AT5G11610

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003090
Physical Location & Seq
Reverse (-)
3735350 .. 3738230
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11610.1

Sequence Viewer

Length: 1641 bp
ATGGATCAAAGTCGGGTTTTGCGGTTTATAGGCCAAGTGGAAACCTGTAGAGTTGTTCTTCTCATGGTTCTGGTTGTTGCCTTCGTTTCAGGCCTTCAGTATTTTGAGCTCTCTCCAGTACTACTATCTATTGTTTCACCTGGAAACAGCACTATTTCTGAATTCAGAAAATCCAATGATACGACTAAAAGTGCTGAAAATGAAACGTTTCTTGCATCTCAAGAAGCATCCACCGGGCTTAAACCGTATAACAGAACTACAGAGGTATTGAAGAGTTCTGAGCACAAGTTTCTGAATGATTCTCACAAAATAGAAGCTTCTGGACAACGTAGAAGAAGCAATGAAACTGCAAGTTCTCTGCATCCTCTTCAACCAAAGATTCCTCAAATCCGCAAGAAATATCCCCATAGGAGCATAACAAAGCCACCATCAATTGTCATATCAATAAAGCAGATGAACAATATGATATTGAAGCGGCATAATGATCCAAAAAATTCACTTGCACCTCTCTGGGGATCAAAAGTGGACCAAGAGCTTAAAACTGCAAGAGACAAGATCAAGAAAGCGGCTTTGGTCAAGAAAGATGATACTCTTTACGCACCTCTCTACCACAACATATCCATCTTCAAAAGGAGCTATGAGCTAATGGAACAAACTCTGAAAGTGTATGTCTACTCGGAAGGGGATAGACCAATTTTCCATCAGCCTGAGGCAATAATGGAAGGGATTTACGCATCAGAAGGATGGTTTATGAAACTAATGGAGAGTAGCCATAGATTCTTGACAAAAGATCCCACCAAAGCTCATTTATTCTACATACCTTTCAGTTCAAGAATTCTTCAACAGAAACTTTACGTTCATGACTCTCACAGTCGTAATAATCTTGTTAAATATCTTGGAAACTACATTGATCTCATCGCTTCCAACTACCCTTCCTGGAATAGAACTTGTGGCTCCGATCATTTCTTCACCGCTTGCCATGACTGGGCTCCAACCGAGACTAGGGGACCGTACATAAACTGCATCAGAGCACTCTGTAACGCCGATGTTGGCATAGACTTTGTGGTCGGAAAAGATGTTTCTTTGCCGGAAACTAAAGTCTCTTCTTTGCAAAATCCAAACGGAAAAATTGGAGGTAGCCGCCCTTCCAAGCGAACCATCCTCGCTTTTTTCGCCGGGAGCTTGCACGGTTACGTTAGACCCATCTTGCTTAACCAATGGTCATCGAGACCTGAACAAGATATGAAGATCTTTAATCGTATCGATCATAAATCATACATCCGTTACATGAAACGCAGCAGATTCTGCGTTTGCGCTAAAGGTTACGAGGTTAATAGCCCTAGAGTGGTTGAGTCGATTTTGTACGGTTGTGTTCCGGTGATTATCTCTGATAACTTTGTGCCACCGTTTCTTGAGATTCTGAATTGGGAATCTTTCGCAGTGTTTGTGCCGGAGAAAGAGATCCCGAATCTAAGGAAGATTCTGATATCGATTCCGGTGAGGAGATACGTGGAGATGCAAAAGAGGGTTTTGAAGGTTCAAAAACATTTCATGTGGCATGATGGTGAACCGGTTCGGTATGATATATTTCATATGATTCTTCATTCGGTTTGGTATAACCGAGTTTTTCAAACGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

546

Amino Acids

63.09

Weight (kDa)

