Rmu_sc0003594.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003594.1
OG0010821
Physical Location & Seq
Reverse (-)
79320 .. 81579
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003594.1_g000009.1.cds

Sequence Viewer

Length: 651 bp
atggccacttcggtgaaggtcaagacaggaggaacccaagatggttcttcaaagggaaagattggattttctgtcactaaaaacaagattgggagctcatcaaccaagccaggagctgattccaagcagaaatctgttcaaactgtcacaaaaactgaggtgaaatcaaaacaaagttccggtaccggttcagggtcagcaaaagtgaccacaaagaagacgacgacgacgagagtgaagaaagtgttcagtttggctggacagaaatttgatcctcctgaagagagagaacctttgaggattttctacgagtcattgtcacaacagataccaagtagtgaaatggcagaattctggatgatggagcatggcttattgtcccctgaaagatccagaaaagcttttgagaagaagcagagaaagcaaaagcaaatccggtcgggaattcctatcaagtctcctccagttaagtctcccccacttaggtctcctccgccaaaaccagtttcaaaagcaccaagcaaaccagagagttcacagaggcaacagctggcatctaagaatggtgatgtaaaagctaagaagagagttgttgatgagagtgacgatgacgacgacttaattttaagtccgaagagaaggagagggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.62

Weight (kDa)

10.31

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 494
AclWI GGATC 2 cut(s) 266, 384
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 266, 350, 444
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 192, 483
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 51, 140, 510
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 5 cut(s) 96, 116, 401, 550, 578
AluI AGCT 5 cut(s) 96, 116, 401, 550, 578
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 462, 477, 492
AlwI GGATC 2 cut(s) 266, 384
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 266, 350, 444
AsiGI ACCGGT 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 245
Asp718I GGTACC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 25, 172, 578
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 2 cut(s) 35, 355
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 462, 477, 492
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 34, 184
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 492
BsaWI WCCGGW 3 cut(s) 179, 185, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 483
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 464, 503
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 192, 483
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 464, 503
BseRI GAGGAG 2 cut(s) 450, 480
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 3 cut(s) 180, 186, 436
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 192, 483
BsmAI GTCTC 3 cut(s) 462, 477, 492
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 271, 389
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 34, 184
BspPI GGATC 2 cut(s) 266, 384
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 464, 503
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 271, 389
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 276, 578, 629
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 4 cut(s) 156, 482, 558, 579
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 274, 392
BstMAI GTCTC 3 cut(s) 462, 477, 492
BstMBI GATC 2 cut(s) 271, 389
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 552
CaiI CAGNNNCTG 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 185
Csp6I GTAC 1 cut(s) 183
CspAI ACCGGT 1 cut(s) 185
CviAII CATG 1 cut(s) 368
CviJI RGCY 9 cut(s) 5, 96, 109, 116, 257, 372, 401, 550, 578
CviKI_1 RGCY 9 cut(s) 5, 96, 109, 116, 257, 372, 401, 550, 578
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 4 cut(s) 156, 482, 558, 579
DpnI GATC 2 cut(s) 273, 391
DpnII GATC 2 cut(s) 271, 389
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 276, 578, 629
EarI CTCTTC 3 cut(s) 276, 578, 629
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 96
EcoRI GAATTC 2 cut(s) 350, 444
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 1 cut(s) 371
FaiI YATR 1 cut(s) 369
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 367
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 180, 186, 436
Hin1II CATG 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 2 cut(s) 119, 311
HpaII CCGG 3 cut(s) 180, 186, 436
HphI GGTGA 3 cut(s) 25, 172, 578
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 5 cut(s) 22, 278, 355, 393, 441
Hpy8I GTNNAC 1 cut(s) 536
Hpy99I CGWCG 4 cut(s) 226, 229, 232, 617
HpyAV CCTTC 2 cut(s) 10, 633
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 4 cut(s) 156, 482, 558, 579
Hsp92II CATG 1 cut(s) 371
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 271, 389
LmnI GCTCC 3 cut(s) 93, 113, 364
LweI GCATC 1 cut(s) 563
MaeIII GTNAC 5 cut(s) 73, 145, 205, 318, 602
MalI GATC 2 cut(s) 273, 391
MboI GATC 2 cut(s) 271, 389
MboII GAAGA 7 cut(s) 39, 229, 250, 293, 421, 595, 646
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 266, 350, 444, 621
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 8 cut(s) 23, 151, 285, 291, 471, 501, 534, 638
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 468, 620, 626
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 3 cut(s) 180, 186, 436
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 421
NdeII GATC 2 cut(s) 271, 389
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 34, 184
NmuCI GTSAC 5 cut(s) 73, 145, 205, 318, 602
OliI CACNNNNGTG 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 612
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 185
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 34, 184
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 468, 620, 626
Sau3AI GATC 2 cut(s) 271, 389
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 98
SetI ASST 9 cut(s) 21, 98, 118, 162, 295, 403, 488, 552, 580
SfaNI GCATC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 4 cut(s) 266, 350, 444, 621
SsiI CCGC 1 cut(s) 494
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 145
TasI AATT 4 cut(s) 266, 350, 444, 621
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 468, 620, 626
Tru9I TTAA 3 cut(s) 468, 620, 626
TseFI GTSAC 5 cut(s) 73, 145, 205, 318, 602
Tsp45I GTSAC 5 cut(s) 73, 145, 205, 318, 602
XapI RAATTY 3 cut(s) 266, 350, 444
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.