RLG00000010817

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010821
Physical Location & Seq
Reverse (-)
4572196 .. 4574418
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010817

Sequence Viewer

Length: 645 bp
ATGGCCACTTCGGTGAAGGTCAAGACAGGAGGAACCCAAGATGGTTCTTCAAAGGGAAAGATTGGATTTTCTGTCACTAAAAACAAGATTGGGAGCTCATCAACCAAGCCTGGAGCTGATTCCAAGCAGAAATCTGTTCAAACTGTTACAAAAACTGAGGTGAAATCAAAACAAAGTTCCGGTTCAGGGTCAGCAAAAGTGACCACAAAGAAGACGACAACGACGAGAGTGAAGAAAGTGTTCAGTTTGGCTGGACAGAAATTTGATCCTCCTGAAGAGAGAGAACCTTTGAGGATTTTCTACGAGTCATTGTCGCAACAGATACCAAGTAGTGAAATGGCAGAATTCTGGATGATGGAGCATGGCTTATTGTCCCCTGAAAGATCCAGAAAAGCTTTTGAGAAGAAGCAGAGAAAGCAAAAGCAAATCCGGTCGGGAATTCCTATCAAGTCTCCTCCAGTTAAGTCTCCCCCACTTAGGTCTCCTCCACCAAAACCAGTTTCAAAAGCACCAAGCAAACCAGAGAGTTCACAGAGGCAACAGCTGGCATCTAAGAATGGTGATGTAAAAGCTAAGAAGAGAGTTGTTGATGACAGTGACGATGATGACGACTTAATTTTAAGTCCGAAGAGAAGGAGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.45

Weight (kDa)

10.31

Isoelectric Point (pI)

70.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11600 AT5G11600
fragaria_vesca FvH4_2g35630
malus_domestica MD08G1114400.v1.1 MD15G1093900.v1.1
prunus_persica Prupe.1G448700_v2.0.a1
pyrus_communis pycom08g09520 pycom15g08680
rosa_chinensis RchiOBHm_Chr6g0306181
rosa_laevigata RLG00000010817
rosa_multiflora Rmu_co8231179.1_g000001 Rmu_co8463041.1_g000001 Rmu_sc0003594.1_g000009
rosa_roxburghii Rroxscaffold_7G00161980
rosa_rugosa Rorug06G0347700
rosa_samantha Rh6AG460300 Rh6BG441100 Rh6CG474300 Rh6DG460600
rosa_wichuraiana Rw6G040090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 260, 378
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 260, 344, 438
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 186, 477
AgsI TTSAA 3 cut(s) 51, 140, 504
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 5 cut(s) 96, 116, 395, 544, 572
AluI AGCT 5 cut(s) 96, 116, 395, 544, 572
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 456, 471, 486
AlwI GGATC 2 cut(s) 260, 378
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 260, 344, 438
Asp700I GAANNNNTTC 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 25, 172, 572
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 98
BccI CCATC 2 cut(s) 35, 349
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 456, 471, 486
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 2 cut(s) 132, 441
BsaI GGTCTC 1 cut(s) 486
BsaWI WCCGGW 2 cut(s) 179, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 477
Bse1I ACTGG 2 cut(s) 458, 497
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 186, 477
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 458, 497
BseRI GAGGAG 2 cut(s) 444, 474
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 180, 430
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 186, 477
BsmAI GTCTC 3 cut(s) 456, 471, 486
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 265, 383
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 260, 378
BspTNI GGTCTC 1 cut(s) 486
BsrI ACTGG 2 cut(s) 458, 497
BssMI GATC 2 cut(s) 265, 383
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 145, 596
Bst6I CTCTTC 3 cut(s) 270, 572, 623
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 4 cut(s) 156, 476, 552, 573
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 2 cut(s) 268, 386
BstMAI GTCTC 3 cut(s) 456, 471, 486
BstMBI GATC 2 cut(s) 265, 383
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 546
CviAII CATG 1 cut(s) 362
CviJI RGCY 9 cut(s) 5, 96, 109, 116, 251, 366, 395, 544, 572
CviKI_1 RGCY 9 cut(s) 5, 96, 109, 116, 251, 366, 395, 544, 572
DdeI CTNAG 4 cut(s) 156, 476, 552, 573
DpnI GATC 2 cut(s) 267, 385
DpnII GATC 2 cut(s) 265, 383
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 270, 572, 623
EarI CTCTTC 3 cut(s) 270, 572, 623
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 96
EcoRI GAATTC 2 cut(s) 344, 438
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 1 cut(s) 365
FaiI YATR 1 cut(s) 363
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 361
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 98
GsuI CTGGAG 2 cut(s) 132, 441
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 180, 430
Hin1II CATG 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 2 cut(s) 119, 305
HpaII CCGG 2 cut(s) 180, 430
HphI GGTGA 3 cut(s) 25, 172, 572
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 5 cut(s) 22, 272, 349, 387, 435
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 10, 627
HpyCH4III ACNGT 2 cut(s) 145, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 4 cut(s) 156, 476, 552, 573
Hsp92II CATG 1 cut(s) 365
Kzo9I GATC 2 cut(s) 265, 383
LmnI GCTCC 3 cut(s) 93, 113, 358
LweI GCATC 1 cut(s) 557
MaeIII GTNAC 4 cut(s) 73, 145, 199, 596
MalI GATC 2 cut(s) 267, 385
MboI GATC 2 cut(s) 265, 383
MboII GAAGA 7 cut(s) 39, 223, 244, 287, 415, 589, 640
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 260, 344, 438, 615
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 8 cut(s) 23, 151, 279, 285, 465, 495, 528, 632
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 239
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 462, 614, 620
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 2 cut(s) 180, 430
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 415
NdeII GATC 2 cut(s) 265, 383
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 3 cut(s) 73, 199, 596
OliI CACNNNNGTG 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 221, 606
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 462, 614, 620
Sau3AI GATC 2 cut(s) 265, 383
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 98
SetI ASST 9 cut(s) 21, 98, 118, 162, 289, 397, 482, 546, 574
SfaNI GCATC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 4 cut(s) 260, 344, 438, 615
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 145, 596
TasI AATT 4 cut(s) 260, 344, 438, 615
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 462, 614, 620
Tru9I TTAA 3 cut(s) 462, 614, 620
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 3 cut(s) 73, 199, 596
Tsp45I GTSAC 3 cut(s) 73, 199, 596
TspRI CASTG 1 cut(s) 601
XapI RAATTY 3 cut(s) 260, 344, 438
XmnI GAANNNNTTC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.