FvH4_2g35651

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003090
Physical Location & Seq
Reverse (-)
26291803 .. 26292989
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35651.t1

Sequence Viewer

Length: 1023 bp
ATGTTTAAAAGGAGCTATGAACTAATGGAGAGCACTCTTAAAGTATACATATACAGTGAAGGAGAAAGACCTATAATGCACACGCCGGTGCTCAAAGGCATATATGGTTCTGAGGGATGGTTCATGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAAAGACCCTCAGAAAGCACACCTCTATTACTTACCGTTTAGCTCTGTAATGTTAGAGGAAAAATTATATGTGCCAAATTCACATAGTTTTAAGAATTTCATAGAGTATTTGAAGAACTACATCGACCTGATTGCAGGGAAATATTCTTTCTGGAACAGAGCTGGTGGAGCAGATCATTTCCTTGTTGCTTGTCATGACTGGGCTCCAACAGAAACAAAGAAGTACATGTCTAAGTGCATTAGGTCCCTTTGCAATGCTGATATGAAAGAAGGCTTTGTATTCGGCAAAGATGTCTCTCTTCCTGAAACAAGCGTTCATGTTAAAAATCCTCTGACAAATCTAGGAGGCAACCCTCCTTCTCAGAGGCCGATACTTGCTTTCTTTGCTGGGAAAATGCATGGATATGTTCGGCCAATTCTGCTGCAGAATTGGGAAAACAAAGATCCTGACATGAAAATCTTTGGTCGATTGCCTAGGGGGAAAGGCAACAAGAACTATGTGCACCATATGAAGAGCAGCAAGTACTGCATTTGTGCAAGAGGTTATGAAGTGAACAGTCCAAGAGTGGTAGAGGCCATTTTCTATGAGTGTGTTCCGGTGATTATATCAGACAACTTTGTGCCTCCATTTTTCGAAGTTCTGAATTGGGAGTCCTTTGCTGTTTTCATCTCAGAGAAAGATATTCCGAATTTGAAGAATATACTGCTTTCAATCCCAGAGAAGAGATATCTACAGATGCAAATGAGGGTGAAAAGGGTACAGCAGCATTTTCTGTGGCATGTTAAGCCTGAAAAGTATGACATTTTTCATATGATACTCCACTCTATTTGGTACAATAGACTCTATCACATAAAATCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

341

Amino Acids

40.07

Weight (kDa)

