Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Reverse (-)

49816223 .. 49818413

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCTTATCATGATTGGGGGTCTGCTTCCTGAAGGGAATCAGGTTCCTTTGTCTTTGTATGAAGCGAAAAAGACACTTAGTGCTTTAGGGATGGAGTATGAAAAAATTCATGCATGTCCTAATGACTGCATCTTGTATAGACAGCAGCATGCAGATGCACTCATCTGCCCCAACTGTGGTGTTCCAAGGTGGAAATTGGGTAGGGCTAAAACTGTGAAAGAAGGGATACCTGCAAAGGTTTTGTGGTACTTTCCACCAATCCCAAGGTTCAAACGATTGTATCAATCGACCAACACAGCTAAGAATCTTACTTGGCATGAGTTTGGTAGAAAGAAAGATGGAATGATGCGACACCCAGCTGATTCTCCTACTTGGGAATTACTTGACAAGCAATATCCAGAATTCAGTAGCGACCCTAGAAACCTCAGACTAGCTCTATCTTCTGATGGATTTAACCCGCATAGTTCTCTAAGCAGCAAGTATTCTTGTTGGCCAGTTATACTGGTCACATATAACCTTCCTCCATGGCTTTATTCATTGGACAACATAGTGGCTGAAGGAACGATCATTCAAGTGGATGTTGAGTCCAGCAAGCAAACCATCCATGGTGTTCCATTGGTTGAGGAAAATGTCCGAGTGTCGATCACCAAATCTATTGTTGCCAATGCTTTGCTACCAATTCCTATTAAGGATGAGATTCTGTTTGTCCGCGATGCAATTGGTACATGCGTTGCTTGGCCTAGAGACTGGGTTATACCCACTGCAGCTGATGCAAAGCAACAAAAGCATAAAATTGTGAGGAGGAAAAAGAAGGATACATATGATGATTTTTTTGATCATGATGATTTGGACAAGCTGCCACCCAATTTGCCTCCACTACTTAAGACGTTGGCCACATGGGCTAATGATAACTTAAAGGATGGGATCACCATCCACACAACCTTAGGCGAGGAATTATTTGGATATCGAAAGAAGGTCGCCATCTTCAGAAGGGATGTGTATGCCATGACCAACATGGAGGAGGTTTCTGCCGGCTGCGTTGTGATGTATATGAGCTTCCTTTATCAAGTGTTGAAGAAATCGAAGATGCTTGACATGATTGGCTTCGTAGATCCTGCTAATACTGGTGTCATTGGCTGTGGAAATCCGACTGAACGGGCTCGTTCGTTGTCAGTTTCTTATGAAAGAGGGAAGCCTGGTCAGATTTTTTTGGTCCCCTATAATTCAGGGTACGAAAGCTTCATTCATGCATTTTTGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

421

Amino Acids

47.7

Weight (kDa)

