Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Forward (+)

62986203 .. 62988212

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG460500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTCAGGAGCTTTTATCTTTTTGTCCAACAGAAGCGAAGAGATTGCTGTGGATTGTGGGGATGTTGTTTGCTTTGATTTTGGTCCTCCAGCATCTTGAACTTCCATACGGTAGTAATTTATCATCTGTACTTACGGCTGGACAGGTTCCAGTGGAGAAAAATAGTAGCTTCCGAGCTAGAGACCCATCATCTACTGTTAATATGGTTGGCAATGAGTCAGTTTCTAATGGTTTGGACGATACTGCTACACATCCATTTCATGAGATAGCTAACAATAATAAGACTTCTGATTTGGTATCAGACGGAAGTGGAGGCTCAGAAAGAACTTTAGAAATAGACGAGGATGAAGATGAATCTGGAAGTTTGGTAAAGGAAAATACTACCGATATTACTCTTTCAGAAGGGAGGACTGAGAAGGGGAGTAATACTACAGACCCAGGTGGAAATGAAAATACTGGTTTTCCAACCACTCCACCCGCATACCCACGGGTGAATCCATCACTTAATACATCTCCTGTAGTTGTTGAAACAGATGTTGGAGCTCCCATTATATCTGTTGACTCAAATGTGACTTTAGTAGAGAAAGATCAAACACCCTCTTCTGAGAAAACTGACAAGTCTGAGCAACTGCATAGTGGCCTCAACGAAACAGGAAAGGATTCTTCAGTGCCCAGAGTCCCTGTAGTGAACAAAGTGCCAGAGGTTCCGACATTGGAAGTATATACAATATCTGATATGAACAAGCTGTTACATCATAGTTGGACCTCGTACCATTCAGTGATACCACAATGGTCTTCACCCGCTGACCAAGAGATGCAAGATGCAGCATCACAGATTGAAAATGCATCCATCATAAAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCTATGTTTAAAAGGCAGCATTCAAATCCAAACTTCAGTTCATATTCTAACACATCATATCCATATGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

324

Amino Acids

35.33

Weight (kDa)

