Rh6DG460600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010821
Physical Location & Seq
Forward (+)
62989656 .. 62995568
5913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG460600.1

Sequence Viewer

Length: 1311 bp
ATGGTTGTTGAAAGTTGGCCAACATTTGTTATAGTAGTTTCTCAAAATGGTTCTGGGGATTTTTTTTCTTTTTGTCCAAGGGAAAACAGGAGATTGCTGTGGATTGTGGGGACGATGTTTGCTGTGCTTATAGTTATCCAGCATCTTCATCCATTATCATATGTATTTTGGGCTAAAAAGGTTCCGGTGGAAGGGAAAACCAGCTTCCAAGCTAAAGATCTACCATCTAATGTTGATATAGTTGAAGAAAGTGGAGGCTTAATTAGACAGAAATTTAGACACTCTGGAGTTGTCAATATATCTGTTCAATCAAATGTGACTTCAGTGGAGAAAGATCGAACAACCTCTTCTGAGAAAATCCAAAATTCTGAGCATACTGACCTGAATGGAACAGGAAATAGTTCTTCAGTGACCAGAGTCCCTGAAGAGAACAAAGGTTCAGAGACTCCAATATTGGATGTATATACGATATCTGATATGAACAAGCTTTTGCATCATAGTCGGACCTCGTACCATTCAGTGATACCACAATGGTCTTCGTCCATAGACCAAGAGATTCAATATGCAGCATCACAGATTGGAAATGCACCCTTTATAGAGAATGATCCGAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAGAAGGAGCTATGAATTAATGGAGAGCACTCTTAAATTCAAGACAGGAGGAACCCAAGATGGTTCTTCAAGGGGAAAGATTGGATTTTCTGTCACTAAAAACAAGATTGGGAGCTCATCAACCAAGCCTGGAGCTGATTCCAAGCAGAAATCTGTTCAAACTGTCACAAAAACTGAGGTGAAATCAAAACAAAGTTCCGGTTCAGGGTCAGCAAAAGTGACCACAAAGAAGACGACGACGACGAGAGTGAAGAAAGTGTTCAGTTTGGCTGGACAGAAATTTGATCCTCCTGAAGAGAGAGAACCTTTGAGGATTTTCTACGAGTCATTGTCACAACAGATACCAAGTAGTGAAATGGCAGAATTCTGGATGATGGAGCATGGCTTATTGTCCCCTGAAAGATCCAGAAAAGCTTTTGAGAAGAAGCAGAGAAAGCAAAAGCAAATCCGGTCGGGAATTCCTATCAAGTCTCCTCCAGTTAAGTCTCCCCCACTTAGGTCTCCTCCACCAAAACCAGTTTCAAAAGCACCAAGCAAACCAGAGAGTTCACAGAGGCAACAGCTGGCATCTAAGAATGGTGATGTAAAAGCTAAGAAGAGAGTTGTTGATGAGAGTGACGATGATGACGACTTAATTTTAAGTCCGAAGAGAAGGAGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

48.66

Weight (kDa)

