Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Reverse (-)

5572827 .. 5574811

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGTCGGGAGCTTTTGTCTATGTATCAAGCCAAAACGAGGAGATTGCTGTGGATTGTGGGAATGTTGTTTGCTGTGATTTTAGTTGTCTGGCATCTTGAATTTCCATATGGTACTTTCTCATTGTCTATACTCTCTACTGCAAAGGTTCCGGTAGAGGGGAAAAGTCGCTTCCAAGCTGGGGATTCACCATCTGATTCTGAGGCGGTTGGTAACATGTCGCTTTCTAATGATGTGAACTACACTAGGAAATATGGAACTCACGAGATAGGTAACGATAGTAGGACCTCGGGTTTTGTATTAGAAGGAAGTGAGGGCTCAAACAGAACTTTAGAAATTGATGAGGATACAGGTGAAGATCAGGAGGAGGCATCTGATACTTTTGTAAAGCAAAATAGAACTTTCATTGTGAAAATTGTCAACCCCTTGGAGGCTGACGTCGCACAAGAGCGGCGTAAACAATTCTCTTTTGAAAAGCAAAATACTACCGAGACTACTTTTCCAGAAGGCAGGACTAGGAATGAAAGAAATACTACAGATGAAGTAGTAAATCCTACTGCTGGTTTTCCAACCACTTCACCTGCATCCCCGATGATAAATTCATCACCTATCACAGCTCCAGCAATTATTGAAACAAACGTTGGAGCACCCCCTATAGCTGTTGGCTCAAATGTGACTTTGGTTCAGAAAGATCTAACAACCTTGTCTCAGAAACCCAAAAAGTCTGAGCAATTGCATAGTGACCTCAACCAAACAGAACAAAGTTCTTCAATGACTAGGGTCCCCGAAGTGAACAAAGAGCCAGAGCGTCCAGCCTTGGATGCATATTCAATATCTGATATGAACAAGCTGTTGCGTAAGAGTCATTCCCCGTACCATTCAGTGAAACCACTATGGTCTTCACCGGTTGACCAACAGTTGCAATTTGCAGCATCACAGATCGAAAATGCACCCCTTATAAAGAGTGATCAAACTCTTTATGCTCCACTATATAGGAATCTTTCCATGTTTAAAAGGAGCTACGAATTAATGGAGAACACTCTTAAAGTATACGTATACAGGGAAGGACAAAGACCCATATTACACTCGCCATTTCTCAGGGGAATATATGCTTCCGAGGGTTGGTTCATGAAGCTGATGGAAGCTGACAAGAGATTTGTCACTAAAAACCCTCTGGAAGCCCACCTATATTACTTGCCTTTTAGCTCTCGAATGTTAGAGGAAAGGTTATACGTGGCCAATTCACACAGTCATAAAAATCTTGTACAATATTTGAAGGACTATGTGGACATGATTGCTGGGAAGTATCCTTTCTGGAACAGAACTGGAAAAAAGGAGCCGATCATTTTCTTGTTGCTTGTCATGACTGGGCCCCAACAGAAACGAAGGAAATTATGGCTATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

470

Amino Acids

53.31

Weight (kDa)

