Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Reverse (-)

7862358 .. 7866028

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGATGGAGCTTTTATCTGTATCTCAAGTCGAACCGAGGAGAGTGATGTGGATTGTGGGAATGATATTTGCTTTGGTTATAGTTGTCCAGCGTCTTGAACTTCCGTACGGTAATCTTTTATCATCTATACTCTCTGCTGCAAAGGTTCCCTTAACTTCACTGTCTACTTCTCAGATGGTCGGTAATGTGTCACTTTTGAATGATCTGAGCTTTGTAGAAAAGAAAAACACTACAGATAATGCATTTTTAGATAGCAAGACTAGGAATGAAGGGGATACTACAGATGAAGTTGTGATCAATTCAACTGCTGGTTTTCTAACTGCGTCACCTGTGTCCCCAACGGTAAATTCATCGCCTAAGGTTGGAGCTCCCACAATAGTTGTTGACTCAAATGTGACTTTGGTCGAGAAAGATGGAACAGCGTCTTCCGAGAAAACCAAAAATTCTGAGCAATTGCACAATGACCTCAAGCAAACACAACATAATTCTTCATTGATCAGAGCCCCTGAAGTGAACAAAGAGCCAGAGGTCCCCGTCTTGGATGTCTATTCGATGTCTGATATGAAGAATCTGTTACTTCAGAGTCGTGCATCGGATCATTCAGTGATACCACAATGGTCTTCGACTGTTGACGAAGAGCTGCAATATGCAGCCTCCCAGATTCAAAATGCACCCATTATTAAGAATGATCCAACTCTGTATGCTCCACTTTATCGGAATCTTTCCATGTTTAAAAGTCATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

250

Amino Acids

27.26

Weight (kDa)

