Rorug06G0347700

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003090
Physical Location & Seq
Forward (+)
49835189 .. 49844497
9309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0347700.1

Sequence Viewer

Length: 645 bp
ATGGCCGGCATCAAACTCCATGGAAACGCTCTCTCAACGGCGGCATCGCGAGTTTTGGCTGCCCTCTATGAGAAAGAGGTTGAATTCGAGCTTGTTCCGATAGACATGATAGCTGGTGAACATAAAAAGGAGTCCTTCCTTGCCCTTAATCCATTTGGTCAAGTTCCCGCTTTTGAAGACGGAGATCTTCAGCTCTTCGAATCAAGAGCAATTACACAATACATTGCCCGTGAGTACGCTTCAAAGGGAACCCCGCTGATATTCCCAGACTCGAAGACGATGGCAATTCTATCAGTGTGGGCAGAGGTGGAGGCTCATACGTTCGACCCACCAGCCTCAAAACTGAAAGATGAGCTGGCTATGAAGCCTTTCCTAGGCTTGGCCACAGACTTCGCAGTTGTGGAGGAATTTGAAGCTAAGTTGGGTAAAATTCTCGATGTCTATGAAACTCGTCTCGGCCAATCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAATAATACACTACTTGATGGGAACACAAGCCAAGAAGCTGTTCGAGTGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

214

Amino Acids

23.75

Weight (kDa)