8.3

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	959
AarI	CACCTGC	1 cut(s)	589
AatII	GACGTC	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	451
AccI	GTMKAC	2 cut(s)	1050, 1056
AciI	CCGC	2 cut(s)	206, 451
AclI	AACGTT	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	1236
AcsI	RAATTY	2 cut(s)	101, 598
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	3 cut(s)	115, 875, 1266
AfiI	CCNNNNNNNGG	6 cut(s)	39, 158, 181, 430, 560, 1122
AflIII	ACRYGT	1 cut(s)	216
AgeI	ACCGGT	1 cut(s)	904
AgsI	TTSAA	6 cut(s)	101, 473, 632, 771, 831, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	9 cut(s)	13, 179, 617, 659, 850, 1020, 1135, 1145, 1206
AluI	AGCT	9 cut(s)	13, 179, 617, 659, 850, 1020, 1135, 1145, 1206
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	485, 711
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	1236, 1370
ApaI	GGGCCC	1 cut(s)	1374
ApeKI	GCWGC	1 cut(s)	929
ApoI	RAATTY	2 cut(s)	101, 598
ArsI	GACNNNNNNTTYG	2 cut(s)	1139, 1171
AseI	ATTAAT	1 cut(s)	1028
AsiGI	ACCGGT	1 cut(s)	904
AspS9I	GGNCC	4 cut(s)	285, 781, 1370, 1371
AsuHPI	GGTGA	5 cut(s)	180, 365, 570, 597, 894
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	2 cut(s)	285, 781
BaeGI	GKGCMC	1 cut(s)	1374
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BalI	TGGCCA	1 cut(s)	1238
BanII	GRGCYC	2 cut(s)	320, 1374
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	941
BccI	CCATC	2 cut(s)	199, 1132
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciVI	GTATCC	2 cut(s)	340, 1317
BclI	TGATCA	1 cut(s)	967
BcoDI	GTCTC	2 cut(s)	485, 711
BfaI	CTAG	3 cut(s)	246, 516, 777
BfmI	CTRYAG	2 cut(s)	534, 654
BfuAI	ACCTGC	1 cut(s)	589
BfuI	GTATCC	2 cut(s)	340, 1317
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	2 cut(s)	452, 930
BlsI	GCNGC	2 cut(s)	453, 931
Bme18I	GGWCC	2 cut(s)	285, 781
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	285, 781, 1370, 1371
BmiI	GGNNCC	6 cut(s)	150, 782, 783, 1338, 1372, 1373
BmrI	ACTGGG	1 cut(s)	1377
BmsI	GCATC	5 cut(s)	103, 380, 593, 811, 941
BmuI	ACTGGG	1 cut(s)	1377
BoxI	GACNNNNGTC	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	603
BsaAI	YACGTR	2 cut(s)	1054, 1234
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	288, 426, 816, 1116
BsaWI	WCCGGW	2 cut(s)	151, 904
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 158, 181, 430, 560, 1122
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	2 cut(s)	1330, 1372
BseDI	CCNNGG	4 cut(s)	288, 426, 816, 1116
BseGI	GGATG	2 cut(s)	584, 826
BseLI	CCNNNNNNNGG	6 cut(s)	39, 158, 181, 430, 560, 1122
BseMII	CTCAG	4 cut(s)	192, 717, 722, 1111
BseNI	ACTGG	2 cut(s)	1330, 1372
BseRI	GAGGAG	2 cut(s)	55, 380
BseSI	GKGCMC	1 cut(s)	1374
BseXI	GCAGC	1 cut(s)	941
BseYI	CCCAGC	2 cut(s)	179, 1298
BshFI	GGCC	2 cut(s)	1238, 1372
BshTI	ACCGGT	1 cut(s)	904
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	152, 905
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	6 cut(s)	39, 158, 181, 430, 560, 1122
BsmAI	GTCTC	2 cut(s)	485, 711
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	1238, 1372
BsoBI	CYCGRG	1 cut(s)	289
Bsp120I	GGGCCC	1 cut(s)	1370
Bsp1286I	GDGCHC	3 cut(s)	320, 649, 1374
Bsp1407I	TGTACA	1 cut(s)	1264
Bsp143I	GATC	5 cut(s)	358, 691, 939, 967, 1341
BspACI	CCGC	2 cut(s)	206, 451
BspANI	GGCC	2 cut(s)	1238, 1372
BspCNI	CTCAG	4 cut(s)	193, 718, 721, 1110
BspHI	TCATGA	2 cut(s)	1128, 1362
BspLI	GGNNCC	6 cut(s)	150, 782, 783, 1338, 1372, 1373