4.64

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	480, 804
AclWI	GGATC	1 cut(s)	860
AcuI	CTGAAG	2 cut(s)	651, 919
AfaI	GTAC	2 cut(s)	132, 773
AgsI	TTSAA	4 cut(s)	101, 530, 842, 924
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	4 cut(s)	522, 554, 922, 954
AluBI	AGCT	6 cut(s)	13, 171, 179, 272, 545, 748
AluI	AGCT	6 cut(s)	13, 171, 179, 272, 545, 748
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	1 cut(s)	640
ApeKI	GCWGC	2 cut(s)	827, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
Asp700I	GAANNNNTTC	1 cut(s)	661
AspS9I	GGNCC	2 cut(s)	85, 765
AsuHPI	GGTGA	2 cut(s)	505, 792
AvaII	GGWCC	2 cut(s)	85, 765
BaeGI	GKGCMC	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	839, 928
BccI	CCATC	3 cut(s)	196, 508, 860
BceAI	ACGGC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	3 cut(s)	432, 519, 684
BisI	GCNGC	2 cut(s)	828, 917
BlsI	GCNGC	2 cut(s)	829, 918
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	2 cut(s)	85, 765
BmgT120I	GGNCC	2 cut(s)	85, 765
BmiI	GGNNCC	2 cut(s)	150, 708
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	5 cut(s)	103, 807, 814, 839, 857
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	439, 488
Bse1I	ACTGG	2 cut(s)	152, 463
Bse3DI	GCAATG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	439, 488
BseGI	GGATG	4 cut(s)	69, 253, 352, 848
BseJI	GATNNNNATC	1 cut(s)	870
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	4 cut(s)	333, 405, 597, 615
BseNI	ACTGG	2 cut(s)	152, 463
BseRI	GAGGAG	1 cut(s)	873
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	2 cut(s)	839, 928
BshFI	GGCC	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	919
BsnI	GGCC	1 cut(s)	642
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	547, 675
Bsp143I	GATC	2 cut(s)	589, 865
BspACI	CCGC	2 cut(s)	480, 804
BspANI	GGCC	1 cut(s)	642
BspCNI	CTCAG	4 cut(s)	332, 406, 598, 616
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	150, 708
BspPI	GGATC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	152, 463
BssECI	CCNNGG	2 cut(s)	439, 488
BssMI	GATC	2 cut(s)	589, 865
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	113, 199
Bst6I	CTCTTC	2 cut(s)	35, 607
BstDEI	CTNAG	4 cut(s)	319, 414, 606, 624
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	4 cut(s)	69, 253, 352, 848
BstKTI	GATC	2 cut(s)	592, 868
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	589, 865
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	3 cut(s)	432, 519, 684
BstSLI	GKGCMC	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	839, 928
BstV2I	GAAGAC	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	69, 253, 352, 848
BtsIMutI	CAGTG	3 cut(s)	159, 675, 786
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	85, 765
Csp6I	GTAC	2 cut(s)	131, 772
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	9 cut(s)	13, 140, 171, 179, 272, 318, 545, 642, 748
CviKI_1	RGCY	9 cut(s)	13, 140, 171, 179, 272, 318, 545, 642, 748
CviQI	GTAC	2 cut(s)	131, 772
DdeI	CTNAG	4 cut(s)	319, 414, 606, 624
DpnI	GATC	2 cut(s)	591, 867
DpnII	GATC	2 cut(s)	589, 865
DraI	TTTAAA	1 cut(s)	910
Eam1104I	CTCTTC	2 cut(s)	35, 607
EarI	CTCTTC	2 cut(s)	35, 607
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	85, 765
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	651, 919
EcoICRI	GAGCTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	1 cut(s)	266
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	1 cut(s)	262
FauI	CCCGC	2 cut(s)	487, 811
FauNDI	CATATG	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	828, 917
FokI	GGATG	4 cut(s)	76, 240, 359, 835
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	828, 917
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	828, 917
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	642
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	7 cut(s)	218, 356, 496, 563, 662, 678, 895
HphI	GGTGA	2 cut(s)	505, 792
Hpy166II	GTNNAC	2 cut(s)	562, 691
Hpy188III	TCNNGA	4 cut(s)	8, 98, 263, 360
Hpy8I	GTNNAC	2 cut(s)	562, 691
HpyAV	CCTTC	2 cut(s)	398, 412
HpyCH4III	ACNGT	2 cut(s)	113, 199
HpyCH4V	TGCA	4 cut(s)	634, 820, 827, 848
HpyF3I	CTNAG	4 cut(s)	319, 414, 606, 624
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	589, 865
LmnI	GCTCC	4 cut(s)	10, 542, 550, 886
Lsp1109I	GCAGC	2 cut(s)	839, 928
LweI	GCATC	5 cut(s)	103, 807, 814, 839, 857
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	571, 750
MalI	GATC	2 cut(s)	591, 867
MboI	GATC	2 cut(s)	589, 865
MboII	GAAGA	5 cut(s)	52, 362, 594, 657, 789
MhlI	GDGCHC	2 cut(s)	547, 675
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	3 cut(s)	227, 557, 687
MmeI	TCCRAC	5 cut(s)	53, 491, 520, 734, 743
MnlI	CCTC	9 cut(s)	98, 308, 337, 402, 610, 653, 697, 778, 894
Mph1103I	ATGCAT	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	661
MseI	TTAA	3 cut(s)	201, 507, 909
MspA1I	CMGCKG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	2 cut(s)	589, 865
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	150, 708
NmuCI	GTSAC	1 cut(s)	571
NsiI	ATGCAT	1 cut(s)	850
PagI	TCATGA	1 cut(s)	262
PctI	GAATGC	1 cut(s)	919
PdmI	GAANNNNTTC	1 cut(s)	661
PfeI	GAWTC	4 cut(s)	356, 496, 662, 895
PkrI	GCNGC	2 cut(s)	829, 918
PleI	GAGTC	3 cut(s)	226, 557, 686
PpsI	GAGTC	3 cut(s)	226, 557, 686
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	150, 708
PspPI	GGNCC	2 cut(s)	85, 765
RsaI	GTAC	2 cut(s)	132, 773
RsaNI	GTAC	2 cut(s)	131, 772
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	201, 507, 909
SatI	GCNGC	2 cut(s)	828, 917
Sau3AI	GATC	2 cut(s)	589, 865
Sau96I	GGNCC	2 cut(s)	85, 765
SchI	GAGTC	3 cut(s)	227, 557, 687
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	2 cut(s)	547, 675
SfaNI	GCATC	5 cut(s)	103, 807, 814, 839, 857
SfcI	CTRYAG	3 cut(s)	432, 519, 684
SinI	GGWCC	2 cut(s)	85, 765
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	480, 804
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	113, 199
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	4 cut(s)	356, 496, 662, 895
Tru1I	TTAA	3 cut(s)	201, 507, 909
Tru9I	TTAA	3 cut(s)	201, 507, 909
TscAI	CASTG	3 cut(s)	159, 675, 786
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	827, 916
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	6 cut(s)	251, 363, 369, 465, 755, 930
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	3 cut(s)	159, 675, 786
VpaK11BI	GGWCC	2 cut(s)	85, 765
XmnI	GAANNNNTTC	1 cut(s)	661
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.