8.71

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_21	PF02992	113 - 193	1.7e-29	Transposase family tnp2
DUF8039	PF26133	183 - 251	2.5e-09	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	458, 709
AclWI	GGATC	2 cut(s)	932, 1106
AcoI	YGGCCR	2 cut(s)	491, 891
AcsI	RAATTY	2 cut(s)	105, 401
AcuI	CTGAAG	3 cut(s)	51, 576, 970
AdeI	CACNNNGTG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	248, 724, 1232
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	881
AgsI	TTSAA	3 cut(s)	271, 572, 1075
AjnI	CCWGG	1 cut(s)	1195
AluBI	AGCT	7 cut(s)	299, 359, 434, 767, 856, 1056, 1239
AluI	AGCT	7 cut(s)	299, 359, 434, 767, 856, 1056, 1239
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	932, 1106
AoxI	GGCC	3 cut(s)	491, 737, 891
ApeKI	GCWGC	5 cut(s)	145, 474, 764, 856, 1035
ApoI	RAATTY	2 cut(s)	105, 401
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	1213
AsuHPI	GGTGA	2 cut(s)	637, 919
AvaII	GGWCC	1 cut(s)	1213
AxyI	CCTNAGG	1 cut(s)	943
BaeI	ACNNNNGTAYC	4 cut(s)	263, 296, 714, 747
BalI	TGGCCA	2 cut(s)	493, 893
BanII	GRGCYC	1 cut(s)	1162
BarI	GAAGNNNNNNTAC	4 cut(s)	1040, 1072, 1223, 1255
BbvI	GCAGC	5 cut(s)	157, 486, 776, 843, 1022
BccI	CCATC	7 cut(s)	85, 332, 440, 608, 914, 938, 989
BciT130I	CCWGG	1 cut(s)	1197
BciVI	GTATCC	2 cut(s)	219, 808
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	3 cut(s)	417, 431, 741
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	2 cut(s)	219, 808
BglI	GCCNNNNNGGC	1 cut(s)	899
BisI	GCNGC	5 cut(s)	146, 475, 765, 857, 1036
BlsI	GCNGC	5 cut(s)	147, 476, 766, 858, 1037
Bme1390I	CCNGG	1 cut(s)	1197
Bme18I	GGWCC	1 cut(s)	1213
BmgT120I	GGNCC	1 cut(s)	1213
BmiI	GGNNCC	2 cut(s)	45, 1215
BmrFI	CCNGG	1 cut(s)	1197
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	6 cut(s)	138, 145, 336, 703, 760, 1077
BmuI	ACTGGG	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	929
BsaJI	CCNNGG	4 cut(s)	185, 263, 524, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	1031
Bse1I	ACTGG	4 cut(s)	494, 507, 752, 1129
Bse21I	CCTNAGG	1 cut(s)	943
Bse8I	GATNNNNATC	1 cut(s)	929
BseBI	CCWGG	1 cut(s)	1197
BseDI	CCNNGG	4 cut(s)	185, 263, 524, 604
BseGI	GGATG	7 cut(s)	96, 583, 600, 697, 925, 930, 1000
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	4 cut(s)	494, 507, 752, 1129
BseRI	GAGGAG	2 cut(s)	814, 1034
BseXI	GCAGC	5 cut(s)	157, 486, 776, 843, 1022
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	493, 739, 893
BsiSI	CCGG	1 cut(s)	1032
BslFI	GGGAC	1 cut(s)	1199
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	1199
BsnI	GGCC	3 cut(s)	493, 739, 893
Bsp1286I	GDGCHC	1 cut(s)	1162
Bsp143I	GATC	5 cut(s)	564, 642, 835, 924, 1111
Bsp19I	CCATGG	2 cut(s)	524, 604
BspACI	CCGC	2 cut(s)	458, 709
BspANI	GGCC	3 cut(s)	493, 739, 893
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	711
BspHI	TCATGA	2 cut(s)	9, 838
BspLI	GGNNCC	2 cut(s)	45, 1215
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	932, 1106
BspTI	CTTAAG	1 cut(s)	881
BsrFI	RCCGGY	1 cut(s)	1031
BsrI	ACTGG	4 cut(s)	494, 507, 752, 1129
BssAI	RCCGGY	1 cut(s)	1031
BssECI	CCNNGG	4 cut(s)	185, 263, 524, 604
BssMI	GATC	5 cut(s)	564, 642, 835, 924, 1111
