Rh6BG441200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003090
Physical Location & Seq
Reverse (-)
65914890 .. 65919441
4552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG441200.1

Sequence Viewer

Length: 1287 bp
ATGGGTCAGGAGCTTTTATCTTTTTGTCCAACAGAAGTGAAGAGATTGCTGTGGATTGTGGGGATGTTGTTTGCTTTGATTTTGGTCCTCCAGCATCTTGAACTTCCATACGGTAGTAATTTATCATCTGTACTTACGGCTGGACAGGTTCCAGTGGAGAAAAATAGTAGCTTCCGAGCTAGAGACCCATCATCTACTGTTAATATGGTTGGCAATGAGTCAGTTTCTAATGGTTTGGACGATACTGCTACACATCCATTTCATGAGATAGCTAACAATAATAAGACTTCTGATTTGGTATCAGACGGAAGTGGAGGCTCAGAAAGAACTTTAGAAATAGACGAGGATGAAGATGAATCTGGAAGTTTGGTAAAGGAAAATACTACCGATATTACTCTTTCAGAAGGGAGGACTGAGAAGGGGAGTAATACTACAGACCCAGGTGGAAATGAAAATACTGGTTTTCCAACCACTCCACCCGCATACCCACGGGTGAATCCATCACTTAATACATCTCCTGTAGTTGTTGAAACAGATGTTGGAGCTCCCATTATATCTGTTGACTCAAATGTGACTTTAGTAGAGAAAGATCAAACGCCCTCTTCTGAGAAAACTGACAAATCTGAGCAACTGCATAGTGGCCTCAACGAAACAGGAAAGGATTCTTCAGTGCCCAGAGTCCCTGTAGTGAACAAAGTGCCAGAGGTTCCGACATTGGAAGTATATACAATATCTGATATGAACAAGCTGTTACATCATAGTTGGACCTCGTACCATTCAGTGATACCACAATGGTCTTCACCCGCTGACCAAGAGATGCAAGATGCAGCATCACAGATTGAAAATGCACCCATCATAAAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCTATGTTTAAAAGGAGCTATGAATTAATGGAGAGCACTCTTAAAGTATACGTTTACAGGGAAGGACAAAGACCTATAATGCATACACCGGTACTCAAAGGGATATATGCTTCTGAGGGATGGTTCATGAAGCAGCTCGAAGATCACAAAAGATTTGTTACTAAAGACCCTCAGAAAGCGCACCTGTATTACTTACCTTTTAGCTCTCGAATGTTAGAGGAAAGACTATATGTGCAAGGATCACACAGTCATAAGAATCTAATAGAGTATTTGAAGAACTACTTGGACATGATTGCAGGGAAATATCCTTTCTGGAATAGAACTGGTGGAGCAGATCATTTCCTTGTTGCTTGCCATGACTGGGTATGCTTGTTATCATTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

428

Amino Acids

47.8

Weight (kDa)

