Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Forward (+)

64278179 .. 64280864

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTTCTGGGGCTTTTTTCTTTTTGTCCAACGGAAACCAGGAGATTGCTGTGGATTGTGGGGATGATGTTTACTGTGCTTATAGTTATCCATCATCTTCATACATTACCATATGTATTTTCGGCTAAAAAGATTCCGGTGGAAGGGAAAACCAGCTTCCAAGCTAAAGATGTTGATATAGTTGTGGAGAAAGATCGAACAACATCTTCTGAGAAAACCCAAAATTCTGAGCATACCGACCTGAATGGAACAGGAAATGGTTCTGCAGTGACCAGAGTCCCTGAAGAGAACAAAGGGTCAGAGATTCCAATATTGGATGTATATACGATATCTGATATGAACAAGCTTTTGCATCATAGTCGGACCTCGTTCCATTCAGTGATACCACAATGGTCTTCATCCATAGACCAAGAGATTCAATATGCAGCATCACGTATTGGAAATGCATCCTTTATAGAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAAAAGGAGCTATGAATTAATGGAGAGCACTCTTAAGTATACATTTACAGTGAAGGAGAAAGACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

191

Amino Acids

21.75

Weight (kDa)

6.38

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	545
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	156, 164, 346, 516
AluI	AGCT	4 cut(s)	156, 164, 346, 516
Alw21I	GWGCWC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	223
AseI	ATTAAT	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	539
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	361, 437, 455
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	40
BseGI	GGATG	4 cut(s)	69, 322, 398, 446
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	201, 219
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	193, 463
BspCNI	CTCAG	2 cut(s)	202, 220
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	539
BssMI	GATC	2 cut(s)	193, 463
BssNAI	GTATAC	1 cut(s)	546
Bst1107I	GTATAC	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	76, 556
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	210, 228
BstF5I	GGATG	4 cut(s)	69, 322, 398, 446
BstKTI	GATC	2 cut(s)	196, 466
BstMBI	GATC	2 cut(s)	193, 463
BstNI	CCWGG	1 cut(s)	40
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	387
BstZ17I	GTATAC	1 cut(s)	546
BtsCI	GGATG	4 cut(s)	69, 322, 398, 446
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	273, 384, 561
Cfr13I	GGNCC	1 cut(s)	363
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	6 cut(s)	13, 125, 156, 164, 346, 516
CviKI_1	RGCY	6 cut(s)	13, 125, 156, 164, 346, 516
DdeI	CTNAG	2 cut(s)	210, 228
DpnI	GATC	2 cut(s)	195, 465
DpnII	GATC	2 cut(s)	193, 463
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	1 cut(s)	505
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	4 cut(s)	76, 329, 385, 433
Fsp4HI	GCNGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	426
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	133, 276, 304, 415, 493
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	72, 546
Hpy188I	TCNGA	6 cut(s)	211, 229, 301, 334, 363, 492
Hpy8I	GTNNAC	2 cut(s)	72, 546
HpyAV	CCTTC	2 cut(s)	137, 553
HpyCH4III	ACNGT	2 cut(s)	76, 556
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	266, 352, 425, 446
HpyF3I	CTNAG	2 cut(s)	210, 228
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	193, 463
LmnI	GCTCC	2 cut(s)	484, 513
LpnPI	CCDG	8 cut(s)	25, 52, 150, 166, 237, 254, 286, 294
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	3 cut(s)	361, 437, 455
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	195, 465
MboI	GATC	2 cut(s)	193, 463
MboII	GAAGA	4 cut(s)	89, 198, 296, 387
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	2 cut(s)	223, 521
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	53, 341
MnlI	CCTC	2 cut(s)	376, 492
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	3 cut(s)	507, 524, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	193, 463
NlaIII	CATG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	4 cut(s)	133, 304, 415, 493
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	507, 524, 540
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	193, 463
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	8 cut(s)	158, 166, 243, 348, 368, 436, 518, 573
SfaNI	GCATC	3 cut(s)	361, 437, 455
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	223, 521
SspI	AATATT	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	76, 556
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	223, 521
TfiI	GAWTC	4 cut(s)	133, 304, 415, 493
Tru1I	TTAA	3 cut(s)	507, 524, 540
Tru9I	TTAA	3 cut(s)	507, 524, 540
TscAI	CASTG	3 cut(s)	273, 384, 561
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	89, 353, 387, 534
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	273, 384, 561
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	363
VspI	ATTAAT	1 cut(s)	524
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.