Prupe.1G448700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010821
Physical Location & Seq
Reverse (-)
37893015 .. 37897461
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G448700.1

Sequence Viewer

Length: 666 bp
ATGGCCAGTGCGGTGAAGGTCAAGAGCGGCAACCTAGATGGCTCTTCAAAGGGAAAGATTGGCTATTCTGTTACTAAGAAGAAGATTGAGAGCTCATCAAGCAAGCAGGTAGCTGATGTAAAGCAGAAATCTGTGCAAACTGTTACAAAAACTGAGGTAAAACCAAAGCCAACTTCAGTATCAACAAAAAGTACCACAAAGACAACTACCACAAAGACCACTACCACAACAAAGGTGAAAGAGAAGAAAGTATATACTTTGGCAGGCCAGAAATTTGATCCTCCTGAAGAGAGAGAACCTCTGAGGATCTTCTACGAGTCGTTGTCCAAACAGATACCAACAAGTGAAATGGCAGAATTCTGGATGATGGAGCATGGCCTATTGTCCCCTGAAAGATCCAGAAAGGCATTCGAGAAGAAGCAGAGAAAGCAAAAGCAACTCCGGTTAGGAACTCCTATTAAGTCTACAAAACCACCAAGTAAACCTGAGTCTACAAAACCACCAAGTAAACCTGAGTCTACAAAACCACCTAGTAAACCTGAGAGCTCACAGAGGCAACAACAGCAGGCATCTAAGAATGGTGATGTAAAAGGCAAGAAGAGAGTTATCAAGGAGAGCGACGACGATGATGACTTCATTTTAAGTCCCAAGAGAAGGAGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.71

Weight (kDa)