9.37

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 10 - 289 1.7e-66 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 4 cut(s) 149, 235, 253, 847
AfaI GTAC 4 cut(s) 383, 683, 918, 992
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 3 cut(s) 271, 853, 870
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 4 cut(s) 15, 133, 201, 320
AluI AGCT 4 cut(s) 15, 133, 201, 320
Alw21I GWGCWC 3 cut(s) 35, 93, 663
Alw26I GTCTC 1 cut(s) 457
Alw44I GTGCAC 1 cut(s) 659
AlwI GGATC 1 cut(s) 596
AoxI GGCC 3 cut(s) 524, 569, 732
ApaLI GTGCAC 1 cut(s) 659
ApeKI GCWGC 4 cut(s) 130, 580, 675, 922
ApoI RAATTY 4 cut(s) 149, 235, 253, 847
AspA2I CCTAGG 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 769, 919
AsuII TTCGAA 1 cut(s) 792
AvaII GGWCC 1 cut(s) 402
AvrII CCTAGG 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 663
BanII GRGCYC 1 cut(s) 364
Bbv12I GWGCWC 3 cut(s) 35, 93, 663
BbvI GCAGC 4 cut(s) 142, 567, 687, 934
BccI CCATC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 2 cut(s) 500, 633
BfmI CTRYAG 2 cut(s) 581, 890
BisI GCNGC 4 cut(s) 131, 581, 676, 923
BlnI CCTAGG 1 cut(s) 632
BlsI GCNGC 4 cut(s) 132, 582, 677, 924
BmcAI AGTACT 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 363, 404
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 367
Bpu14I TTCGAA 1 cut(s) 792
BsaJI CCNNGG 1 cut(s) 632
BsaWI WCCGGW 1 cut(s) 754
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 632
BseGI GGATG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 4 cut(s) 102, 182, 533, 843
BseNI ACTGG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 4 cut(s) 142, 567, 687, 934
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 3 cut(s) 526, 571, 734
BsiHKAI GWGCWC 3 cut(s) 35, 93, 663
BsiSI CCGG 2 cut(s) 86, 755
BslFI GGGAC 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 3 cut(s) 526, 571, 734
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 4 cut(s) 35, 93, 364, 663
Bsp143I GATC 3 cut(s) 139, 331, 601
BspANI GGCC 3 cut(s) 526, 571, 734
BspCNI CTCAG 4 cut(s) 103, 181, 532, 842
BspHI TCATGA 2 cut(s) 123, 352
BspLI GGNNCC 2 cut(s) 363, 404
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 1 cut(s) 596
BspQI GCTCTTC 1 cut(s) 665
BspT104I TTCGAA 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 632
BssMI GATC 3 cut(s) 139, 331, 601
BssNAI GTATAC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 632
Bst1107I GTATAC 1 cut(s) 46
Bst4CI ACNGT 3 cut(s) 56, 195, 716
Bst6I CTCTTC 3 cut(s) 462, 665, 875
BstAPI GCANNNNNTGC 1 cut(s) 684
BstBI TTCGAA 1 cut(s) 792
BstDEI CTNAG 5 cut(s) 111, 168, 390, 519, 829
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 3 cut(s) 142, 334, 604
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 3 cut(s) 139, 331, 601
BstMWI GCNNNNNNNGC 5 cut(s) 326, 542, 577, 684, 943
BstNSI RCATGY 2 cut(s) 388, 941
BstSFI CTRYAG 2 cut(s) 581, 890
BstSLI GKGCMC 1 cut(s) 663
BstV1I GCAGC 4 cut(s) 142, 567, 687, 934
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 46
BsuRI GGCC 3 cut(s) 526, 571, 734
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 61
CciI TCATGA 2 cut(s) 123, 352
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 4 cut(s) 382, 682, 917, 991
CspCI CAANNNNNGTGG 2 cut(s) 968, 1003
CviAII CATG 7 cut(s) 124, 353, 385, 476, 557, 610, 938
CviQI GTAC 4 cut(s) 382, 682, 917, 991
DdeI CTNAG 5 cut(s) 111, 168, 390, 519, 829
DpnI GATC 3 cut(s) 141, 333, 603
DpnII GATC 3 cut(s) 139, 331, 601
DraI TTTAAA 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 3 cut(s) 462, 665, 875
EarI CTCTTC 3 cut(s) 462, 665, 875
Eco130I CCWWGG 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 402
EcoRV GATATC 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 632
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 632
FaeI CATG 7 cut(s) 127, 356, 388, 479, 560, 613, 941
FaqI GGGAC 1 cut(s) 388