9.55

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 217 - 496 2.9e-64 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 672
AciI CCGC 6 cut(s) 22, 391, 475, 566, 972, 1141
AclI AACGTT 2 cut(s) 206, 1634
AclWI GGATC 5 cut(s) 12, 479, 523, 785, 1456
AcsI RAATTY 3 cut(s) 161, 493, 834
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 3 cut(s) 120, 1013, 1364
AfiI CCNNNNNNNGG 4 cut(s) 512, 985, 1002, 1345
AgeI ACCGGT 1 cut(s) 1570
AgsI TTSAA 9 cut(s) 271, 371, 472, 628, 831, 842, 1534, 1541, 1631
AjnI CCWGG 2 cut(s) 139, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 7 cut(s) 109, 317, 535, 636, 643, 803, 1182
AluI AGCT 7 cut(s) 109, 317, 535, 636, 643, 803, 1182
Alw21I GWGCWC 3 cut(s) 111, 285, 1033
Alw26I GTCTC 4 cut(s) 543, 992, 1105, 1222
AlwI GGATC 5 cut(s) 12, 479, 523, 785, 1456
AlwNI CAGNNNCTG 1 cut(s) 1305
AoxI GGCC 2 cut(s) 31, 91
ApeKI GCWGC 1 cut(s) 1296
ApoI RAATTY 3 cut(s) 161, 493, 834
AsiGI ACCGGT 1 cut(s) 1570
Asp700I GAANNNNTTC 2 cut(s) 207, 1572
AspLEI GCGC 1 cut(s) 1316
AspS9I GGNCC 2 cut(s) 526, 1007
AsuC2I CCSGG 2 cut(s) 235, 1177
AsuHPI GGTGA 5 cut(s) 129, 961, 1390, 1510, 1577
AvaII GGWCC 2 cut(s) 526, 1007
AxyI CCTNAGG 1 cut(s) 708
BanII GRGCYC 2 cut(s) 111, 991
BarI GAAGNNNNNNTAC 2 cut(s) 1129, 1161
Bbv12I GWGCWC 3 cut(s) 111, 285, 1033
BbvI GCAGC 1 cut(s) 1308
BccI CCATC 7 cut(s) 436, 629, 708, 738, 1166, 1211, 1556
BciT130I CCWGG 2 cut(s) 141, 937
BcnI CCSGG 2 cut(s) 235, 1177
BcoDI GTCTC 4 cut(s) 543, 992, 1105, 1222
BfaI CTAG 2 cut(s) 1002, 1341
BfmI CTRYAG 2 cut(s) 46, 258
BglII AGATCT 1 cut(s) 1248
BisI GCNGC 4 cut(s) 476, 567, 1141, 1297
BlsI GCNGC 4 cut(s) 477, 568, 1142, 1298
BmcAI AGTACT 1 cut(s) 120
Bme1390I CCNGG 4 cut(s) 141, 235, 937, 1177
Bme18I GGWCC 2 cut(s) 526, 1007
BmgT120I GGNCC 2 cut(s) 526, 1007
BmiI GGNNCC 3 cut(s) 955, 990, 1008
BmrFI CCNGG 4 cut(s) 141, 235, 937, 1177
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 6 cut(s) 224, 236, 370, 743, 1032, 1506
BmuI ACTGGG 1 cut(s) 994
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 204, 1433
BpuMI CCSGG 2 cut(s) 235, 1177
Bsa29I ATCGAT 2 cut(s) 1263, 1490
BsaAI YACGTR 1 cut(s) 1510
BsaI GGTCTC 1 cut(s) 1222
BsaWI WCCGGW 3 cut(s) 1375, 1495, 1570
Bsc4I CCNNNNNNNGG 4 cut(s) 512, 985, 1002, 1345
Bse118I RCCGGY 1 cut(s) 1570
Bse1I ACTGG 2 cut(s) 116, 989
Bse21I CCTNAGG 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 141, 937
BseCI ATCGAT 2 cut(s) 1263, 1490
