AT5G11600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010821
Physical Location & Seq
Reverse (-)
3733635 .. 3735265
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11600.1

Sequence Viewer

Length: 729 bp
ATGGCGACACAGGAGAGACCTAGTTCAGCTAAGAGCGAGCCACGCGATGCGTCTTCTTCTCTTTCTTCCAGAGTCAAGATCGATCCGTCTATTAAGGACAAAAAGAAGATCGCGACCTCTAGCAGACCGATCATGTCGGATTCTAAACCCAGATCCTCTGTTTCTACCGTCACGGCGAAATCCGAGGCAAAGCCCAAAGTACCTATAAATTCAGTGAAAACCATAGCAACAACATCTGCAGCAGCGAGCTTGGTGAAAGGGAAAGCGCAAACAACATCTACAGTAGTGAGCTTGGTGAAAGCGAAAACAACATCTGCAACAGTAAGCTTGGTGAAAGGGAAAGCGAAAAGAGAGAAGAAGGTTTATTCATTAGCTGGACAAAAGTTTGATCCTCCTGAAGAGAGAGAGCCCTTGAGGATATTCTATGAATCCTTGTCGAAACAAATACCTGGGAGTGAAATGGCTGAGTTCTGGCTTATGGAACATGGTATGTTGTCTCCCGAAAAGGCGAAGCGAGCCTTTGAGAAAAAGCAGAGAAAAATGAAGCAAATTCGAATGGGGACACCGAGTAAATCGGCACCAACGTTTTCTAGTAAAGCGGAGAGTTCTCAAAGAACATCTGCATCCAAGAACAACGGTTTAGATGCGAGAAAGAAGAAGAAAGTCGTCGATGATGATGACGATGATGATGATGATTTCATCCTAAGCCACAAGAGAAGGAAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.58

Weight (kDa)