FatI CATG 7 cut(s) 123, 352, 384, 475, 556, 609, 937
FauNDI CATATG 2 cut(s) 666, 969
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 131, 581, 676, 923
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 131, 581, 676, 923
FspBI CTAG 2 cut(s) 500, 633
GluI GCNGC 4 cut(s) 131, 581, 676, 923
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 3 cut(s) 526, 571, 734
HapII CCGG 2 cut(s) 86, 755
Hin1II CATG 7 cut(s) 127, 356, 388, 479, 560, 613, 941
HinfI GANTC 2 cut(s) 809, 999
HpaII CCGG 2 cut(s) 86, 755
HphI GGTGA 2 cut(s) 769, 919
Hpy166II GTNNAC 3 cut(s) 46, 661, 712
Hpy188I TCNGA 8 cut(s) 112, 171, 492, 522, 769, 801, 832, 846
Hpy188III TCNNGA 6 cut(s) 124, 310, 353, 461, 605, 1017
Hpy8I GTNNAC 3 cut(s) 46, 661, 712
HpyAV CCTTC 3 cut(s) 53, 422, 525
HpyCH4III ACNGT 3 cut(s) 56, 195, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 542, 577, 684, 943
HpyF3I CTNAG 5 cut(s) 111, 168, 390, 519, 829
Hsp92II CATG 7 cut(s) 127, 356, 388, 479, 560, 613, 941
Kzo9I GATC 3 cut(s) 139, 331, 601
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 4 cut(s) 12, 138, 326, 367
Lsp1109I GCAGC 4 cut(s) 142, 567, 687, 934
LweI GCATC 1 cut(s) 885
MaeI CTAG 2 cut(s) 500, 633
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 141, 333, 603
MboI GATC 3 cut(s) 139, 331, 601
MboII GAAGA 5 cut(s) 283, 449, 682, 865, 892
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 4 cut(s) 35, 93, 364, 663
MluCI AATT 8 cut(s) 149, 221, 235, 253, 573, 586, 802, 847
MlyI GAGTC 2 cut(s) 818, 993
MmeI TCCRAC 1 cut(s) 389
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 5 cut(s) 6, 39, 249, 480, 942
MslI CAYNNNNRTG 2 cut(s) 86, 561
MspI CCGG 2 cut(s) 86, 755
MwoI GCNNNNNNNGC 5 cut(s) 326, 542, 577, 684, 943
NdeI CATATG 2 cut(s) 666, 969
NdeII GATC 3 cut(s) 139, 331, 601
NlaIII CATG 7 cut(s) 127, 356, 388, 479, 560, 613, 941
NlaIV GGNNCC 2 cut(s) 363, 404
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 2 cut(s) 388, 941
NspV TTCGAA 1 cut(s) 792
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 2 cut(s) 123, 352
PciI ACATGT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 665
PkrI GCNGC 4 cut(s) 132, 582, 677, 924
PleI GAGTC 2 cut(s) 817, 993
PpsI GAGTC 2 cut(s) 817, 993
PpuMI RGGWCCY 1 cut(s) 402
PscI ACATGT 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 545
PspN4I GGNNCC 2 cut(s) 363, 404
PspPI GGNCC 1 cut(s) 402
PspPPI RGGWCCY 1 cut(s) 402
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 4 cut(s) 383, 683, 918, 992
RsaNI GTAC 4 cut(s) 382, 682, 917, 991
RseI CAYNNNNRTG 2 cut(s) 86, 561
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 5 cut(s) 6, 39, 249, 480, 942
SatI GCNGC 4 cut(s) 131, 581, 676, 923
Sau3AI GATC 3 cut(s) 139, 331, 601
Sau96I GGNCC 1 cut(s) 402
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 2 cut(s) 818, 993
SduI GDGCHC 4 cut(s) 35, 93, 364, 663
SetI ASST 9 cut(s) 17, 73, 135, 183, 203, 288, 322, 404, 703
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 2 cut(s) 581, 890
SfuI TTCGAA 1 cut(s) 792
SgrAI CRCCGGYG 1 cut(s) 85
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 86, 561
Sse9I AATT 8 cut(s) 149, 221, 235, 253, 573, 586, 802, 847
SspI AATATT 1 cut(s) 302
SspMI CTAG 2 cut(s) 500, 633
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 3 cut(s) 56, 195, 716
TaqI TCGA 3 cut(s) 282, 625, 792
TasI AATT 8 cut(s) 149, 221, 235, 253, 573, 586, 802, 847
TatI WGTACW 2 cut(s) 381, 681
Tru1I TTAA 5 cut(s) 6, 39, 249, 480, 942
Tru9I TTAA 5 cut(s) 6, 39, 249, 480, 942
TscAI CASTG 1 cut(s) 61
TseI GCWGC 4 cut(s) 130, 580, 675, 922
TspRI CASTG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 4 cut(s) 149, 235, 253, 847
XceI RCATGY 2 cut(s) 388, 941
XmaJI CCTAGG 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 500, 633
ZrmI AGTACT 1 cut(s) 683
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.