5.71

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 4 - 77 2.2e-20 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 6 - 81 2.8e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 77 5.3e-12 Glutathione S-transferase, N-terminal domain
GST_C PF00043 128 - 203 2.4e-13 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 132 - 197 2.4e-06 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 137 - 207 7.9e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 41, 168, 254, 565
AcoI YGGCCR 3 cut(s) 3, 381, 457
AcsI RAATTY 3 cut(s) 83, 407, 429
AcuI CTGAAG 2 cut(s) 173, 472
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 374, 379
AgsI TTSAA 4 cut(s) 83, 176, 243, 413
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 9 cut(s) 91, 113, 193, 355, 416, 492, 553, 590, 638
AluI AGCT 9 cut(s) 91, 113, 193, 355, 416, 492, 553, 590, 638
Alw26I GTCTC 1 cut(s) 458
AoxI GGCC 4 cut(s) 3, 381, 457, 605
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 3 cut(s) 83, 407, 429
Asp700I GAANNNNTTC 2 cut(s) 368, 554
AspA2I CCTAGG 1 cut(s) 373
AspLEI GCGC 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 128, 491, 497
AsuII TTCGAA 1 cut(s) 198
AvrII CCTAGG 1 cut(s) 373
BalI TGGCCA 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 183, 281
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 274, 526
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 374
BglII AGATCT 2 cut(s) 184, 499
BisI GCNGC 3 cut(s) 42, 60, 565
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 3 cut(s) 43, 61, 566
BmiI GGNNCC 1 cut(s) 250
BmsI GCATC 2 cut(s) 18, 53
BpiI GAAGAC 2 cut(s) 183, 281
Bpu14I TTCGAA 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 19, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 379
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 19, 373
BseLI CCNNNNNNNGG 2 cut(s) 374, 379
BseMI GCAATG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 5, 383, 459, 607
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 374, 379
BsmAI GTCTC 1 cut(s) 458
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 4 cut(s) 5, 383, 459, 607
Bsp119I TTCGAA 1 cut(s) 198
Bsp143I GATC 2 cut(s) 184, 499
Bsp19I CCATGG 1 cut(s) 19
Bsp68I TCGCGA 1 cut(s) 49
BspACI CCGC 4 cut(s) 41, 168, 254, 565
BspANI GGCC 4 cut(s) 5, 383, 459, 607
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 19, 373
BssMI GATC 2 cut(s) 184, 499
BssT1I CCWWGG 2 cut(s) 19, 373
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 7, 357, 609
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 19
BstENI CCTNNNNNAGG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 2 cut(s) 187, 502
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 2 cut(s) 184, 499
BstMWI GCNNNNNNNGC 3 cut(s) 587, 608, 635
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 183, 281
BstX2I RGATCY 2 cut(s) 184, 499
BstYI RGATCY 2 cut(s) 184, 499
BsuRI GGCC 4 cut(s) 5, 383, 459, 607
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 7, 357, 609
CfoI GCGC 1 cut(s) 581
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 235
CviAII CATG 4 cut(s) 20, 106, 582, 631
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 186, 501
DpnII GATC 2 cut(s) 184, 499
EaeI YGGCCR 3 cut(s) 3, 381, 457
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 19, 373
Eco147I AGGCCT 1 cut(s) 607
Eco32I GATATC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 173, 472
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 2 cut(s) 19, 373
ErhI CCWWGG 2 cut(s) 19, 373
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 4 cut(s) 23, 109, 585, 634
FaiI YATR 9 cut(s) 21, 69, 107, 123, 318, 362, 444, 583, 632
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 595, 627
FatI CATG 4 cut(s) 19, 105, 581, 630
FauI CCCGC 2 cut(s) 175, 261
Fnu4HI GCNGC 3 cut(s) 42, 60, 565
Fsp4HI GCNGC 3 cut(s) 42, 60, 565
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 580
GluI GCNGC 3 cut(s) 42, 60, 565
HaeIII GGCC 4 cut(s) 5, 383, 459, 607
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 581
Hin1II CATG 4 cut(s) 23, 109, 585, 634
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HinfI GANTC 3 cut(s) 131, 200, 269
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 128, 491, 497
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 3 cut(s) 48, 204, 434
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 145, 521
HpyCH4IV ACGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 587, 608, 635
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 4 cut(s) 23, 109, 585, 634
HspAI GCGC 1 cut(s) 579
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 184, 499
LguI GCTCTTC 1 cut(s) 200
LpnPI CCDG 6 cut(s) 19, 99, 279, 341, 345, 621
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 2 cut(s) 18, 53
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 320
MalI GATC 2 cut(s) 186, 501
MboI GATC 2 cut(s) 184, 499
MboII GAAGA 5 cut(s) 179, 187, 188, 286, 494
MflI RGATCY 2 cut(s) 184, 499
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 5 cut(s) 83, 210, 285, 407, 429
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 140, 263
MnlI CCTC 7 cut(s) 70, 74, 298, 304, 346, 397, 470
Mox20I TGGCCA 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 368, 554
MscI TGGCCA 1 cut(s) 383
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 587, 608, 635
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 184, 499
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 23, 109, 585, 634
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 435
NruI TCGCGA 1 cut(s) 49
NspV TTCGAA 1 cut(s) 198
PceI AGGCCT 1 cut(s) 607
PciSI GCTCTTC 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 2 cut(s) 368, 554
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 43, 61, 566
PleI GAGTC 2 cut(s) 139, 263
PpsI GAGTC 2 cut(s) 139, 263
PspN4I GGNNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 184, 499
RruI TCGCGA 1 cut(s) 49
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 42, 60, 565
Sau3AI GATC 2 cut(s) 184, 499
SchI GAGTC 2 cut(s) 140, 263
SfaNI GCATC 2 cut(s) 18, 53
SfuI TTCGAA 1 cut(s) 198
Sse9I AATT 5 cut(s) 83, 210, 285, 407, 429
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 4 cut(s) 41, 168, 254, 565
SspMI CTAG 1 cut(s) 374
StuI AGGCCT 1 cut(s) 607
StyI CCWWGG 2 cut(s) 19, 373
TaiI ACGT 1 cut(s) 323
TaqI TCGA 7 cut(s) 87, 198, 272, 324, 435, 464, 558
TasI AATT 5 cut(s) 83, 210, 285, 407, 429
TauI GCSGC 2 cut(s) 44, 567
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 377, 459
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 300
XagI CCTNNNNNAGG 1 cut(s) 372
XapI RAATTY 3 cut(s) 83, 407, 429
XmaJI CCTAGG 1 cut(s) 373
XmnI GAANNNNTTC 2 cut(s) 368, 554
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.