10.14

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 27
AccI GTMKAC 3 cut(s) 464, 491, 518
AciI CCGC 2 cut(s) 11, 27
AclWI GGATC 3 cut(s) 272, 314, 390
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 272, 356
AcuI CTGAAG 2 cut(s) 159, 306
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 3 cut(s) 93, 113, 546
AluI AGCT 3 cut(s) 93, 113, 546
Alw21I GWGCWC 2 cut(s) 95, 548
AlwI GGATC 3 cut(s) 272, 314, 390
AoxI GGCC 3 cut(s) 3, 265, 376
ApoI RAATTY 2 cut(s) 272, 356
AsuHPI GGTGA 3 cut(s) 25, 247, 593
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 95, 548
Bbv12I GWGCWC 2 cut(s) 95, 548
BccI CCATC 2 cut(s) 32, 361
BfaI CTAG 2 cut(s) 35, 531
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmsI GCATC 1 cut(s) 578
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BsaWI WCCGGW 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 5 cut(s) 144, 293, 477, 504, 531
BseNI ACTGG 1 cut(s) 6
BshFI GGCC 3 cut(s) 5, 267, 378
BsiHKAI GWGCWC 2 cut(s) 95, 548
BsiSI CCGG 1 cut(s) 442
BslFI GGGAC 2 cut(s) 370, 630
BslI CCNNNNNNNGG 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 370, 630
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 5, 267, 378
Bsp1286I GDGCHC 2 cut(s) 95, 548
Bsp143I GATC 3 cut(s) 277, 306, 395
BspACI CCGC 2 cut(s) 11, 27
BspANI GGCC 3 cut(s) 5, 267, 378
BspCNI CTCAG 5 cut(s) 145, 294, 478, 505, 532
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 3 cut(s) 272, 314, 390
BspQI GCTCTTC 1 cut(s) 49
BsrBI CCGCTC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 6
BssMI GATC 3 cut(s) 277, 306, 395
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 3 cut(s) 49, 282, 593
BstC8I GCNNGC 3 cut(s) 104, 265, 567
BstDEI CTNAG 7 cut(s) 75, 153, 302, 486, 513, 540, 573
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 3 cut(s) 280, 309, 398
BstMBI GATC 3 cut(s) 277, 306, 395
BstMWI GCNNNNNNNGC 3 cut(s) 99, 427, 562
BstX2I RGATCY 2 cut(s) 306, 395
BstYI RGATCY 2 cut(s) 306, 395
BsuRI GGCC 3 cut(s) 5, 267, 378
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 104, 265, 567
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 374
CviJI RGCY 9 cut(s) 5, 42, 63, 93, 113, 169, 267, 378, 546
CviKI_1 RGCY 9 cut(s) 5, 42, 63, 93, 113, 169, 267, 378, 546
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 7 cut(s) 75, 153, 302, 486, 513, 540, 573
DpnI GATC 3 cut(s) 279, 308, 397
DpnII GATC 3 cut(s) 277, 306, 395
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 49, 282, 593
EarI CTCTTC 3 cut(s) 49, 282, 593
Ecl136II GAGCTC 2 cut(s) 93, 546
Eco24I GRGCYC 2 cut(s) 95, 548
Eco53kI GAGCTC 2 cut(s) 93, 546
Eco57I CTGAAG 2 cut(s) 159, 306
EcoICRI GAGCTC 2 cut(s) 93, 546
EcoRI GAATTC 1 cut(s) 356
EcoT38I GRGCYC 2 cut(s) 95, 548
FaeI CATG 1 cut(s) 377
FaiI YATR 3 cut(s) 253, 255, 375
FaqI GGGAC 2 cut(s) 370, 630
FatI CATG 1 cut(s) 373
FblI GTMKAC 3 cut(s) 464, 491, 518
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 2 cut(s) 95, 548
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 35, 531
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 3 cut(s) 5, 267, 378
HapII CCGG 1 cut(s) 442
Hin1II CATG 1 cut(s) 377
HinfI GANTC 3 cut(s) 317, 488, 515
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 25, 247, 593
Hpy166II GTNNAC 6 cut(s) 465, 482, 492, 509, 519, 536
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 5 cut(s) 22, 284, 361, 399, 412
Hpy8I GTNNAC 6 cut(s) 465, 482, 492, 509, 519, 536
Hpy99I CGWCG 2 cut(s) 623, 626
HpyAV CCTTC 2 cut(s) 10, 648
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 427, 562
HpyF3I CTNAG 7 cut(s) 75, 153, 302, 486, 513, 540, 573
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 3 cut(s) 277, 306, 395
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 370
LweI GCATC 1 cut(s) 578
MaeI CTAG 2 cut(s) 35, 531
MaeIII GTNAC 2 cut(s) 70, 142
MalI GATC 3 cut(s) 279, 308, 397
MbiI CCGCTC 1 cut(s) 27
MboI GATC 3 cut(s) 277, 306, 395
MboII GAAGA 8 cut(s) 36, 91, 94, 256, 299, 301, 427, 610
MflI RGATCY 2 cut(s) 306, 395
MhlI GDGCHC 2 cut(s) 95, 548
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 272, 356
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 326, 497, 524
MnlI CCTC 5 cut(s) 148, 291, 297, 309, 546
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 459, 641
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 442
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 99, 427, 562
NdeII GATC 3 cut(s) 277, 306, 395
NlaIII CATG 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 49
PctI GAATGC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 3 cut(s) 325, 496, 523
PpsI GAGTC 3 cut(s) 325, 496, 523
Psp124BI GAGCTC 2 cut(s) 95, 548
PsuI RGATCY 2 cut(s) 306, 395
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SacI GAGCTC 2 cut(s) 95, 548
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 459, 641
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 277, 306, 395
SchI GAGTC 3 cut(s) 326, 497, 524
SduI GDGCHC 2 cut(s) 95, 548
SfaNI GCATC 1 cut(s) 578
Sse9I AATT 2 cut(s) 272, 356
SsiI CCGC 2 cut(s) 11, 27
SspMI CTAG 2 cut(s) 35, 531
SstI GAGCTC 2 cut(s) 95, 548
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 411
TasI AATT 2 cut(s) 272, 356
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 459, 641
Tru9I TTAA 2 cut(s) 459, 641
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 625
TspRI CASTG 1 cut(s) 13
XapI RAATTY 2 cut(s) 272, 356
XmiI GTMKAC 3 cut(s) 464, 491, 518
XspI CTAG 2 cut(s) 35, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.