Rroxscaffold_7G00161990

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003090
Physical Location & Seq
Reverse (-)
4630046 .. 4632595
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161990.1

Sequence Viewer

Length: 1704 bp
ATGGTTCTGGGGCTTTTTTCTTTTTGTCCAAGGGAAACCAGGAGATTGCTGTGGATTATGGGGATGATGTTTACTGTGCTTATAGTTATCCATCATCTTCATACATTACCATATGTATTTTTGGCTAAAAAGGCTCCGGTGGAAGGGAAAACCAGCTTCCAAGCTAAAGATCTACCATCTAATGTTGATATAGTTGGTAATGTGTCGGTTTCTAATGGTTTCAACTACACTGCTACATATGCATTTCATAAGATAGCTAATACTAGCACCTCTAGTTTTGTATCAGAAGAAAGTGGAGGCTTAGACAGAAATTTAGACACTGGGGTTGTCAATATATCTGTTCAATCAAATGTGACTTCAGTGGAGAAAGATCGAACAACCTCTTCTGAGAAAATCCAAAACTCTGAGCATACTGACCTGAATGGAACAGGAAATGGTTCTTCAGTGACCAGAGTCCCTGAAGAGAACAAAGGGTCGATCAGAATTCCAATATTGGATGTATATACGATATCTGATATGAACAGGCTTTTGCATCATAGTCGGACCTCGTACCATTCAGTGATACCACAATGGTCTTCGTCCATAGACCAAGAGATTCAATATGCAGCATCACATATTGGAAATGCATCCTTTATAGAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAAAAGGAGCTATGAATTAATGGAGAGCACTCTTAAAGTATACATTTACAGTGAAGGAGAAAGACCTATAATGCACACGCCAGTACTCAAAGGCATATATGCTTCTGAGGGATGGTTCATGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAAAGACCCTCAGAAAGCGCACCTCTATTACTTACCTTTTAGCTCTCTAATGTTAGAGGAAAAACTATATGTGCCAAATTCACATAGTTATAAGAATTTCGTAGAGTATTTGAAGAACTACATCAACCTGATTGCGGGGAAATATTCTTTCTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCTTGCCATGACTGGGCTCCAACAGAAACAAAGAAGTACATGTCTAAGTGCATTAGGTCCCTTTGCAATGCTGATATGAAAGAAGGCTTTGTATTAGGCAAGGATGTGTCTCTTCCTGAAACAAACGTTCATGTCAAAAATCCTCTAAGAAATCTAGGAGGCAACCGTCCTTCTGAGAGGTCGATACTTGCTTTCTTTGCTGGAAAGATGCATGGTTATGTTCGGCCGATTCTGCTGCAGCATTGGGAAAACAAAGATCCCGACATGAAAATTTTTGGTCGATTACCTAGGGGAAAAGGCAACAAGAACTATGTGCACCATATGAAAAGCAGCAAGTACTGCATTTGTGCAAGAGGTTATGAAGTCAACAGTCCAAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCAGTGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTCAATTGGGAGTCGTTTGCTGTTTTCGTCTTGGAGAAAGATATTCCGAATTTGAAGAAGATATTGCTTGCAATCCCAGAGAAGAGATATCTACAGATGCAGACGAGGGTGAAAAGGGTACAACAGCATTTTCTGTGGCATGTTATGCCTGAAAAGTATGACATTTTTCATATGATACTCCACTCCATTTGGTACAGTAGACTCTATCAGATAAAATCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

567

Amino Acids

65.29

Weight (kDa)