5.17

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 311 - 421 7.7e-23 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 948
AciI CCGC 2 cut(s) 480, 804
AclWI GGATC 2 cut(s) 860, 1147
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 3 cut(s) 132, 773, 993
AfiI CCNNNNNNNGG 1 cut(s) 1261
AgeI ACCGGT 1 cut(s) 988
AgsI TTSAA 4 cut(s) 101, 530, 842, 1174
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 1166, 1198
AluBI AGCT 9 cut(s) 13, 171, 179, 272, 545, 748, 918, 1036, 1104
AluI AGCT 9 cut(s) 13, 171, 179, 272, 545, 748, 918, 1036, 1104
Alw21I GWGCWC 2 cut(s) 547, 938
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 2 cut(s) 860, 1147
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 2 cut(s) 827, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AseI ATTAAT 1 cut(s) 926
AsiGI ACCGGT 1 cut(s) 988
Asp700I GAANNNNTTC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 1081
AspS9I GGNCC 2 cut(s) 85, 765
AsuHPI GGTGA 2 cut(s) 505, 792
AvaII GGWCC 2 cut(s) 85, 765
BaeGI GKGCMC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 547, 938
BbvI GCAGC 2 cut(s) 839, 1045
BccI CCATC 4 cut(s) 196, 508, 860, 1014
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 3 cut(s) 432, 519, 684
BisI GCNGC 2 cut(s) 828, 1034
BlsI GCNGC 2 cut(s) 829, 1035
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 2 cut(s) 85, 765
BmgT120I GGNCC 2 cut(s) 85, 765
BmiI GGNNCC 2 cut(s) 150, 708
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 4 cut(s) 103, 807, 814, 839
BmuI ACTGGG 1 cut(s) 1270
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 439, 488
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 1 cut(s) 1261
Bse118I RCCGGY 1 cut(s) 988
Bse1I ACTGG 4 cut(s) 152, 463, 1228, 1265
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 439, 488
BseGI GGATG 4 cut(s) 69, 253, 352, 1025
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 1261
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 6 cut(s) 333, 405, 597, 615, 1005, 1085
BseNI ACTGG 4 cut(s) 152, 463, 1228, 1265
BseRI GAGGAG 1 cut(s) 873
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 2 cut(s) 839, 1045
BshFI GGCC 1 cut(s) 642
BshTI ACCGGT 1 cut(s) 988
BsiHKAI GWGCWC 2 cut(s) 547, 938
BsiSI CCGG 1 cut(s) 989
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 1261
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 1 cut(s) 642
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 3 cut(s) 547, 675, 938
Bsp143I GATC 5 cut(s) 589, 865, 1042, 1139, 1234
BspACI CCGC 2 cut(s) 480, 804
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 6 cut(s) 332, 406, 598, 616, 1006, 1084
BspHI TCATGA 2 cut(s) 262, 1026
BspLI GGNNCC 2 cut(s) 150, 708
BspPI GGATC 2 cut(s) 860, 1147
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 988
BsrI ACTGG 4 cut(s) 152, 463, 1228, 1265
BssAI RCCGGY 1 cut(s) 988
BssECI CCNNGG 2 cut(s) 439, 488
BssMI GATC 5 cut(s) 589, 865, 1042, 1139, 1234
BssNAI GTATAC 1 cut(s) 949
Bst1107I GTATAC 1 cut(s) 949
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 113, 199, 1148
Bst6I CTCTTC 2 cut(s) 35, 607
BstC8I GCNNGC 1 cut(s) 1252
BstDEI CTNAG 6 cut(s) 319, 414, 606, 624, 1014, 1071
BstDSI CCRYGG 1 cut(s) 488
BstF5I GGATG 4 cut(s) 69, 253, 352, 1025
BstHHI GCGC 1 cut(s) 1081
BstKTI GATC 5 cut(s) 592, 868, 1045, 1142, 1237
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 5 cut(s) 589, 865, 1042, 1139, 1234
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 3 cut(s) 432, 519, 684
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 839, 1045
BstV2I GAAGAC 1 cut(s) 789
BstZ17I GTATAC 1 cut(s) 949
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 1 cut(s) 488
BtsCI GGATG 4 cut(s) 69, 253, 352, 1025
BtsIMutI CAGTG 3 cut(s) 159, 675, 786
Cac8I GCNNGC 1 cut(s) 1252
CciI TCATGA 2 cut(s) 262, 1026
CfoI GCGC 1 cut(s) 1081
Cfr10I RCCGGY 1 cut(s) 988
Cfr13I GGNCC 2 cut(s) 85, 765
Csp6I GTAC 3 cut(s) 131, 772, 992
CspAI ACCGGT 1 cut(s) 988
CviAII CATG 4 cut(s) 263, 1027, 1189, 1256
CviQI GTAC 3 cut(s) 131, 772, 992
DdeI CTNAG 6 cut(s) 319, 414, 606, 624, 1014, 1071
DpnI GATC 5 cut(s) 591, 867, 1044, 1141, 1236