BseGI GGATG 5 cut(s) 227, 361, 749, 1158, 1278
BseLI CCNNNNNNNGG 4 cut(s) 512, 985, 1002, 1345
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 270, 699
BseNI ACTGG 2 cut(s) 116, 989
BseRI GAGGAG 1 cut(s) 1516
BseXI GCAGC 1 cut(s) 1308
BshFI GGCC 2 cut(s) 33, 93
BshTI ACCGGT 1 cut(s) 1570
BshVI ATCGAT 2 cut(s) 1263, 1490
BsiHKAI GWGCWC 3 cut(s) 111, 285, 1033
BsiSI CCGG 7 cut(s) 234, 1088, 1176, 1376, 1451, 1496, 1571
BslFI GGGAC 1 cut(s) 1020
BslI CCNNNNNNNGG 4 cut(s) 512, 985, 1002, 1345
BsmAI GTCTC 4 cut(s) 543, 992, 1105, 1222
BsmFI GGGAC 1 cut(s) 1020
BsnI GGCC 2 cut(s) 33, 93
Bso31I GGTCTC 1 cut(s) 1222
Bsp1286I GDGCHC 4 cut(s) 111, 285, 991, 1033
BspACI CCGC 6 cut(s) 22, 391, 475, 566, 972, 1141
BspANI GGCC 2 cut(s) 33, 93
BspCNI CTCAG 2 cut(s) 271, 700
BspDI ATCGAT 2 cut(s) 1263, 1490
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 955, 990, 1008
BspPI GGATC 5 cut(s) 12, 479, 523, 785, 1456
BspTNI GGTCTC 1 cut(s) 1222
BsrDI GCAATG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 1570
BsrI ACTGG 2 cut(s) 116, 989
BssAI RCCGGY 1 cut(s) 1570
Bst2UI CCWGG 2 cut(s) 141, 937
Bst4CI ACNGT 6 cut(s) 246, 872, 1011, 1190, 1367, 1407
Bst6I CTCTTC 3 cut(s) 266, 372, 1108
BstAPI GCANNNNNTGC 1 cut(s) 1305
BstBAI YACGTR 1 cut(s) 1510
BstC8I GCNNGC 2 cut(s) 976, 1184
BstDEI CTNAG 3 cut(s) 279, 708, 1472
BstF5I GGATG 5 cut(s) 227, 361, 749, 1158, 1278
BstHHI GCGC 1 cut(s) 1316
BstMAI GTCTC 4 cut(s) 543, 992, 1105, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 1172, 1305
BstNI CCWGG 2 cut(s) 141, 937
BstSCI CCNGG 4 cut(s) 139, 233, 935, 1175
BstSFI CTRYAG 2 cut(s) 46, 258
BstV1I GCAGC 1 cut(s) 1308
BstX2I RGATCY 3 cut(s) 790, 1248, 1461
BstYI RGATCY 3 cut(s) 790, 1248, 1461
Bsu15I ATCGAT 2 cut(s) 1263, 1490
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 2 cut(s) 33, 93
BsuTUI ATCGAT 2 cut(s) 1263, 1490
BtgZI GCGATG 1 cut(s) 901
BtsCI GGATG 5 cut(s) 227, 361, 749, 1158, 1278
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 1 cut(s) 1446
Cac8I GCNNGC 2 cut(s) 976, 1184
CaiI CAGNNNCTG 1 cut(s) 1305
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 1316
Cfr10I RCCGGY 1 cut(s) 1570
Cfr13I GGNCC 2 cut(s) 526, 1007
ClaI ATCGAT 2 cut(s) 1263, 1490
Csp6I GTAC 3 cut(s) 119, 1012, 1363
CspAI ACCGGT 1 cut(s) 1570
CviAII CATG 6 cut(s) 64, 860, 980, 1288, 1552, 1559
CviQI GTAC 3 cut(s) 119, 1012, 1363
DdeI CTNAG 3 cut(s) 279, 708, 1472
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
