RchiOBHm_Chr6g0306171

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003090
Physical Location & Seq
Forward (+)
64916787 .. 64919870
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27519

Sequence Viewer

Length: 885 bp
ATGAACAAGCTTTTGCATCATAGTCGGACCTCGTTCCATTCAGTGATACCACAATGGTCTTCATCCATAGACCAAGAGATTCAATATGCAGCATCACGTATTGGAAATGCATCCTTTATAGAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAAAAGTGAAGGAGAAAGACCTATAATGCACACGCCAGTACTCATAGGCATATATGCTTCTGAGGGATGGTTCATGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAAAGACCCTCAGAAAGCGCACCTCTATTACTTACCTTTTAGCTCTCTAATGTTAGAGGAAAAACTACATATATGCTCCAACAGAAACAAAAAATACATGTCTAAGTGCATTAGGTCCCTTTGCAATGCTGATATGAAAGAAGGCTTTGTATTATGCAAGGATGTGTCTCTTCCTGAAACAAACGTTCATGTCAAAAATCCTCTAAGAAATCTAGGCAGCAACCGTCCTTCTGAGAGGTCGATACTTGCTTTCTTTGCTGGAAAGATGCATGGTTATGTTTGGCCGATTGTGCTACAGCATTGGGAAAACAAAGATCCCGACATGAAAATTTTTGGTCGATTACCTAGGGGAAAAGGCAACAAGAACTATGTGCACCATATGAAAAGCAGCAAGTACTGCATTTGTGCAAAAGGTTATGAAGTCAACAGTCCAAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCAATGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTCAATTGGGAGTCGTTTGCTGTTTTCGTCTTGGAGAAAGATATTCCGAATTTGAAGAAGATATTGCTTGCAATCCCAGAGAAGAGATATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

294

Amino Acids

34.16

Weight (kDa)

