Rroxscaffold_7G00162330

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013078
Physical Location & Seq
Reverse (-)
4891432 .. 4893715
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162330.1

Sequence Viewer

Length: 600 bp
ATGGTGTTCTACTTCAAAGCCCGCCCGGAGGTCGGCGATTTCACCATCTTCATGGGCCTCGACAAGTTCGAGAACGAGGAGCTCATCAAATATGGCTTCCCCGAAGACATTTGGTTCCATGTGGATAAAATGTCGTCGGCCCATGTTTATGTTAGACTGCACAAAGGACAGACCATTGATGATATAAGTGAAGGCAACAAGGTGAATAATATTGATGTGGTTTATACTCCTTGGTCCAATTTGAAGAAGACTGCGTCCATGGATGTTGGTCAAGTTGGTTTCTACAGTTCAAAGATGGTCCGAACTGTGAGAGTGGAGAAGAGGATTAATGAGATTGTTAATAGACTGAACAGGACAAAAGTGGAAAGGAAACCTGATTTAAAAGCTGAGCGAGAAGCTGTTAACTCCGCAGAAAGAGATGAGAGAAAGCGGTTTCTGAGGGAGAAGAAACGGCGTGAGGAGTTGGAAAGGCTTGAAAAGGAGAAACAAGCAGAGCTGAGGAGCTATAAAGGCCTGATGGTTCATGAAAATATGACATCCAACAAACAAATTGCATCCGCAAACAAGTCATTGCAGGAATTGGAAGAGGACTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF814

Protein Analysis

199

Amino Acids

23.57

Weight (kDa)

8.9

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT-R_1 PF05670 1 - 95 1.5e-22 NFACT protein RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013078)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11500 AT5G11500
fragaria_vesca FvH4_2g36060
malus_domestica MD08G1117900.v1.1 MD15G1097400.v1.1
prunus_persica Prupe.1G452200_v2.0.a1 Prupe.1G452200_v2.0.a1
pyrus_communis pycom08g09850 pycom15g08930
rosa_chinensis RchiOBHm_Chr6g0305791
rosa_laevigata RLG00000010858
rosa_roxburghii Rroxscaffold_7G00162330
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455600 Rh6BG445500 Rh6CG469600 Rh6DG456300
rosa_wichuraiana Rw6G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 22, 408, 430, 558
AfiI CCNNNNNNNGG 2 cut(s) 28, 32
AgsI TTSAA 4 cut(s) 16, 244, 291, 476
AluBI AGCT 5 cut(s) 82, 386, 398, 496, 504
AluI AGCT 5 cut(s) 82, 386, 398, 496, 504
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 3 cut(s) 55, 138, 511
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 4 cut(s) 55, 139, 234, 298
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 34, 214
AvaII GGWCC 2 cut(s) 234, 298
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 111, 254
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 497
BccI CCATC 3 cut(s) 53, 289, 511
BceAI ACGGC 1 cut(s) 467
BcnI CCSGG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 283
BlpI GCTNAGC 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 234, 298
BmgT120I GGNCC 4 cut(s) 55, 139, 234, 298
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 2 cut(s) 111, 254
Bpu10I CCTNAGC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 230, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 32
Bse3DI GCAATG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 230, 258
BseGI GGATG 3 cut(s) 268, 536, 554
BseLI CCNNNNNNNGG 2 cut(s) 28, 32
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 3 cut(s) 378, 428, 488
BseRI GAGGAG 3 cut(s) 92, 473, 514
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 3 cut(s) 57, 140, 513
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 28, 32
BsnI GGCC 3 cut(s) 57, 140, 513
Bsp1286I GDGCHC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 4 cut(s) 22, 408, 430, 558
BspANI GGCC 3 cut(s) 57, 140, 513
BspCNI CTCAG 3 cut(s) 379, 429, 489
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 230, 258
BssT1I CCWWGG 2 cut(s) 230, 258
Bst4CI ACNGT 2 cut(s) 287, 307
Bst6I CTCTTC 2 cut(s) 314, 579
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 387, 437, 497
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 3 cut(s) 268, 536, 554
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 283
BstV2I GAAGAC 2 cut(s) 111, 254
BstXI CCANNNNNNTGG 1 cut(s) 52
BsuRI GGCC 3 cut(s) 57, 140, 513
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 268, 536, 554
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 55, 139, 234, 298
CseI GACGC 1 cut(s) 243
CviAII CATG 5 cut(s) 52, 119, 143, 259, 524
DdeI CTNAG 3 cut(s) 387, 437, 497
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 314, 579
EarI CTCTTC 2 cut(s) 314, 579
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 230, 258
Eco147I AGGCCT 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 234, 298
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 230, 258
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 230, 258
FaeI CATG 5 cut(s) 55, 122, 146, 262, 527
FatI CATG 5 cut(s) 51, 118, 142, 258, 523
FauI CCCGC 1 cut(s) 29
FokI GGATG 3 cut(s) 275, 523, 541
FriOI GRGCYC 1 cut(s) 84
HaeIII GGCC 3 cut(s) 57, 140, 513
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 243
Hin1II CATG 5 cut(s) 55, 122, 146, 262, 527
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 34, 214
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 2 cut(s) 302, 438
Hpy188III TCNNGA 2 cut(s) 70, 524
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 287, 307
HpyCH4V TGCA 3 cut(s) 160, 554, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 3 cut(s) 387, 437, 497
Hsp92II CATG 5 cut(s) 55, 122, 146, 262, 527
KspAI GTTAAC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 79, 501
LpnPI CCDG 5 cut(s) 39, 337, 387, 527, 560
LweI GCATC 1 cut(s) 563
MboII GAAGA 7 cut(s) 40, 116, 256, 259, 331, 457, 596
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 238, 549, 578
MmeI TCCRAC 2 cut(s) 444, 564
MnlI CCTC 8 cut(s) 22, 68, 70, 315, 432, 451, 492, 580
MseI TTAA 4 cut(s) 327, 339, 380, 402
MslI CAYNNNNRTG 2 cut(s) 50, 147
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 258
NlaIII CATG 5 cut(s) 55, 122, 146, 262, 527
NlaIV GGNNCC 1 cut(s) 116
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 4 cut(s) 55, 139, 234, 298
PsyI GACNNNGTC 1 cut(s) 253
RseI CAYNNNNRTG 2 cut(s) 50, 147
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 327, 339, 380, 402
Sau96I GGNCC 4 cut(s) 55, 139, 234, 298
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 33, 84, 204, 376, 388, 400, 498, 506
SfaNI GCATC 1 cut(s) 563
SfcI CTRYAG 1 cut(s) 283
SinI GGWCC 2 cut(s) 234, 298
SmiMI CAYNNNNRTG 2 cut(s) 50, 147
Sse9I AATT 3 cut(s) 238, 549, 578
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 4 cut(s) 22, 408, 430, 558
SspI AATATT 1 cut(s) 211
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 2 cut(s) 230, 258
TaaI ACNGT 2 cut(s) 287, 307
TaqI TCGA 2 cut(s) 60, 69
TasI AATT 3 cut(s) 238, 549, 578
Tru1I TTAA 4 cut(s) 327, 339, 380, 402
Tru9I TTAA 4 cut(s) 327, 339, 380, 402
TspDTI ATGAA 3 cut(s) 40, 512, 540
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 234, 298
VspI ATTAAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.