9.12

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 237 - 515 6.3e-66 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AccI GTMKAC 2 cut(s) 726, 1678
AciI CCGC 1 cut(s) 974
AclI AACGTT 1 cut(s) 1152
AclWI GGATC 2 cut(s) 638, 1277
AcoI YGGCCR 1 cut(s) 1250
AcsI RAATTY 7 cut(s) 310, 483, 830, 916, 934, 1296, 1528
AcuI CTGAAG 3 cut(s) 342, 426, 480
AfaI GTAC 6 cut(s) 551, 771, 1064, 1364, 1599, 1673
AfiI CCNNNNNNNGG 3 cut(s) 143, 973, 1039
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 5 cut(s) 223, 344, 599, 952, 1534
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 7 cut(s) 156, 164, 257, 696, 814, 882, 1701
AluI AGCT 7 cut(s) 156, 164, 257, 696, 814, 882, 1701
Alw21I GWGCWC 2 cut(s) 716, 1344
Alw26I GTCTC 1 cut(s) 1140
Alw44I GTGCAC 1 cut(s) 1340
AlwI GGATC 2 cut(s) 638, 1277
AoxI GGCC 2 cut(s) 1250, 1413
ApaLI GTGCAC 1 cut(s) 1340
ApeKI GCWGC 5 cut(s) 605, 811, 1261, 1264, 1356
ApoI RAATTY 7 cut(s) 310, 483, 830, 916, 934, 1296, 1528
AseI ATTAAT 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 436
AspA2I CCTAGG 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 2 cut(s) 543, 1083
AsuHPI GGTGA 1 cut(s) 1600
AsuII TTCGAA 1 cut(s) 1473
AvaII GGWCC 2 cut(s) 543, 1083
AvrII CCTAGG 1 cut(s) 1313
BaeGI GKGCMC 1 cut(s) 1344
BanII GRGCYC 1 cut(s) 1045
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 716, 1344
BbvI GCAGC 5 cut(s) 617, 823, 1248, 1276, 1368
BccI CCATC 3 cut(s) 99, 184, 792
BcgI CGANNNNNNTGC 4 cut(s) 521, 555, 1243, 1277
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 1140
BfaI CTAG 4 cut(s) 264, 273, 1181, 1314
BfmI CTRYAG 2 cut(s) 1262, 1571
BglII AGATCT 1 cut(s) 169
BisI GCNGC 5 cut(s) 606, 812, 1262, 1265, 1357
BlnI CCTAGG 1 cut(s) 1313
BlsI GCNGC 5 cut(s) 607, 813, 1263, 1266, 1358
BmcAI AGTACT 2 cut(s) 771, 1364
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 543, 1083
BmgT120I GGNCC 2 cut(s) 543, 1083
BmiI GGNNCC 3 cut(s) 135, 1044, 1085
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 2 cut(s) 330, 1048
BmsI GCATC 5 cut(s) 541, 617, 635, 1224, 1566
BmuI ACTGGG 2 cut(s) 330, 1048
BoxI GACNNNNGTC 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 1473
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 29, 1313
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 973, 1039
Bse1I ACTGG 5 cut(s) 325, 767, 1006, 1043, 1436
Bse3DI GCAATG 1 cut(s) 1099
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 29, 1313
BseGI GGATG 5 cut(s) 69, 502, 626, 803, 1135
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 3 cut(s) 143, 973, 1039
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 5 cut(s) 378, 396, 783, 863, 1191
BseNI ACTGG 5 cut(s) 325, 767, 1006, 1043, 1436
BseRI GAGGAG 1 cut(s) 651
BseSI GKGCMC 1 cut(s) 1344
BseX3I CGGCCG 1 cut(s) 1250
BseXI GCAGC 5 cut(s) 617, 823, 1248, 1276, 1368