BssT1I	CCWWGG	4 cut(s)	185, 263, 524, 604
Bst2UI	CCWGG	1 cut(s)	1197
Bst4CI	ACNGT	2 cut(s)	176, 214
BstAFI	CTTAAG	1 cut(s)	881
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	150, 593, 1033
BstDEI	CTNAG	5 cut(s)	77, 300, 425, 470, 943
BstDSI	CCRYGG	2 cut(s)	524, 604
BstF5I	GGATG	7 cut(s)	96, 583, 600, 697, 925, 930, 1000
BstFNI	CGCG	1 cut(s)	711
BstKTI	GATC	5 cut(s)	567, 645, 838, 927, 1114
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	5 cut(s)	564, 642, 835, 924, 1111
BstMWI	GCNNNNNNNGC	3 cut(s)	770, 784, 899
BstNI	CCWGG	1 cut(s)	1197
BstNSI	RCATGY	3 cut(s)	117, 152, 729
BstSCI	CCNGG	1 cut(s)	1195
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	5 cut(s)	157, 486, 776, 843, 1022
BstX2I	RGATCY	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	1111
Bsu36I	CCTNAGG	1 cut(s)	943
BsuI	GTATCC	2 cut(s)	219, 808
BsuRI	GGCC	3 cut(s)	493, 739, 893
BtgI	CCRYGG	2 cut(s)	524, 604
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	7 cut(s)	96, 583, 600, 697, 925, 930, 1000
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	150, 593, 1033
CciI	TCATGA	2 cut(s)	9, 838
Cfr10I	RCCGGY	1 cut(s)	1031
Cfr13I	GGNCC	1 cut(s)	1213
Csp6I	GTAC	3 cut(s)	247, 723, 1231
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviQI	GTAC	3 cut(s)	247, 723, 1231
DdeI	CTNAG	5 cut(s)	77, 300, 425, 470, 943
DpnI	GATC	5 cut(s)	566, 644, 837, 926, 1113
DpnII	GATC	5 cut(s)	564, 642, 835, 924, 1111
DraIII	CACNNNGTG	1 cut(s)	80
EaeI	YGGCCR	2 cut(s)	491, 891
Eco130I	CCWWGG	4 cut(s)	185, 263, 524, 604
Eco24I	GRGCYC	1 cut(s)	1162
Eco32I	GATATC	1 cut(s)	965
Eco47I	GGWCC	1 cut(s)	1213
Eco57I	CTGAAG	3 cut(s)	51, 576, 970
Eco81I	CCTNAGG	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	1195
EcoRV	GATATC	1 cut(s)	965
EcoT14I	CCWWGG	4 cut(s)	185, 263, 524, 604
EcoT22I	ATGCAT	2 cut(s)	115, 1252
EcoT38I	GRGCYC	1 cut(s)	1162
ErhI	CCWWGG	4 cut(s)	185, 263, 524, 604
FaqI	GGGAC	1 cut(s)	1199
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	5 cut(s)	146, 475, 765, 857, 1036
FokI	GGATG	7 cut(s)	103, 587, 590, 704, 917, 932, 1007
FriOI	GRGCYC	1 cut(s)	1162
Fsp4HI	GCNGC	5 cut(s)	146, 475, 765, 857, 1036
FspBI	CTAG	3 cut(s)	417, 431, 741
GluI	GCNGC	5 cut(s)	146, 475, 765, 857, 1036
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	493, 739, 893
HapII	CCGG	1 cut(s)	1032
HindIII	AAGCTT	1 cut(s)	1237
HinfI	GANTC	5 cut(s)	37, 304, 362, 584, 697
HpaII	CCGG	1 cut(s)	1032
HphI	GGTGA	2 cut(s)	637, 919
Hpy188I	TCNGA	6 cut(s)	428, 445, 635, 989, 1149, 1203
Hpy188III	TCNNGA	4 cut(s)	10, 29, 398, 839
HpyAV	CCTTC	7 cut(s)	26, 215, 527, 551, 805, 967, 984
HpyCH4III	ACNGT	2 cut(s)	176, 214
HpyCH4IV	ACGT	1 cut(s)	887
HpyCH4V	TGCA	9 cut(s)	113, 129, 152, 158, 233, 716, 764, 773, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	770, 784, 899
HpyF3I	CTNAG	5 cut(s)	77, 300, 425, 470, 943
HpySE526I	ACGT	1 cut(s)	887
KroI	GCCGGC	1 cut(s)	1031
KroNI	GCCGGC	1 cut(s)	1033
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	564, 642, 835, 924, 1111
Lsp1109I	GCAGC	5 cut(s)	157, 486, 776, 843, 1022
LweI	GCATC	6 cut(s)	138, 145, 336, 703, 760, 1077
MaeI	CTAG	3 cut(s)	417, 431, 741
