Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Reverse (-)

26293034 .. 26293719

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35652.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTGCTGTGCTTGTAGTTCTCCGGCGTCTTCATCCTTTGTCATCAGTATTTTCGGTTAAAAAGGTTCCGGTGGAAGGAAACACCGGCTTCCAAGCTGGAGATCCACCATCGAATGTTGATATGGTTGGTAATGTGTCAGCTTCTAATGATTTGAACTACACTGCTACATATGCATCTCATGAGATTGCTAATACTAGCACCTCTAGCTTTGTATCAGAAGAAAGTGGAGGCTTAGACAGAACTATAGACATAGGAGTTCACAATATATCTGTTCAATCAAACGGGACGTTAGAGGAGAAAGATGGAACAACCTCTTCTGATGAGAAAACCAAAAACTTTGAGCATACTGACCTCAACAGAACGCGAAATAGTTCTCCAGTGACCAGAGTACCTGAGGTGAACAAAGGGTCGGGGGTTCCAAGTCCAATGTTGGAAGTATATACGATATCTGATATGAACAAGCTGTTGCATCATAGTCGGACCTCATACGATTCAGTAGTACCACAATGGTCTTCATCCGTTGACAAAGAGATTCAATATGCAGCATTGCAGATAGAAATGCACCCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

192

Amino Acids

20.81

Weight (kDa)

5.28

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	367
AclWI	GGATC	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	393, 504
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	157, 278, 539
AluBI	AGCT	4 cut(s)	98, 143, 210, 466
AluI	AGCT	4 cut(s)	98, 143, 210, 466
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	483
AxyI	CCTNAGG	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BbsI	GAAGAC	2 cut(s)	23, 507
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	2 cut(s)	118, 299
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BfaI	CTAG	2 cut(s)	198, 207
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	2 cut(s)	69, 420
BmsI	GCATC	2 cut(s)	185, 481
BpiI	GAAGAC	2 cut(s)	23, 507
BpmI	CTGGAG	2 cut(s)	120, 363
BsaHI	GRCGYC	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	34, 518
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	367
BsiSI	CCGG	3 cut(s)	25, 71, 87
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	69, 420
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	235, 396
BstF5I	GGATG	2 cut(s)	34, 518
BstFNI	CGCG	1 cut(s)	367
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 207
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	2 cut(s)	23, 507
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	34, 518
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 387
CciI	TCATGA	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	483
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	392, 503
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	6 cut(s)	90, 98, 143, 210, 234, 466
CviKI_1	RGCY	6 cut(s)	90, 98, 143, 210, 234, 466
CviQI	GTAC	2 cut(s)	392, 503
DdeI	CTNAG	2 cut(s)	235, 396
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	483
Eco81I	CCTNAGG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	1 cut(s)	185
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	2 cut(s)	21, 505
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	2 cut(s)	198, 207
GluI	GCNGC	1 cut(s)	546
GsuI	CTGGAG	2 cut(s)	120, 363
HapII	CCGG	3 cut(s)	25, 71, 87
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	494, 535
HpaII	CCGG	3 cut(s)	25, 71, 87
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	262, 403, 526
Hpy188I	TCNGA	4 cut(s)	220, 322, 454, 483
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	3 cut(s)	262, 403, 526
HpyAV	CCTTC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	5 cut(s)	176, 472, 545, 553, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 207
HpyF3I	CTNAG	2 cut(s)	235, 396
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	7 cut(s)	38, 84, 84, 100, 393, 400, 408
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	2 cut(s)	185, 481
MaeI	CTAG	2 cut(s)	198, 207
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	4 cut(s)	23, 233, 309, 507
MflI	RGATCY	1 cut(s)	103
MmeI	TCCRAC	2 cut(s)	414, 461
MnlI	CCTC	7 cut(s)	214, 224, 289, 325, 365, 391, 496
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	1 cut(s)	60
MspI	CCGG	3 cut(s)	25, 71, 87
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	173, 207
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	2 cut(s)	69, 420
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	178
PagI	TCATGA	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	494, 535
PkrI	GCNGC	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	69, 420
PspPI	GGNCC	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	393, 504
RsaNI	GTAC	2 cut(s)	392, 503
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	185, 481
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	198, 207
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	494, 535
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	169, 387
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	23, 473, 507
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	169, 387
VpaK11BI	GGWCC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	198, 207
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.