9.76

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 599, 926, 1044
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 6 cut(s) 272, 364, 683, 926, 1010, 1104
AcuI CTGAAG 4 cut(s) 306, 390, 444, 960
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 191, 852, 1143
AgsI TTSAA 8 cut(s) 11, 245, 308, 560, 688, 717, 806, 1170
AjnI CCWGG 1 cut(s) 775
AjuI GAANNNNNNNTTGG 2 cut(s) 1150, 1182
AluBI AGCT 9 cut(s) 204, 212, 487, 657, 762, 782, 1061, 1210, 1238
AluI AGCT 9 cut(s) 204, 212, 487, 657, 762, 782, 1061, 1210, 1238
Alw21I GWGCWC 2 cut(s) 677, 764
Alw26I GTCTC 4 cut(s) 437, 1122, 1137, 1152
AlwI GGATC 3 cut(s) 599, 926, 1044
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 6 cut(s) 272, 364, 683, 926, 1010, 1104
AseI ATTAAT 1 cut(s) 665
Asp700I GAANNNNTTC 2 cut(s) 400, 905
AspS9I GGNCC 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 838, 1238
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 19
BanII GRGCYC 1 cut(s) 764
BbsI GAAGAC 2 cut(s) 528, 884
Bbv12I GWGCWC 2 cut(s) 677, 764
BbvI GCAGC 1 cut(s) 578
BccI CCATC 3 cut(s) 232, 701, 1015
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 1 cut(s) 777
BcoDI GTCTC 4 cut(s) 437, 1122, 1137, 1152
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 2 cut(s) 183, 700
BmrFI CCNGG 1 cut(s) 777
BmsI GCATC 4 cut(s) 151, 502, 578, 1223
BoxI GACNNNNGTC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 528, 884
BpmI CTGGAG 3 cut(s) 306, 798, 1107
BsaBI GATNNNNATC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 1152
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 3 cut(s) 184, 845, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 852, 1143
Bse1I ACTGG 2 cut(s) 1124, 1163
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 148, 463, 1023
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 191, 852, 1143
BseMII CTCAG 3 cut(s) 342, 360, 813
BseNI ACTGG 2 cut(s) 1124, 1163
BseRI GAGGAG 3 cut(s) 612, 1110, 1140
BseXI GCAGC 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 1100
BshFI GGCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 1100
BsiHKAI GWGCWC 2 cut(s) 677, 764
BsiSI CCGG 3 cut(s) 185, 846, 1096
BslFI GGGAC 3 cut(s) 124, 404, 1024
BslI CCNNNNNNNGG 3 cut(s) 191, 852, 1143
BsmAI GTCTC 4 cut(s) 437, 1122, 1137, 1152
BsmFI GGGAC 3 cut(s) 124, 404, 1024
BsnI GGCC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 1152
Bsp1286I GDGCHC 2 cut(s) 677, 764
Bsp143I GATC 5 cut(s) 217, 334, 604, 931, 1049
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 3 cut(s) 343, 361, 814
BspLI GGNNCC 2 cut(s) 183, 700
BspPI GGATC 3 cut(s) 599, 926, 1044
BspTNI GGTCTC 1 cut(s) 1152
BsrI ACTGG 2 cut(s) 1124, 1163
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 5 cut(s) 217, 334, 604, 931, 1049
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 1 cut(s) 811
Bst6I CTCTTC 5 cut(s) 352, 420, 936, 1238, 1289
BstC8I GCNNGC 1 cut(s) 1212
BstDEI CTNAG 6 cut(s) 351, 369, 822, 1142, 1218, 1239
BstF5I GGATG 3 cut(s) 148, 463, 1023
BstKTI GATC 5 cut(s) 220, 337, 607, 934, 1052
BstMAI GTCTC 4 cut(s) 437, 1122, 1137, 1152
BstMBI GATC 5 cut(s) 217, 334, 604, 931, 1049
BstMCI CGRYCG 1 cut(s) 1100
BstMWI GCNNNNNNNGC 1 cut(s) 1081
BstNI CCWGG 1 cut(s) 777
BstPAI GACNNNNGTC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 2 cut(s) 528, 884
BstX2I RGATCY 2 cut(s) 217, 1049
BstYI RGATCY 2 cut(s) 217, 1049
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 3 cut(s) 148, 463, 1023
BtsIMutI CAGTG 3 cut(s) 330, 414, 525
Cac8I GCNNGC 1 cut(s) 1212
Cfr13I GGNCC 1 cut(s) 504
Csp6I GTAC 1 cut(s) 511
CviAII CATG 2 cut(s) 643, 1028
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 6 cut(s) 351, 369, 822, 1142, 1218, 1239
DpnI GATC 5 cut(s) 219, 336, 606, 933, 1051
DpnII GATC 5 cut(s) 217, 334, 604, 931, 1049
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 5 cut(s) 352, 420, 936, 1238, 1289
EarI CTCTTC 5 cut(s) 352, 420, 936, 1238, 1289
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 1152
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 504
Eco53kI GAGCTC 1 cut(s) 762