Eam1104I CTCTTC 3 cut(s) 266, 372, 1108
EarI CTCTTC 3 cut(s) 266, 372, 1108
Ecl136II GAGCTC 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 111, 991
Eco31I GGTCTC 1 cut(s) 1222
Eco32I GATATC 1 cut(s) 1488
Eco47I GGWCC 2 cut(s) 526, 1007
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 161, 834
EcoRII CCWGG 2 cut(s) 139, 935
EcoRV GATATC 1 cut(s) 1488
EcoT38I GRGCYC 2 cut(s) 111, 991
FaeI CATG 6 cut(s) 67, 863, 983, 1291, 1555, 1562
FaqI GGGAC 1 cut(s) 1020
FatI CATG 6 cut(s) 63, 859, 979, 1287, 1551, 1558
FauNDI CATATG 1 cut(s) 1593
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 476, 567, 1141, 1297
FokI GGATG 5 cut(s) 214, 348, 756, 1145, 1265
FriOI GRGCYC 2 cut(s) 111, 991
Fsp4HI GCNGC 4 cut(s) 476, 567, 1141, 1297
FspBI CTAG 2 cut(s) 1002, 1341
GlaI GCGC 1 cut(s) 1315
GluI GCNGC 4 cut(s) 476, 567, 1141, 1297
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 33, 93
HapII CCGG 7 cut(s) 234, 1088, 1176, 1376, 1451, 1496, 1571
HhaI GCGC 1 cut(s) 1316
Hin1II CATG 6 cut(s) 67, 863, 983, 1291, 1555, 1562
Hin6I GCGC 1 cut(s) 1314
HinP1I GCGC 1 cut(s) 1314
HindIII AAGCTT 1 cut(s) 315
HpaII CCGG 7 cut(s) 234, 1088, 1176, 1376, 1451, 1496, 1571
HphI GGTGA 5 cut(s) 129, 961, 1390, 1510, 1577
Hpy166II GTNNAC 3 cut(s) 526, 673, 1568
Hpy8I GTNNAC 3 cut(s) 526, 673, 1568
HpyAV CCTTC 8 cut(s) 91, 104, 674, 716, 734, 942, 1155, 1528
HpyCH4III ACNGT 6 cut(s) 246, 872, 1011, 1190, 1367, 1407
HpyCH4IV ACGT 6 cut(s) 206, 328, 855, 1194, 1509, 1634
HpyCH4V TGCA 9 cut(s) 215, 350, 361, 503, 545, 1023, 1111, 1186, 1519
HpyF10VI GCNNNNNNNGC 2 cut(s) 1172, 1305
HpyF3I CTNAG 3 cut(s) 279, 708, 1472
HpySE526I ACGT 6 cut(s) 206, 328, 855, 1194, 1509, 1634
Hsp92II CATG 6 cut(s) 67, 863, 983, 1291, 1555, 1562
HspAI GCGC 1 cut(s) 1314
LmnI GCTCC 5 cut(s) 411, 633, 959, 994, 1179
Lsp1109I GCAGC 1 cut(s) 1308
LweI GCATC 6 cut(s) 224, 236, 370, 743, 1032, 1506
MaeI CTAG 2 cut(s) 1002, 1341
MaeII ACGT 6 cut(s) 206, 328, 855, 1194, 1509, 1634
MaeIII GTNAC 4 cut(s) 1037, 1190, 1283, 1322
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 3 cut(s) 790, 1248, 1461
MhlI GDGCHC 4 cut(s) 111, 285, 991, 1033
MluCI AATT 7 cut(s) 161, 432, 493, 693, 834, 1128, 1423
MlyI GAGTC 2 cut(s) 857, 1361
MmeI TCCRAC 3 cut(s) 948, 1016, 1048
MroXI GAANNNNTTC 2 cut(s) 207, 1572
MseI TTAA 6 cut(s) 240, 537, 888, 1212, 1254, 1332
MslI CAYNNNNRTG 1 cut(s) 1563
MspI CCGG 7 cut(s) 234, 1088, 1176, 1376, 1451, 1496, 1571