Bsh1285I CGRYCG 1 cut(s) 1253
BshFI GGCC 2 cut(s) 1252, 1415
BsiEI CGRYCG 1 cut(s) 1253
BsiHKAI GWGCWC 2 cut(s) 716, 1344
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 440, 1069
BslI CCNNNNNNNGG 3 cut(s) 143, 973, 1039
BsmAI GTCTC 1 cut(s) 1140
BsmFI GGGAC 2 cut(s) 440, 1069
BsnI GGCC 2 cut(s) 1252, 1415
Bsp119I TTCGAA 1 cut(s) 1473
Bsp1286I GDGCHC 3 cut(s) 716, 1045, 1344
Bsp143I GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
BspACI CCGC 1 cut(s) 974
BspANI GGCC 2 cut(s) 1252, 1415
BspCNI CTCAG 5 cut(s) 379, 397, 784, 862, 1192
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 3 cut(s) 135, 1044, 1085
BspMAI CTGCAG 1 cut(s) 1266
BspPI GGATC 2 cut(s) 638, 1277
BspT104I TTCGAA 1 cut(s) 1473
BsrDI GCAATG 1 cut(s) 1099
BsrI ACTGG 5 cut(s) 325, 767, 1006, 1043, 1436
BssECI CCNNGG 2 cut(s) 29, 1313
BssMI GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
BssNAI GTATAC 1 cut(s) 727
BssT1I CCWWGG 2 cut(s) 29, 1313
Bst1107I GTATAC 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 5 cut(s) 76, 737, 1193, 1397, 1676
Bst6I CTCTTC 4 cut(s) 388, 456, 1143, 1556
BstAPI GCANNNNNTGC 2 cut(s) 1365, 1624
BstBI TTCGAA 1 cut(s) 1473
BstC8I GCNNGC 2 cut(s) 1030, 1548
BstDEI CTNAG 8 cut(s) 301, 387, 405, 792, 849, 1071, 1172, 1200
BstF5I GGATG 5 cut(s) 69, 502, 626, 803, 1135
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 7 cut(s) 172, 373, 480, 646, 823, 1015, 1285
BstMAI GTCTC 1 cut(s) 1140
BstMBI GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
BstMCI CGRYCG 1 cut(s) 1253
BstMWI GCNNNNNNNGC 6 cut(s) 131, 239, 1223, 1258, 1365, 1624
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 2 cut(s) 1069, 1622
BstPAI GACNNNNGTC 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 2 cut(s) 1262, 1571
BstSLI GKGCMC 1 cut(s) 1344
BstV1I GCAGC 5 cut(s) 617, 823, 1248, 1276, 1368
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 169, 1282
BstYI RGATCY 2 cut(s) 169, 1282
BstZ17I GTATAC 1 cut(s) 727
BstZI CGGCCG 1 cut(s) 1250
BsuRI GGCC 2 cut(s) 1252, 1415
BtsCI GGATG 5 cut(s) 69, 502, 626, 803, 1135
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 7 cut(s) 228, 318, 366, 450, 564, 742, 1443
Cac8I GCNNGC 2 cut(s) 1030, 1548
CciI TCATGA 1 cut(s) 804
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 2 cut(s) 543, 1083
Csp6I GTAC 6 cut(s) 550, 770, 1063, 1363, 1598, 1672
CspCI CAANNNNNGTGG 2 cut(s) 1649, 1684
CviAII CATG 8 cut(s) 682, 805, 1034, 1066, 1157, 1238, 1291, 1619
CviQI GTAC 6 cut(s) 550, 770, 1063, 1363, 1598, 1672
DdeI CTNAG 8 cut(s) 301, 387, 405, 792, 849, 1071, 1172, 1200
DpnI GATC 7 cut(s) 171, 372, 479, 645, 822, 1014, 1284
DpnII GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
DraI TTTAAA 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 1250
EagI CGGCCG 1 cut(s) 1250