9.22

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 129 - 285 2.6e-35 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 122, 587
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 3 cut(s) 269, 606, 838
AfaI GTAC 2 cut(s) 210, 674
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 2 cut(s) 83, 844
AluBI AGCT 3 cut(s) 10, 253, 321
AluI AGCT 3 cut(s) 10, 253, 321
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 2 cut(s) 122, 587
AoxI GGCC 2 cut(s) 560, 723
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 4 cut(s) 89, 250, 495, 666
ApoI RAATTY 3 cut(s) 269, 606, 838
AspA2I CCTAGG 1 cut(s) 623
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 27, 393
AsuII TTCGAA 1 cut(s) 783
AvaII GGWCC 2 cut(s) 27, 393
AvrII CCTAGG 1 cut(s) 623
BaeGI GKGCMC 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 4 cut(s) 101, 262, 507, 678
BccI CCATC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 2 cut(s) 491, 624
BfmI CTRYAG 2 cut(s) 572, 881
BisI GCNGC 4 cut(s) 90, 251, 496, 667
BlnI CCTAGG 1 cut(s) 623
BlsI GCNGC 4 cut(s) 91, 252, 497, 668
BmcAI AGTACT 2 cut(s) 210, 674
Bme18I GGWCC 2 cut(s) 27, 393
BmgT120I GGNCC 2 cut(s) 27, 393
BmiI GGNNCC 1 cut(s) 395
BmsI GCATC 4 cut(s) 25, 101, 119, 534
BpiI GAAGAC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 783
BsaAI YACGTR 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 4 cut(s) 62, 110, 242, 445
BseJI GATNNNNATC 1 cut(s) 132
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 3 cut(s) 222, 302, 501
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 4 cut(s) 101, 262, 507, 678
BshFI GGCC 2 cut(s) 562, 725
BsiHKAI GWGCWC 1 cut(s) 654
BslFI GGGAC 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 2 cut(s) 562, 725
Bsp119I TTCGAA 1 cut(s) 783
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 3 cut(s) 127, 259, 592
BspANI GGCC 2 cut(s) 562, 725
BspCNI CTCAG 3 cut(s) 223, 301, 502
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 2 cut(s) 122, 587
BspT104I TTCGAA 1 cut(s) 783
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 3 cut(s) 127, 259, 592
BssT1I CCWWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 503, 707
Bst6I CTCTTC 2 cut(s) 453, 866
BstAPI GCANNNNNTGC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 783
BstC8I GCNNGC 1 cut(s) 858
BstDEI CTNAG 5 cut(s) 231, 288, 381, 482, 510
BstF5I GGATG 4 cut(s) 62, 110, 242, 445
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 3 cut(s) 130, 262, 595
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 3 cut(s) 127, 259, 592
BstMWI GCNNNNNNNGC 3 cut(s) 533, 568, 675
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 572, 881
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 4 cut(s) 101, 262, 507, 678
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 2 cut(s) 562, 725
BtsCI GGATG 4 cut(s) 62, 110, 242, 445
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 858
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 27, 393
Csp6I GTAC 2 cut(s) 209, 673
CviAII CATG 6 cut(s) 166, 244, 376, 467, 548, 601
CviJI RGCY 6 cut(s) 10, 253, 321, 423, 562, 725
CviKI_1 RGCY 6 cut(s) 10, 253, 321, 423, 562, 725
CviQI GTAC 2 cut(s) 209, 673
DdeI CTNAG 5 cut(s) 231, 288, 381, 482, 510
DpnI GATC 3 cut(s) 129, 261, 594
DpnII GATC 3 cut(s) 127, 259, 592
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 2 cut(s) 453, 866
EarI CTCTTC 2 cut(s) 453, 866
Eco130I CCWWGG 1 cut(s) 623
Eco32I GATATC 1 cut(s) 878
Eco47I GGWCC 2 cut(s) 27, 393
EcoO109I RGGNCCY 1 cut(s) 393
EcoRV GATATC 1 cut(s) 878
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 2 cut(s) 112, 549
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 6 cut(s) 169, 247, 379, 470, 551, 604
FaqI GGGAC 1 cut(s) 379
FatI CATG 6 cut(s) 165, 243, 375, 466, 547, 600
FauNDI CATATG 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 90, 251, 496, 667
FokI GGATG 4 cut(s) 49, 97, 249, 452
Fsp4HI GCNGC 4 cut(s) 90, 251, 496, 667
FspBI CTAG 2 cut(s) 491, 624
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 90, 251, 496, 667
HaeIII GGCC 2 cut(s) 562, 725
HhaI GCGC 1 cut(s) 298
Hin1II CATG 6 cut(s) 169, 247, 379, 470, 551, 604
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 79, 157, 800
Hpy166II GTNNAC 2 cut(s) 652, 703
Hpy188I TCNGA 7 cut(s) 27, 156, 232, 291, 511, 760, 837
Hpy188III TCNNGA 3 cut(s) 244, 452, 596
Hpy8I GTNNAC 2 cut(s) 652, 703
HpyAV CCTTC 3 cut(s) 173, 413, 516
HpyCH4III ACNGT 2 cut(s) 503, 707
HpyCH4IV ACGT 2 cut(s) 97, 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 568, 675
HpyF3I CTNAG 5 cut(s) 231, 288, 381, 482, 510
HpySE526I ACGT 2 cut(s) 97, 462
Hsp92II CATG 6 cut(s) 169, 247, 379, 470, 551, 604
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 3 cut(s) 127, 259, 592
LmnI GCTCC 3 cut(s) 148, 258, 359
LpnPI CCDG 4 cut(s) 219, 465, 522, 879
Lsp1109I GCAGC 4 cut(s) 101, 262, 507, 678
LweI GCATC 4 cut(s) 25, 101, 119, 534
MaeI CTAG 2 cut(s) 491, 624
MaeII ACGT 2 cut(s) 97, 462
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 129, 261, 594
MboI GATC 3 cut(s) 127, 259, 592
MboII GAAGA 5 cut(s) 51, 440, 856, 859, 883
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 5 cut(s) 269, 606, 763, 793, 838
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 2 cut(s) 5, 381
Mph1103I ATGCAT 2 cut(s) 112, 549
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 552
MunI CAATTG 1 cut(s) 793
MwoI GCNNNNNNNGC 3 cut(s) 533, 568, 675
NdeI CATATG 1 cut(s) 657
NdeII GATC 3 cut(s) 127, 259, 592
NlaIII CATG 6 cut(s) 169, 247, 379, 470, 551, 604
NlaIV GGNNCC 1 cut(s) 395
NsiI ATGCAT 2 cut(s) 112, 549
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 783
PagI TCATGA 1 cut(s) 243
PciI ACATGT 1 cut(s) 375
PfeI GAWTC 2 cut(s) 79, 157
PkrI GCNGC 4 cut(s) 91, 252, 497, 668
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 393
PscI ACATGT 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 2 cut(s) 27, 393
PspPPI RGGWCCY 1 cut(s) 393
PsuI RGATCY 1 cut(s) 592
RsaI GTAC 2 cut(s) 210, 674
RsaNI GTAC 2 cut(s) 209, 673
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 90, 251, 496, 667
Sau3AI GATC 3 cut(s) 127, 259, 592
Sau96I GGNCC 2 cut(s) 27, 393
ScaI AGTACT 2 cut(s) 210, 674
SchI GAGTC 1 cut(s) 809
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 4 cut(s) 25, 101, 119, 534
SfcI CTRYAG 2 cut(s) 572, 881
SfuI TTCGAA 1 cut(s) 783
SinI GGWCC 2 cut(s) 27, 393
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 5 cut(s) 269, 606, 763, 793, 838
SspMI CTAG 2 cut(s) 491, 624
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 2 cut(s) 503, 707
TaiI ACGT 2 cut(s) 100, 465
TaqI TCGA 3 cut(s) 518, 616, 783
TasI AATT 5 cut(s) 269, 606, 763, 793, 838
TatI WGTACW 2 cut(s) 208, 672
TfiI GAWTC 2 cut(s) 79, 157
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 48
TseI GCWGC 4 cut(s) 89, 250, 495, 666
TspDTI ATGAA 9 cut(s) 17, 51, 232, 260, 428, 455, 617, 674, 711
TspRI CASTG 1 cut(s) 48
VneI GTGCAC 1 cut(s) 650
VpaK11BI GGWCC 2 cut(s) 27, 393
XapI RAATTY 3 cut(s) 269, 606, 838
XceI RCATGY 1 cut(s) 379
XmaJI CCTAGG 1 cut(s) 623
XspI CTAG 2 cut(s) 491, 624
ZrmI AGTACT 2 cut(s) 210, 674
Zsp2I ATGCAT 2 cut(s) 112, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.