Eco57I CTGAAG 4 cut(s) 306, 390, 444, 960
EcoICRI GAGCTC 1 cut(s) 762
EcoRI GAATTC 2 cut(s) 1010, 1104
EcoRII CCWGG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 646, 1031
FaqI GGGAC 3 cut(s) 124, 404, 1024
FatI CATG 2 cut(s) 642, 1027
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 3 cut(s) 135, 470, 1030
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 1 cut(s) 567
GluI GCNGC 1 cut(s) 567
GsuI CTGGAG 3 cut(s) 306, 798, 1107
HaeIII GGCC 1 cut(s) 19
HapII CCGG 3 cut(s) 185, 846, 1096
Hin1II CATG 2 cut(s) 646, 1031
HindIII AAGCTT 2 cut(s) 485, 1059
HinfI GANTC 7 cut(s) 417, 445, 556, 610, 634, 785, 971
HpaII CCGG 3 cut(s) 185, 846, 1096
HphI GGTGA 2 cut(s) 838, 1238
Hpy166II GTNNAC 1 cut(s) 1196
Hpy188I TCNGA 8 cut(s) 352, 370, 442, 475, 504, 609, 633, 1293
Hpy188III TCNNGA 6 cut(s) 285, 688, 938, 1015, 1053, 1101
Hpy8I GTNNAC 1 cut(s) 1196
Hpy99I CGWCG 3 cut(s) 886, 889, 892
HpyAV CCTTC 3 cut(s) 185, 645, 1293
HpyCH4III ACNGT 1 cut(s) 811
HpyCH4V TGCA 3 cut(s) 493, 566, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 1081
HpyF3I CTNAG 6 cut(s) 351, 369, 822, 1142, 1218, 1239
Hsp92II CATG 2 cut(s) 646, 1031
Kzo9I GATC 5 cut(s) 217, 334, 604, 931, 1049
LmnI GCTCC 5 cut(s) 625, 654, 759, 779, 1024
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 4 cut(s) 151, 502, 578, 1223
MaeIII GTNAC 7 cut(s) 316, 409, 739, 811, 865, 978, 1262
MalI GATC 5 cut(s) 219, 336, 606, 933, 1051
MboI GATC 5 cut(s) 217, 334, 604, 931, 1049
MflI RGATCY 2 cut(s) 217, 1049
MhlI GDGCHC 2 cut(s) 677, 764
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 9 cut(s) 261, 272, 364, 662, 683, 926, 1010, 1104, 1281
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 3 cut(s) 426, 439, 980
MmeI TCCRAC 1 cut(s) 482
Mox20I TGGCCA 1 cut(s) 19
MroXI GAANNNNTTC 2 cut(s) 400, 905
MscI TGGCCA 1 cut(s) 19
MseI TTAA 6 cut(s) 260, 665, 681, 1128, 1280, 1286
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 1210
MspI CCGG 3 cut(s) 185, 846, 1096
MspR9I CCNGG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 1 cut(s) 1081
NdeI CATATG 1 cut(s) 160
NdeII GATC 5 cut(s) 217, 334, 604, 931, 1049
NlaIII CATG 2 cut(s) 646, 1031
NlaIV GGNNCC 2 cut(s) 183, 700
NmuCI GTSAC 7 cut(s) 316, 409, 739, 811, 865, 978, 1262
PcsI WCGNNNNNNNCGW 2 cut(s) 887, 1272
PdmI GAANNNNTTC 2 cut(s) 400, 905
PfeI GAWTC 4 cut(s) 556, 610, 634, 785
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 3 cut(s) 425, 439, 979
PpsI GAGTC 3 cut(s) 425, 439, 979
PshAI GACNNNNGTC 1 cut(s) 416
PshBI ATTAAT 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 775
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 2 cut(s) 183, 700
PspPI GGNCC 1 cut(s) 504
PsuI RGATCY 2 cut(s) 217, 1049
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SacI GAGCTC 1 cut(s) 764
SaqAI TTAA 6 cut(s) 260, 665, 681, 1128, 1280, 1286
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 5 cut(s) 217, 334, 604, 931, 1049
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 3 cut(s) 426, 439, 980
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 2 cut(s) 677, 764
SfaNI GCATC 4 cut(s) 151, 502, 578, 1223
SinI GGWCC 1 cut(s) 504
Sse9I AATT 9 cut(s) 261, 272, 364, 662, 683, 926, 1010, 1104, 1281
SspI AATATT 1 cut(s) 453
SstI GAGCTC 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 775
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 811
TaqI TCGA 1 cut(s) 337
TasI AATT 9 cut(s) 261, 272, 364, 662, 683, 926, 1010, 1104, 1281
TfiI GAWTC 4 cut(s) 556, 610, 634, 785
Tru1I TTAA 6 cut(s) 260, 665, 681, 1128, 1280, 1286
Tru9I TTAA 6 cut(s) 260, 665, 681, 1128, 1280, 1286
TscAI CASTG 3 cut(s) 330, 414, 525
TseFI GTSAC 7 cut(s) 316, 409, 739, 811, 865, 978, 1262
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 7 cut(s) 316, 409, 739, 811, 865, 978, 1262
TspDTI ATGAA 3 cut(s) 137, 494, 675
TspRI CASTG 3 cut(s) 330, 414, 525
VpaK11BI GGWCC 1 cut(s) 504
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 6 cut(s) 272, 364, 683, 926, 1010, 1104
XmnI GAANNNNTTC 2 cut(s) 400, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.