGAGCTACAAAGGTTTGATGAATTCTGAAAATATGACATCTAACAAACAAATTGCATCGACAAACAAGTCATTGCAGGAACTGGAAGAGGACTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

216

Amino Acids

25.18

Weight (kDa)

8.49

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT-R_1 PF05670 1 - 112 5.4e-36 NFACT protein RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 613
AccII CGCG 1 cut(s) 22
AciI CCGC 2 cut(s) 138, 370
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 229, 568
AgsI TTSAA 4 cut(s) 16, 292, 397, 430
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 6 cut(s) 82, 217, 434, 446, 467, 552
AluI AGCT 6 cut(s) 82, 217, 434, 446, 467, 552
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 380
AlwNI CAGNNNCTG 2 cut(s) 484, 628
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 157, 455
ApoI RAATTY 2 cut(s) 229, 568
AspLEI GCGC 2 cut(s) 22, 212
AspS9I GGNCC 2 cut(s) 55, 282
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 282
AxyI CCTNAGG 1 cut(s) 485
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 111, 126
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 144, 467
BccI CCATC 3 cut(s) 182, 242, 505
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 526
BisI GCNGC 2 cut(s) 158, 456
BlpI GCTNAGC 2 cut(s) 213, 435
BlsI GCNGC 2 cut(s) 159, 457
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 282
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 55, 282
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 2 cut(s) 111, 126
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 2 cut(s) 213, 435
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 238, 278, 306
Bse1I ACTGG 2 cut(s) 204, 633
Bse21I CCTNAGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 617
BseBI CCWGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 238, 278, 306
BseGI GGATG 2 cut(s) 234, 316
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 4 cut(s) 227, 426, 459, 476
BseNI ACTGG 2 cut(s) 204, 633
BseRI GAGGAG 2 cut(s) 92, 521
BseXI GCAGC 2 cut(s) 144, 467
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 23, 372
Bsp1720I GCTNAGC 2 cut(s) 213, 435
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 138, 370
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 4 cut(s) 226, 427, 460, 477
BspDI ATCGAT 1 cut(s) 177
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 2 cut(s) 204, 633
BssECI CCNNGG 3 cut(s) 238, 278, 306
BssMI GATC 2 cut(s) 23, 372
BssT1I CCWWGG 2 cut(s) 238, 306
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 338
BstDEI CTNAG 5 cut(s) 213, 435, 468, 485, 545
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 234, 316
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 2 cut(s) 22, 212
BstKTI GATC 2 cut(s) 26, 375
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 2 cut(s) 23, 372
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 452, 464
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 144, 467
BstV2I GAAGAC 2 cut(s) 111, 126
BstXI CCANNNNNNTGG 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 234, 316
CaiI CAGNNNCTG 2 cut(s) 484, 628
CfoI GCGC 2 cut(s) 22, 212
Cfr13I GGNCC 2 cut(s) 55, 282
ClaI ATCGAT 1 cut(s) 177
CviAII CATG 5 cut(s) 52, 119, 143, 307, 643
DdeI CTNAG 5 cut(s) 213, 435, 468, 485, 545
DpnI GATC 2 cut(s) 25, 374
DpnII GATC 2 cut(s) 23, 372
DrdI GACNNNNNNGTC 1 cut(s) 613
DriI GACNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 627
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 238, 306
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 2 cut(s) 238, 306
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 238, 306
FaeI CATG 5 cut(s) 55, 122, 146, 310, 646
FaiI YATR 9 cut(s) 53, 93, 120, 144, 150, 185, 308, 581, 644
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 51, 118, 142, 306, 642
Fnu4HI GCNGC 2 cut(s) 158, 456
FokI GGATG 2 cut(s) 221, 323
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 158, 456
GlaI GCGC 2 cut(s) 21, 211
GluI GCNGC 2 cut(s) 158, 456
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 57
HhaI GCGC 2 cut(s) 22, 212
Hin1II CATG 5 cut(s) 55, 122, 146, 310, 646
Hin6I GCGC 2 cut(s) 20, 210
HinP1I GCGC 2 cut(s) 20, 210
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 4 cut(s) 124, 197, 253, 271
Hpy188I TCNGA 3 cut(s) 28, 351, 574
Hpy188III TCNNGA 2 cut(s) 70, 484
Hpy8I GTNNAC 4 cut(s) 124, 197, 253, 271
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 185, 520
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 160, 455, 602, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 464
HpyF3I CTNAG 5 cut(s) 213, 435, 468, 485, 545
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 5 cut(s) 55, 122, 146, 310, 646
HspAI GCGC 2 cut(s) 20, 210
Kzo9I GATC 2 cut(s) 23, 372
LmnI GCTCC 2 cut(s) 79, 549
LpnPI CCDG 8 cut(s) 185, 265, 292, 385, 435, 497, 608, 614
Lsp1109I GCAGC 2 cut(s) 144, 467
LweI GCATC 1 cut(s) 611
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 25, 374
MboI GATC 2 cut(s) 23, 372
MboII GAAGA 5 cut(s) 116, 126, 304, 352, 644
MfeI CAATTG 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 229, 286, 334, 536, 568, 597
MnlI CCTC 9 cut(s) 68, 70, 196, 313, 351, 373, 480, 499, 628
MseI TTAA 2 cut(s) 387, 450
MslI CAYNNNNRTG 2 cut(s) 50, 147
MspR9I CCNGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 452, 464
NcoI CCATGG 1 cut(s) 306
NdeII GATC 2 cut(s) 23, 372
NlaIII CATG 5 cut(s) 55, 122, 146, 310, 646
NlaIV GGNNCC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 2 cut(s) 159, 457
Ple19I CGATCG 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 55, 282
PstNI CAGNNNCTG 2 cut(s) 484, 628
PvuI CGATCG 1 cut(s) 26
RseI CAYNNNNRTG 2 cut(s) 50, 147
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 387, 450
SatI GCNGC 2 cut(s) 158, 456
Sau3AI GATC 2 cut(s) 23, 372
Sau96I GGNCC 2 cut(s) 55, 282
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 1 cut(s) 611
SfuI TTCGAA 1 cut(s) 338
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 50, 147
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 6 cut(s) 229, 286, 334, 536, 568, 597
SsiI CCGC 2 cut(s) 138, 370
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 2 cut(s) 238, 306
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 33
TaqI TCGA 5 cut(s) 60, 69, 177, 338, 605
TasI AATT 6 cut(s) 229, 286, 334, 536, 568, 597
Tru1I TTAA 2 cut(s) 387, 450
Tru9I TTAA 2 cut(s) 387, 450
TseI GCWGC 2 cut(s) 157, 455
TspDTI ATGAA 3 cut(s) 40, 581, 631
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 2 cut(s) 229, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.