Rmu_co8231179.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8231179.1
OG0010821
Physical Location & Seq
Reverse (-)
2 .. 719
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8231179.1_g000001.1.cds

Sequence Viewer

Length: 349 bp
atggccacttcggtgaaggtcaagacaggaggaacccaagatggttcttcaaagggaaagattggattttctgtcactaaaaacaagattgggagctcatcaaccaagccaggagctgattccaagcagaaatctgttcaaactgtcacaaaaactgaggtgaaatcaaaacaaagttccggtaccggttcagggtcagcaaaagtgaccacaaagaagacgacgacgacgagagtgaagaaagtgttcagtttggctggacagaaatttgatcctcctgaagagagagaacctttgaggattttctacgagtcattgtcacaacagataccaagtagtgaaatggcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.26

Weight (kDa)

10.13

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 192
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 2 cut(s) 51, 140
AjnI CCWGG 1 cut(s) 109
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 2 cut(s) 96, 116
AluI AGCT 2 cut(s) 96, 116
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 266
AsiGI ACCGGT 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 245
Asp718I GGTACC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 25, 172
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 34, 184
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 179, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 185
BseBI CCWGG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 180, 186
BslI CCNNNNNNNGG 1 cut(s) 192
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 271
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 34, 184
BspPI GGATC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 5
CaiI CAGNNNCTG 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 185
Csp6I GTAC 1 cut(s) 183
CspAI ACCGGT 1 cut(s) 185
CviJI RGCY 5 cut(s) 5, 96, 109, 116, 257
CviKI_1 RGCY 5 cut(s) 5, 96, 109, 116, 257
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 180, 186
HinfI GANTC 2 cut(s) 119, 311
HpaII CCGG 2 cut(s) 180, 186
HphI GGTGA 2 cut(s) 25, 172
Hpy188III TCNNGA 2 cut(s) 22, 278
Hpy99I CGWCG 3 cut(s) 226, 229, 232
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 156
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 93, 113
LpnPI CCDG 8 cut(s) 12, 96, 123, 177, 193, 199, 243, 291
MaeIII GTNAC 4 cut(s) 73, 145, 205, 318
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 39, 229, 250, 293
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 4 cut(s) 23, 151, 285, 291
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 180, 186
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 34, 184
NmuCI GTSAC 4 cut(s) 73, 145, 205, 318
OliI CACNNNNGTG 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 185
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 34, 184
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 98
SetI ASST 5 cut(s) 21, 98, 118, 162, 295
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 1 cut(s) 266
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 145
TasI AATT 1 cut(s) 266
TfiI GAWTC 1 cut(s) 119
TseFI GTSAC 4 cut(s) 73, 145, 205, 318
Tsp45I GTSAC 4 cut(s) 73, 145, 205, 318
XapI RAATTY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.