MspR9I CCNGG 4 cut(s) 141, 235, 937, 1177
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 141, 937
MwoI GCNNNNNNNGC 2 cut(s) 1172, 1305
NciI CCSGG 2 cut(s) 235, 1177
NdeI CATATG 1 cut(s) 1593
NlaIII CATG 6 cut(s) 67, 863, 983, 1291, 1555, 1562
NlaIV GGNNCC 3 cut(s) 955, 990, 1008
PagI TCATGA 1 cut(s) 859
PceI AGGCCT 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 207, 1572
PfoI TCCNGGA 1 cut(s) 935
PinAI ACCGGT 1 cut(s) 1570
PkrI GCNGC 4 cut(s) 477, 568, 1142, 1298
PleI GAGTC 2 cut(s) 857, 1360
PpsI GAGTC 2 cut(s) 857, 1360
Ppu21I YACGTR 1 cut(s) 1510
Psp124BI GAGCTC 1 cut(s) 111
Psp1406I AACGTT 2 cut(s) 206, 1634
Psp6I CCWGG 2 cut(s) 139, 935
PspGI CCWGG 2 cut(s) 139, 935
PspN4I GGNNCC 3 cut(s) 955, 990, 1008
PspPI GGNCC 2 cut(s) 526, 1007
PstNI CAGNNNCTG 1 cut(s) 1305
PsuI RGATCY 3 cut(s) 790, 1248, 1461
RsaI GTAC 3 cut(s) 120, 1013, 1364
RsaNI GTAC 3 cut(s) 119, 1012, 1363
RseI CAYNNNNRTG 1 cut(s) 1563
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 240, 537, 888, 1212, 1254, 1332
SatI GCNGC 4 cut(s) 476, 567, 1141, 1297
Sau96I GGNCC 2 cut(s) 526, 1007
ScaI AGTACT 1 cut(s) 120
SchI GAGTC 2 cut(s) 857, 1361
ScrFI CCNGG 4 cut(s) 141, 235, 937, 1177
SduI GDGCHC 4 cut(s) 111, 285, 991, 1033
SfaNI GCATC 6 cut(s) 224, 236, 370, 743, 1032, 1506
SfcI CTRYAG 2 cut(s) 46, 258
SinI GGWCC 2 cut(s) 526, 1007
SmiMI CAYNNNNRTG 1 cut(s) 1563
SmlI CTYRAG 2 cut(s) 219, 1412
SmoI CTYRAG 2 cut(s) 219, 1412
Sse9I AATT 7 cut(s) 161, 432, 493, 693, 834, 1128, 1423
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 6 cut(s) 22, 391, 475, 566, 972, 1141
SspMI CTAG 2 cut(s) 1002, 1341
SstI GAGCTC 1 cut(s) 111
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 139, 233, 935, 1175
TaaI ACNGT 6 cut(s) 246, 872, 1011, 1190, 1367, 1407
TaiI ACGT 6 cut(s) 209, 331, 858, 1197, 1512, 1637
TaqI TCGA 4 cut(s) 1226, 1263, 1355, 1490
TasI AATT 7 cut(s) 161, 432, 493, 693, 834, 1128, 1423
TatI WGTACW 1 cut(s) 118
TauI GCSGC 3 cut(s) 478, 569, 1143
Tru1I TTAA 6 cut(s) 240, 537, 888, 1212, 1254, 1332
Tru9I TTAA 6 cut(s) 240, 537, 888, 1212, 1254, 1332
TscAI CASTG 1 cut(s) 1446
TseI GCWGC 1 cut(s) 1296
TspGWI ACGGA 2 cut(s) 1137, 1271
TspRI CASTG 1 cut(s) 1446
VpaK11BI GGWCC 2 cut(s) 526, 1007
XapI RAATTY 3 cut(s) 161, 493, 834
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 2 cut(s) 207, 1572
XspI CTAG 2 cut(s) 1002, 1341
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.