Eam1104I CTCTTC 4 cut(s) 388, 456, 1143, 1556
EarI CTCTTC 4 cut(s) 388, 456, 1143, 1556
EclXI CGGCCG 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 29, 1313
Eco24I GRGCYC 1 cut(s) 1045
Eco32I GATATC 2 cut(s) 510, 1568
Eco47I GGWCC 2 cut(s) 543, 1083
Eco52I CGGCCG 1 cut(s) 1250
Eco57I CTGAAG 3 cut(s) 342, 426, 480
EcoO109I RGGNCCY 1 cut(s) 1083
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 2 cut(s) 510, 1568
EcoT14I CCWWGG 2 cut(s) 29, 1313
EcoT22I ATGCAT 3 cut(s) 244, 628, 1239
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 29, 1313
FaeI CATG 8 cut(s) 685, 808, 1037, 1069, 1160, 1241, 1294, 1622
FaqI GGGAC 2 cut(s) 440, 1069
FatI CATG 8 cut(s) 681, 804, 1033, 1065, 1156, 1237, 1290, 1618
FauI CCCGC 1 cut(s) 967
FauNDI CATATG 4 cut(s) 112, 238, 1347, 1650
FblI GTMKAC 2 cut(s) 726, 1678
Fnu4HI GCNGC 5 cut(s) 606, 812, 1262, 1265, 1357
FokI GGATG 5 cut(s) 76, 509, 613, 810, 1142
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 5 cut(s) 606, 812, 1262, 1265, 1357
FspBI CTAG 4 cut(s) 264, 273, 1181, 1314
GlaI GCGC 1 cut(s) 858
GluI GCNGC 5 cut(s) 606, 812, 1262, 1265, 1357
HaeIII GGCC 2 cut(s) 1252, 1415
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 859
Hin1II CATG 8 cut(s) 685, 808, 1037, 1069, 1160, 1241, 1294, 1622
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 1 cut(s) 1393
HindII GTYRAC 1 cut(s) 1393
HinfI GANTC 6 cut(s) 453, 595, 673, 1255, 1490, 1680
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 1600
Hpy166II GTNNAC 5 cut(s) 72, 727, 1342, 1393, 1679
Hpy188III TCNNGA 4 cut(s) 805, 991, 1142, 1286
Hpy8I GTNNAC 5 cut(s) 72, 727, 1342, 1393, 1679
HpyAV CCTTC 4 cut(s) 137, 734, 1103, 1206
HpyCH4III ACNGT 5 cut(s) 76, 737, 1193, 1397, 1676
HpyCH4IV ACGT 1 cut(s) 1152
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 239, 1223, 1258, 1365, 1624
HpyF3I CTNAG 8 cut(s) 301, 387, 405, 792, 849, 1071, 1172, 1200
HpySE526I ACGT 1 cut(s) 1152
Hsp92II CATG 8 cut(s) 685, 808, 1037, 1069, 1160, 1241, 1294, 1622
HspAI GCGC 1 cut(s) 857
Kzo9I GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
LmnI GCTCC 6 cut(s) 139, 664, 693, 819, 1007, 1048
Lsp1109I GCAGC 5 cut(s) 617, 823, 1248, 1276, 1368
LweI GCATC 5 cut(s) 541, 617, 635, 1224, 1566
MaeI CTAG 4 cut(s) 264, 273, 1181, 1314
MaeII ACGT 1 cut(s) 1152
MaeIII GTNAC 3 cut(s) 352, 445, 835
MalI GATC 7 cut(s) 171, 372, 479, 645, 822, 1014, 1284
MboI GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
MfeI CAATTG 1 cut(s) 1483
MflI RGATCY 2 cut(s) 169, 1282
MhlI GDGCHC 3 cut(s) 716, 1045, 1344
MlyI GAGTC 3 cut(s) 462, 1499, 1674
MmeI TCCRAC 2 cut(s) 521, 1070
Mph1103I ATGCAT 3 cut(s) 244, 628, 1239
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 3 cut(s) 687, 704, 720
MslI CAYNNNNRTG 1 cut(s) 1242
MspA1I CMGCKG 1 cut(s) 1701
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 1483