BspMI	ACCTGC	1 cut(s)	589
BsrBI	CCGCTC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	904
BsrGI	TGTACA	1 cut(s)	1264
BsrI	ACTGG	2 cut(s)	1330, 1372
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	4 cut(s)	288, 426, 816, 1116
BssMI	GATC	5 cut(s)	358, 691, 939, 967, 1341
BssNAI	GTATAC	2 cut(s)	1051, 1057
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	426, 816
Bst1107I	GTATAC	2 cut(s)	1051, 1057
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	918, 1250
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	1264
BstBAI	YACGTR	2 cut(s)	1054, 1234
BstDEI	CTNAG	4 cut(s)	201, 708, 726, 1097
BstF5I	GGATG	2 cut(s)	584, 826
BstKTI	GATC	5 cut(s)	361, 694, 942, 970, 1344
BstMAI	GTCTC	2 cut(s)	485, 711
BstMBI	GATC	5 cut(s)	358, 691, 939, 967, 1341
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 821
BstNSI	RCATGY	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	779
BstSFI	CTRYAG	2 cut(s)	534, 654
BstSLI	GKGCMC	1 cut(s)	1374
BstSNI	TACGTA	1 cut(s)	1054
BstV1I	GCAGC	1 cut(s)	941
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BstZ17I	GTATAC	2 cut(s)	1051, 1057
BsuI	GTATCC	2 cut(s)	340, 1317
BsuRI	GGCC	2 cut(s)	1238, 1372
BtsCI	GGATG	2 cut(s)	584, 826
BtsIMutI	CAGTG	1 cut(s)	888
BveI	ACCTGC	1 cut(s)	589
CciI	TCATGA	2 cut(s)	1128, 1362
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	4 cut(s)	285, 781, 1370, 1371
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	3 cut(s)	114, 874, 1265
CspAI	ACCGGT	1 cut(s)	904
CviAII	CATG	5 cut(s)	217, 1006, 1129, 1291, 1363
CviQI	GTAC	3 cut(s)	114, 874, 1265
DdeI	CTNAG	4 cut(s)	201, 708, 726, 1097
DpnI	GATC	5 cut(s)	360, 693, 941, 969, 1343
DpnII	GATC	5 cut(s)	358, 691, 939, 967, 1341
DraI	TTTAAA	1 cut(s)	1012
EaeI	YGGCCR	1 cut(s)	1236
Eco105I	TACGTA	1 cut(s)	1054
Eco130I	CCWWGG	2 cut(s)	426, 816
Eco24I	GRGCYC	2 cut(s)	320, 1374
Eco47I	GGWCC	2 cut(s)	285, 781
Eco88I	CYCGRG	1 cut(s)	289
EcoO109I	RGGNCCY	3 cut(s)	285, 781, 1371
EcoT14I	CCWWGG	2 cut(s)	426, 816
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	2 cut(s)	320, 1374
ErhI	CCWWGG	2 cut(s)	426, 816
FaeI	CATG	5 cut(s)	220, 1009, 1132, 1294, 1366
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	5 cut(s)	216, 1005, 1128, 1290, 1362
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	967
FblI	GTMKAC	2 cut(s)	1050, 1056
Fnu4HI	GCNGC	2 cut(s)	452, 930
FokI	GGATG	2 cut(s)	571, 833
FriOI	GRGCYC	2 cut(s)	320, 1374
Fsp4HI	GCNGC	2 cut(s)	452, 930
FspBI	CTAG	3 cut(s)	246, 516, 777
GluI	GCNGC	2 cut(s)	452, 930
GsaI	CCCAGC	2 cut(s)	183, 1302
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	2 cut(s)	1238, 1372
HapII	CCGG	2 cut(s)	152, 905
HgaI	GACGC	1 cut(s)	797
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	220, 1009, 1132, 1294, 1366
HincII	GTYRAC	2 cut(s)	421, 910
HindII	GTYRAC	2 cut(s)	421, 910
HinfI	GANTC	4 cut(s)	185, 197, 862, 997
HpaII	CCGG	2 cut(s)	152, 905
HphI	GGTGA	5 cut(s)	180, 365, 570, 597, 894
Hpy166II	GTNNAC	8 cut(s)	238, 421, 458, 793, 910, 1051, 1057, 1288
Hpy188I	TCNGA	8 cut(s)	196, 202, 376, 687, 711, 727, 838, 1117
Hpy8I	GTNNAC	8 cut(s)	238, 421, 458, 793, 910, 1051, 1057, 1288
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	5 cut(s)	299, 500, 1058, 1270, 1380
HpyCH4III	ACNGT	2 cut(s)	918, 1250
HpyCH4IV	ACGT	4 cut(s)	438, 639, 1053, 1233
HpyCH4V	TGCA	8 cut(s)	143, 584, 736, 824, 922, 929, 950, 1406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 821