MaeII	ACGT	1 cut(s)	887
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	5 cut(s)	566, 644, 837, 926, 1113
MboI	GATC	5 cut(s)	564, 642, 835, 924, 1111
MboII	GAAGA	4 cut(s)	432, 976, 1087, 1096
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	1111
MhlI	GDGCHC	1 cut(s)	1162
MlsI	TGGCCA	2 cut(s)	493, 893
MluNI	TGGCCA	2 cut(s)	493, 893
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	1172
Mox20I	TGGCCA	2 cut(s)	493, 893
Mph1103I	ATGCAT	2 cut(s)	115, 1252
MroNI	GCCGGC	1 cut(s)	1031
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	2 cut(s)	493, 893
MseI	TTAA	4 cut(s)	453, 687, 882, 914
MslI	CAYNNNNRTG	2 cut(s)	153, 572
Msp20I	TGGCCA	2 cut(s)	493, 893
MspA1I	CMGCKG	2 cut(s)	359, 767
MspCI	CTTAAG	1 cut(s)	881
MspI	CCGG	1 cut(s)	1032
MspR9I	CCNGG	1 cut(s)	1197
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	1197
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	3 cut(s)	770, 784, 899
NaeI	GCCGGC	1 cut(s)	1033
NcoI	CCATGG	2 cut(s)	524, 604
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	5 cut(s)	564, 642, 835, 924, 1111
NgoMIV	GCCGGC	1 cut(s)	1031
NlaIV	GGNNCC	2 cut(s)	45, 1215
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	2 cut(s)	115, 1252
NspI	RCATGY	3 cut(s)	117, 152, 729
PaeI	GCATGC	1 cut(s)	152
PagI	TCATGA	2 cut(s)	9, 838
PdiI	GCCGGC	1 cut(s)	1033
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	37, 304, 362, 697
PkrI	GCNGC	5 cut(s)	147, 476, 766, 858, 1037
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	1195
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	1195
PspN4I	GGNNCC	2 cut(s)	45, 1215
PspPI	GGNCC	1 cut(s)	1213
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	1111
PvuII	CAGCTG	2 cut(s)	359, 767
RsaI	GTAC	3 cut(s)	248, 724, 1232
RsaNI	GTAC	3 cut(s)	247, 723, 1231
RseI	CAYNNNNRTG	2 cut(s)	153, 572
SaqAI	TTAA	4 cut(s)	453, 687, 882, 914
SatI	GCNGC	5 cut(s)	146, 475, 765, 857, 1036
Sau3AI	GATC	5 cut(s)	564, 642, 835, 924, 1111
Sau96I	GGNCC	1 cut(s)	1213
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	1197
SduI	GDGCHC	1 cut(s)	1162
SfaNI	GCATC	6 cut(s)	138, 145, 336, 703, 760, 1077
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	1213
SmiMI	CAYNNNNRTG	2 cut(s)	153, 572
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SphI	GCATGC	1 cut(s)	152
SsiI	CCGC	2 cut(s)	458, 709
SspMI	CTAG	3 cut(s)	417, 431, 741
StyD4I	CCNGG	1 cut(s)	1195
StyI	CCWWGG	4 cut(s)	185, 263, 524, 604
TaaI	ACNGT	2 cut(s)	176, 214
TaiI	ACGT	1 cut(s)	890
TaqI	TCGA	4 cut(s)	287, 641, 967, 1082
TfiI	GAWTC	4 cut(s)	37, 304, 362, 697
Tru1I	TTAA	4 cut(s)	453, 687, 882, 914
Tru9I	TTAA	4 cut(s)	453, 687, 882, 914
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	5 cut(s)	145, 474, 764, 856, 1035
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	7 cut(s)	75, 98, 114, 525, 1197, 1231, 1235
TspRI	CASTG	1 cut(s)	766
Vha464I	CTTAAG	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	1213
XapI	RAATTY	2 cut(s)	105, 401
XceI	RCATGY	3 cut(s)	117, 152, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	417, 431, 741
Zsp2I	ATGCAT	2 cut(s)	115, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.