DpnII GATC 5 cut(s) 589, 865, 1042, 1139, 1234
DraI TTTAAA 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 35, 607
EarI CTCTTC 2 cut(s) 35, 607
Ecl136II GAGCTC 1 cut(s) 545
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 85, 765
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 547
FaeI CATG 4 cut(s) 266, 1030, 1192, 1259
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 1 cut(s) 665
FatI CATG 4 cut(s) 262, 1026, 1188, 1255
FauI CCCGC 2 cut(s) 487, 811
FblI GTMKAC 1 cut(s) 948
Fnu4HI GCNGC 2 cut(s) 828, 1034
FokI GGATG 4 cut(s) 76, 240, 359, 1032
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 2 cut(s) 828, 1034
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 1080
GluI GCNGC 2 cut(s) 828, 1034
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 642
HapII CCGG 1 cut(s) 989
HhaI GCGC 1 cut(s) 1081
Hin1II CATG 4 cut(s) 266, 1030, 1192, 1259
Hin6I GCGC 1 cut(s) 1079
HinP1I GCGC 1 cut(s) 1079
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 8 cut(s) 218, 356, 496, 563, 662, 678, 895, 1156
HpaII CCGG 1 cut(s) 989
HphI GGTGA 2 cut(s) 505, 792
Hpy166II GTNNAC 4 cut(s) 562, 691, 949, 955
Hpy188III TCNNGA 7 cut(s) 8, 98, 263, 360, 1027, 1107, 1213
Hpy8I GTNNAC 4 cut(s) 562, 691, 949, 955
HpyAV CCTTC 3 cut(s) 398, 412, 956
HpyCH4III ACNGT 3 cut(s) 113, 199, 1148
HpyCH4IV ACGT 1 cut(s) 951
HpyCH4V TGCA 7 cut(s) 634, 820, 827, 848, 982, 1135, 1196
HpyF3I CTNAG 6 cut(s) 319, 414, 606, 624, 1014, 1071
HpySE526I ACGT 1 cut(s) 951
Hsp92II CATG 4 cut(s) 266, 1030, 1192, 1259
HspAI GCGC 1 cut(s) 1079
Kzo9I GATC 5 cut(s) 589, 865, 1042, 1139, 1234
LmnI GCTCC 6 cut(s) 10, 542, 550, 886, 915, 1229
Lsp1109I GCAGC 2 cut(s) 839, 1045
LweI GCATC 4 cut(s) 103, 807, 814, 839
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 951
MaeIII GTNAC 3 cut(s) 571, 750, 1057
MalI GATC 5 cut(s) 591, 867, 1044, 1141, 1236
MboI GATC 5 cut(s) 589, 865, 1042, 1139, 1234
MboII GAAGA 7 cut(s) 52, 362, 594, 657, 789, 1052, 1186
MhlI GDGCHC 3 cut(s) 547, 675, 938
MluCI AATT 2 cut(s) 118, 923
MlyI GAGTC 3 cut(s) 227, 557, 687
MmeI TCCRAC 5 cut(s) 53, 491, 520, 734, 743
Mph1103I ATGCAT 1 cut(s) 984
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 5 cut(s) 201, 507, 909, 926, 942
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
NdeII GATC 5 cut(s) 589, 865, 1042, 1139, 1234
NlaIII CATG 4 cut(s) 266, 1030, 1192, 1259
NlaIV GGNNCC 2 cut(s) 150, 708
NmuCI GTSAC 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 984
PagI TCATGA 2 cut(s) 262, 1026
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 5 cut(s) 356, 496, 662, 895, 1156
PinAI ACCGGT 1 cut(s) 988
PkrI GCNGC 2 cut(s) 829, 1035
PleI GAGTC 3 cut(s) 226, 557, 686
PpsI GAGTC 3 cut(s) 226, 557, 686
PshBI ATTAAT 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 150, 708
PspPI GGNCC 2 cut(s) 85, 765
RsaI GTAC 3 cut(s) 132, 773, 993
RsaNI GTAC 3 cut(s) 131, 772, 992
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 201, 507, 909, 926, 942
SatI GCNGC 2 cut(s) 828, 1034
Sau3AI GATC 5 cut(s) 589, 865, 1042, 1139, 1234
Sau96I GGNCC 2 cut(s) 85, 765
SchI GAGTC 3 cut(s) 227, 557, 687
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 3 cut(s) 547, 675, 938
SfaNI GCATC 4 cut(s) 103, 807, 814, 839
SfcI CTRYAG 3 cut(s) 432, 519, 684
SinI GGWCC 2 cut(s) 85, 765
Sse9I AATT 2 cut(s) 118, 923
SsiI CCGC 2 cut(s) 480, 804
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 113, 199, 1148
TaiI ACGT 1 cut(s) 954
TaqI TCGA 2 cut(s) 1038, 1108
TasI AATT 2 cut(s) 118, 923
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 5 cut(s) 356, 496, 662, 895, 1156
Tru1I TTAA 5 cut(s) 201, 507, 909, 926, 942
Tru9I TTAA 5 cut(s) 201, 507, 909, 926, 942
TscAI CASTG 3 cut(s) 159, 675, 786
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 2 cut(s) 827, 1033
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 8 cut(s) 251, 363, 369, 465, 755, 936, 1015, 1043
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 3 cut(s) 159, 675, 786
VpaK11BI GGWCC 2 cut(s) 85, 765
VspI ATTAAT 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 948
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.