HpyF3I	CTNAG	4 cut(s)	201, 708, 726, 1097
HpySE526I	ACGT	4 cut(s)	438, 639, 1053, 1233
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	5 cut(s)	220, 1009, 1132, 1294, 1366
KflI	GGGWCCC	1 cut(s)	781
Ksp22I	TGATCA	1 cut(s)	967
Kzo9I	GATC	5 cut(s)	358, 691, 939, 967, 1341
LmnI	GCTCC	6 cut(s)	10, 622, 644, 988, 1017, 1336
Lsp1109I	GCAGC	1 cut(s)	941
LweI	GCATC	5 cut(s)	103, 380, 593, 811, 941
MaeI	CTAG	3 cut(s)	246, 516, 777
MaeII	ACGT	4 cut(s)	438, 639, 1053, 1233
MaeIII	GTNAC	5 cut(s)	212, 272, 673, 740, 1159
MalI	GATC	5 cut(s)	360, 693, 941, 969, 1343
MbiI	CCGCTC	1 cut(s)	451
MboI	GATC	5 cut(s)	358, 691, 939, 967, 1341
MboII	GAAGA	3 cut(s)	368, 759, 891
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	3 cut(s)	320, 649, 1374
MlsI	TGGCCA	1 cut(s)	1238
MluNI	TGGCCA	1 cut(s)	1238
MlyI	GAGTC	1 cut(s)	871
MmeI	TCCRAC	2 cut(s)	593, 622
Mox20I	TGGCCA	1 cut(s)	1238
Mph1103I	ATGCAT	1 cut(s)	826
MscI	TGGCCA	1 cut(s)	1238
MseI	TTAA	3 cut(s)	1011, 1028, 1044
Msp20I	TGGCCA	1 cut(s)	1238
MspI	CCGG	2 cut(s)	152, 905
MunI	CAATTG	1 cut(s)	731
MwoI	GCNNNNNNNGC	2 cut(s)	440, 821
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	5 cut(s)	358, 691, 939, 967, 1341
NlaIII	CATG	5 cut(s)	220, 1009, 1132, 1294, 1366
NlaIV	GGNNCC	6 cut(s)	150, 782, 783, 1338, 1372, 1373
NmuCI	GTSAC	3 cut(s)	673, 740, 1159
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	1 cut(s)	220
PagI	TCATGA	2 cut(s)	1128, 1362
PaqCI	CACCTGC	1 cut(s)	589
PciI	ACATGT	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	185, 197, 997
PinAI	ACCGGT	1 cut(s)	904
PkrI	GCNGC	2 cut(s)	453, 931
PleI	GAGTC	1 cut(s)	870
PpsI	GAGTC	1 cut(s)	870
Ppu21I	YACGTR	2 cut(s)	1054, 1234
PpuMI	RGGWCCY	2 cut(s)	285, 781
PscI	ACATGT	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	779
PshBI	ATTAAT	1 cut(s)	1028
PsiI	TTATAA	1 cut(s)	959
Psp1406I	AACGTT	1 cut(s)	639
Psp5II	RGGWCCY	2 cut(s)	285, 781
PspFI	CCCAGC	2 cut(s)	179, 1298
PspN4I	GGNNCC	6 cut(s)	150, 782, 783, 1338, 1372, 1373
PspOMI	GGGCCC	1 cut(s)	1370
PspPI	GGNCC	4 cut(s)	285, 781, 1370, 1371
PspPPI	RGGWCCY	2 cut(s)	285, 781
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	3 cut(s)	115, 875, 1266
RsaNI	GTAC	3 cut(s)	114, 874, 1265
SaqAI	TTAA	3 cut(s)	1011, 1028, 1044
SatI	GCNGC	2 cut(s)	452, 930
Sau3AI	GATC	5 cut(s)	358, 691, 939, 967, 1341
Sau96I	GGNCC	4 cut(s)	285, 781, 1370, 1371
SchI	GAGTC	1 cut(s)	871
SduI	GDGCHC	3 cut(s)	320, 649, 1374
SfaNI	GCATC	5 cut(s)	103, 380, 593, 811, 941
SfcI	CTRYAG	2 cut(s)	534, 654
SinI	GGWCC	2 cut(s)	285, 781
SnaBI	TACGTA	1 cut(s)	1054
SsiI	CCGC	2 cut(s)	206, 451
SspI	AATATT	1 cut(s)	1271
SspMI	CTAG	3 cut(s)	246, 516, 777
StyI	CCWWGG	2 cut(s)	426, 816
TaaI	ACNGT	2 cut(s)	918, 1250
TaiI	ACGT	4 cut(s)	441, 642, 1056, 1236
TaqI	TCGA	2 cut(s)	942, 1210
TatI	WGTACW	1 cut(s)	1264
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	3 cut(s)	185, 197, 997
Tru1I	TTAA	3 cut(s)	1011, 1028, 1044
Tru9I	TTAA	3 cut(s)	1011, 1028, 1044
TscAI	CASTG	1 cut(s)	888
TseFI	GTSAC	3 cut(s)	673, 740, 1159
TseI	GCWGC	1 cut(s)	929
Tsp45I	GTSAC	3 cut(s)	673, 740, 1159
TspDTI	ATGAA	7 cut(s)	394, 537, 555, 591, 857, 1117, 1145
TspRI	CASTG	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	285, 781
VspI	ATTAAT	1 cut(s)	1028
XapI	RAATTY	2 cut(s)	101, 598
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	1050, 1056
XspI	CTAG	3 cut(s)	246, 516, 777
ZraI	GACGTC	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.