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 6 cut(s) 131, 239, 1223, 1258, 1365, 1624
NdeI CATATG 4 cut(s) 112, 238, 1347, 1650
NdeII GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
NlaIII CATG 8 cut(s) 685, 808, 1037, 1069, 1160, 1241, 1294, 1622
NlaIV GGNNCC 3 cut(s) 135, 1044, 1085
NmuCI GTSAC 2 cut(s) 352, 445
NsiI ATGCAT 3 cut(s) 244, 628, 1239
NspI RCATGY 2 cut(s) 1069, 1622
NspV TTCGAA 1 cut(s) 1473
PagI TCATGA 1 cut(s) 804
PciI ACATGT 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 3 cut(s) 595, 673, 1255
PkrI GCNGC 5 cut(s) 607, 813, 1263, 1266, 1358
PleI GAGTC 3 cut(s) 461, 1498, 1674
PpsI GAGTC 3 cut(s) 461, 1498, 1674
PpuMI RGGWCCY 1 cut(s) 1083
PscI ACATGT 1 cut(s) 1065
PshAI GACNNNNGTC 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 704
PsiI TTATAA 1 cut(s) 930
Psp1406I AACGTT 1 cut(s) 1152
Psp5II RGGWCCY 1 cut(s) 1083
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 135, 1044, 1085
PspPI GGNCC 2 cut(s) 543, 1083
PspPPI RGGWCCY 1 cut(s) 1083
PstI CTGCAG 1 cut(s) 1266
PsuI RGATCY 2 cut(s) 169, 1282
PvuII CAGCTG 1 cut(s) 1701
RsaI GTAC 6 cut(s) 551, 771, 1064, 1364, 1599, 1673
RsaNI GTAC 6 cut(s) 550, 770, 1063, 1363, 1598, 1672
RseI CAYNNNNRTG 1 cut(s) 1242
SaqAI TTAA 3 cut(s) 687, 704, 720
SatI GCNGC 5 cut(s) 606, 812, 1262, 1265, 1357
Sau3AI GATC 7 cut(s) 169, 370, 477, 643, 820, 1012, 1282
Sau96I GGNCC 2 cut(s) 543, 1083
ScaI AGTACT 2 cut(s) 771, 1364
SchI GAGTC 3 cut(s) 462, 1499, 1674
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 3 cut(s) 716, 1045, 1344
SfaNI GCATC 5 cut(s) 541, 617, 635, 1224, 1566
SfcI CTRYAG 2 cut(s) 1262, 1571
SfuI TTCGAA 1 cut(s) 1473
SinI GGWCC 2 cut(s) 543, 1083
SmiMI CAYNNNNRTG 1 cut(s) 1242
SsiI CCGC 1 cut(s) 974
SspI AATATT 2 cut(s) 492, 983
SspMI CTAG 4 cut(s) 264, 273, 1181, 1314
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 2 cut(s) 29, 1313
TaaI ACNGT 5 cut(s) 76, 737, 1193, 1397, 1676
TaiI ACGT 1 cut(s) 1155
TaqI TCGA 5 cut(s) 373, 476, 1208, 1306, 1473
TatI WGTACW 3 cut(s) 769, 1062, 1362
TfiI GAWTC 3 cut(s) 595, 673, 1255
Tru1I TTAA 3 cut(s) 687, 704, 720
Tru9I TTAA 3 cut(s) 687, 704, 720
TscAI CASTG 7 cut(s) 235, 325, 366, 450, 564, 742, 1443
TseFI GTSAC 2 cut(s) 352, 445
TseI GCWGC 5 cut(s) 605, 811, 1261, 1264, 1356
Tsp45I GTSAC 2 cut(s) 352, 445
TspRI CASTG 7 cut(s) 235, 325, 366, 450, 564, 742, 1443
VneI GTGCAC 1 cut(s) 1340
VpaK11BI GGWCC 2 cut(s) 543, 1083
VspI ATTAAT 1 cut(s) 704
XapI RAATTY 7 cut(s) 310, 483, 830, 916, 934, 1296, 1528
XceI RCATGY 2 cut(s) 1069, 1622
XmaJI CCTAGG 1 cut(s) 1313
XmiI GTMKAC 2 cut(s) 726, 1678
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 4 cut(s) 264, 273, 1181, 1314
ZrmI AGTACT 2 cut(s) 771, 1364
Zsp2I ATGCAT 3 cut(s) 244, 628, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.