10.1

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 577
AccII CGCG 2 cut(s) 45, 113
AciI CCGC 1 cut(s) 599
AclI AACGTT 1 cut(s) 584
AclWI GGATC 3 cut(s) 77, 147, 383
AcsI RAATTY 2 cut(s) 208, 549
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 201
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 5 cut(s) 29, 249, 291, 327, 374
AluI AGCT 5 cut(s) 29, 249, 291, 327, 374
Alw26I GTCTC 2 cut(s) 10, 501
AlwI GGATC 3 cut(s) 77, 147, 383
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 2 cut(s) 208, 549
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 265, 307, 343
AsuII TTCGAA 1 cut(s) 553
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 251, 254
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 10, 501
BfaI CTAG 3 cut(s) 21, 120, 591
BfmI CTRYAG 2 cut(s) 237, 279
BisI GCNGC 2 cut(s) 240, 243
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 37, 632, 634
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 433
Bsa29I ATCGAT 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 183, 449
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 183, 449
BseGI GGATG 2 cut(s) 623, 699
BseMII CTCAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 251, 254
Bsh1236I CGCG 2 cut(s) 45, 113
BshNI GGYRCC 1 cut(s) 577
BshVI ATCGAT 1 cut(s) 81
BslFI GGGAC 1 cut(s) 574
BsmAI GTCTC 2 cut(s) 10, 501
BsmFI GGGAC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 6 cut(s) 78, 82, 108, 129, 152, 388
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 457
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 2 cut(s) 45, 113
BspLI GGNNCC 1 cut(s) 579
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 3 cut(s) 77, 147, 383
BspT104I TTCGAA 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 183, 449
BssMI GATC 6 cut(s) 78, 82, 108, 129, 152, 388
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 4 cut(s) 169, 283, 322, 638
Bst6I CTCTTC 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 3 cut(s) 38, 247, 516
BstDEI CTNAG 3 cut(s) 30, 465, 704
BstF5I GGATG 2 cut(s) 623, 699
BstFNI CGCG 2 cut(s) 45, 113
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 6 cut(s) 81, 85, 111, 132, 155, 391
BstMAI GTCTC 2 cut(s) 10, 501
BstMBI GATC 6 cut(s) 78, 82, 108, 129, 152, 388
BstMWI GCNNNNNNNGC 2 cut(s) 42, 515
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 2 cut(s) 237, 279
BstUI CGCG 2 cut(s) 45, 113
BstV1I GCAGC 2 cut(s) 251, 254
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 623, 699
BtsIMutI CAGTG 1 cut(s) 219
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 38, 247, 516
CfoI GCGC 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 133, 485
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 30, 465, 704
DpnI GATC 6 cut(s) 80, 84, 110, 131, 154, 390
DpnII GATC 6 cut(s) 78, 82, 108, 129, 152, 388
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 2 cut(s) 136, 488
FaiI YATR 7 cut(s) 134, 206, 224, 426, 479, 486, 491
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 574
FatI CATG 2 cut(s) 132, 484
Fnu4HI GCNGC 2 cut(s) 240, 243
FokI GGATG 2 cut(s) 610, 686
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 3 cut(s) 21, 120, 591
GlaI GCGC 1 cut(s) 267
GluI GCNGC 2 cut(s) 240, 243
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 136, 488
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 3 cut(s) 72, 140, 428
HphI GGTGA 3 cut(s) 265, 307, 343
Hpy188I TCNGA 2 cut(s) 139, 184
Hpy188III TCNNGA 5 cut(s) 69, 76, 112, 395, 500
Hpy99I CGWCG 1 cut(s) 671
HpyAV CCTTC 2 cut(s) 352, 711
HpyCH4III ACNGT 4 cut(s) 169, 283, 322, 638
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 3 cut(s) 239, 317, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 515
HpyF3I CTNAG 3 cut(s) 30, 465, 704
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 2 cut(s) 136, 488
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 6 cut(s) 78, 82, 108, 129, 152, 388
LpnPI CCDG 7 cut(s) 82, 163, 360, 408, 435, 457, 462
Lsp1109I GCAGC 2 cut(s) 251, 254
LweI GCATC 3 cut(s) 37, 632, 634
MaeI CTAG 3 cut(s) 21, 120, 591
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 1 cut(s) 169
MalI GATC 6 cut(s) 80, 84, 110, 131, 154, 390
MboI GATC 6 cut(s) 78, 82, 108, 129, 152, 388
MboII GAAGA 8 cut(s) 45, 48, 57, 118, 367, 410, 667, 670
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 2 cut(s) 208, 549
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 5 cut(s) 127, 166, 178, 402, 408
MseI TTAA 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 2 cut(s) 45, 113
MwoI GCNNNNNNNGC 2 cut(s) 42, 515
NdeII GATC 6 cut(s) 78, 82, 108, 129, 152, 388
NlaIII CATG 2 cut(s) 136, 488
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 169
NruI TCGCGA 1 cut(s) 113
NspV TTCGAA 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 581
PfeI GAWTC 2 cut(s) 140, 428
PkrI GCNGC 2 cut(s) 241, 244
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 579
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 152
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 240, 243
Sau3AI GATC 6 cut(s) 78, 82, 108, 129, 152, 388
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 3 cut(s) 37, 632, 634
SfcI CTRYAG 2 cut(s) 237, 279
SfuI TTCGAA 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 2 cut(s) 208, 549
SsiI CCGC 1 cut(s) 599
SspMI CTAG 3 cut(s) 21, 120, 591
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 4 cut(s) 169, 283, 322, 638
TaiI ACGT 1 cut(s) 587
TaqI TCGA 4 cut(s) 81, 437, 553, 669
TaqII GACCGA 1 cut(s) 142
TasI AATT 2 cut(s) 208, 549
TfiI GAWTC 2 cut(s) 140, 428
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 239, 242
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 357, 441, 557, 688
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 219
XapI RAATTY 2 cut(s) 208, 549
XspI CTAG 3 cut(s) 21, 120, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.