5.12

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	606, 686
AcsI	RAATTY	2 cut(s)	349, 445
AcuI	CTGAAG	2 cut(s)	531, 566
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	365, 541
AgsI	TTSAA	4 cut(s)	101, 202, 306, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	4 cut(s)	13, 213, 371, 643
AluI	AGCT	4 cut(s)	13, 213, 371, 643
Alw21I	GWGCWC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	606, 686
ApeKI	GCWGC	3 cut(s)	140, 643, 653
ApoI	RAATTY	2 cut(s)	349, 445
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	532
AxyI	CCTNAGG	1 cut(s)	360
BanII	GRGCYC	2 cut(s)	373, 508
BbsI	GAAGAC	2 cut(s)	420, 615
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	127, 630, 665
BccI	CCATC	2 cut(s)	172, 410
BciVI	GTATCC	1 cut(s)	271
BclI	TGATCA	2 cut(s)	297, 498
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	234, 282
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	3 cut(s)	141, 644, 654
BlsI	GCNGC	3 cut(s)	142, 645, 655
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	2 cut(s)	150, 534
BmsI	GCATC	1 cut(s)	602
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	2 cut(s)	420, 615
BpuEI	CTTGAG	2 cut(s)	12, 455
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 541
Bse21I	CCTNAGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	12, 550
BseLI	CCNNNNNNNGG	2 cut(s)	365, 541
BseMII	CTCAG	3 cut(s)	188, 200, 441
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	127, 630, 665
BsiHKAI	GWGCWC	1 cut(s)	373
BsiWI	CGTACG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	322, 518
BslI	CCNNNNNNNGG	2 cut(s)	365, 541
BsmFI	GGGAC	2 cut(s)	322, 518
Bsp1286I	GDGCHC	2 cut(s)	373, 508
Bsp143I	GATC	5 cut(s)	205, 297, 498, 598, 691
BspCNI	CTCAG	3 cut(s)	187, 201, 442
BspLI	GGNNCC	2 cut(s)	150, 534
BspPI	GGATC	2 cut(s)	606, 686
BspQI	GCTCTTC	1 cut(s)	633
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	5 cut(s)	205, 297, 498, 598, 691
Bst4CI	ACNGT	4 cut(s)	113, 165, 346, 631
Bst6I	CTCTTC	1 cut(s)	633
BstDEI	CTNAG	4 cut(s)	174, 209, 360, 450
BstF5I	GGATG	2 cut(s)	12, 550
BstKTI	GATC	5 cut(s)	208, 300, 501, 601, 694
BstMBI	GATC	5 cut(s)	205, 297, 498, 598, 691
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSFI	CTRYAG	2 cut(s)	234, 282
BstV1I	GCAGC	3 cut(s)	127, 630, 665
BstV2I	GAAGAC	2 cut(s)	420, 615
Bsu36I	CCTNAGG	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	12, 550
BtsIMutI	CAGTG	2 cut(s)	161, 612
Cfr13I	GGNCC	1 cut(s)	532
CseI	GACGC	3 cut(s)	83, 315, 414
Csp6I	GTAC	1 cut(s)	109
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	1 cut(s)	730
CviJI	RGCY	7 cut(s)	13, 213, 371, 506, 526, 643, 656
CviKI_1	RGCY	7 cut(s)	13, 213, 371, 506, 526, 643, 656
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	4 cut(s)	174, 209, 360, 450
DpnI	GATC	5 cut(s)	207, 299, 500, 600, 693
DpnII	GATC	5 cut(s)	205, 297, 498, 598, 691
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	371
Eco24I	GRGCYC	2 cut(s)	373, 508
Eco47I	GGWCC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	531, 566
Eco81I	CCTNAGG	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	2 cut(s)	373, 508
FaeI	CATG	1 cut(s)	733
FaiI	YATR	8 cut(s)	83, 131, 486, 566, 651, 705, 731, 748
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	2 cut(s)	322, 518
FatI	CATG	1 cut(s)	729
FbaI	TGATCA	2 cut(s)	297, 498
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	141, 644, 654
FokI	GGATG	2 cut(s)	19, 557
FriOI	GRGCYC	2 cut(s)	373, 508
Fsp4HI	GCNGC	3 cut(s)	141, 644, 654
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	3 cut(s)	141, 644, 654
HgaI	GACGC	3 cut(s)	83, 315, 414
Hin1II	CATG	1 cut(s)	733
HincII	GTYRAC	2 cut(s)	388, 634
HindII	GTYRAC	2 cut(s)	388, 634
HinfI	GANTC	5 cut(s)	389, 571, 586, 664, 721
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	4 cut(s)	168, 388, 517, 634
Hpy188I	TCNGA	9 cut(s)	177, 210, 433, 451, 503, 562, 585, 598, 720
Hpy188III	TCNNGA	2 cut(s)	98, 409
Hpy8I	GTNNAC	4 cut(s)	168, 388, 517, 634
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	4 cut(s)	113, 165, 346, 631
HpyCH4V	TGCA	7 cut(s)	143, 245, 460, 593, 646, 653, 674
HpyF3I	CTNAG	4 cut(s)	174, 209, 360, 450
Hsp92II	CATG	1 cut(s)	733
Ksp22I	TGATCA	2 cut(s)	297, 498
Kzo9I	GATC	5 cut(s)	205, 297, 498, 598, 691
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	4 cut(s)	10, 368, 376, 712
LpnPI	CCDG	6 cut(s)	104, 297, 345, 522, 540, 674
Lsp1109I	GCAGC	3 cut(s)	127, 630, 665
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	4 cut(s)	192, 327, 397, 576
MalI	GATC	5 cut(s)	207, 299, 500, 600, 693
MboI	GATC	5 cut(s)	205, 297, 498, 598, 691
MboII	GAAGA	5 cut(s)	420, 483, 580, 615, 650
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	373, 508
MluCI	AATT	5 cut(s)	301, 349, 445, 455, 487
MlyI	GAGTC	2 cut(s)	383, 595
MmeI	TCCRAC	2 cut(s)	346, 719
MnlI	CCTC	4 cut(s)	33, 479, 523, 667
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	3 cut(s)	155, 684, 735
MunI	CAATTG	1 cut(s)	455
NdeII	GATC	5 cut(s)	205, 297, 498, 598, 691
NlaIII	CATG	1 cut(s)	733
NlaIV	GGNNCC	2 cut(s)	150, 534
NmuCI	GTSAC	3 cut(s)	192, 327, 397
NsiI	ATGCAT	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	571, 664, 721
Pfl23II	CGTACG	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	142, 645, 655
PleI	GAGTC	2 cut(s)	383, 594
PpsI	GAGTC	2 cut(s)	383, 594
PpuMI	RGGWCCY	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	532
PspLI	CGTACG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	150, 534
PspPI	GGNCC	1 cut(s)	532
PspPPI	RGGWCCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	155, 684, 735
SatI	GCNGC	3 cut(s)	141, 644, 654
Sau3AI	GATC	5 cut(s)	205, 297, 498, 598, 691
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	2 cut(s)	383, 595
SduI	GDGCHC	2 cut(s)	373, 508
SetI	ASST	9 cut(s)	15, 150, 215, 334, 366, 373, 471, 534, 645
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	2 cut(s)	234, 282
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	27, 470
SmoI	CTYRAG	2 cut(s)	27, 470
Sse9I	AATT	5 cut(s)	301, 349, 445, 455, 487
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	373
TaaI	ACNGT	4 cut(s)	113, 165, 346, 631
TaqI	TCGA	4 cut(s)	33, 408, 554, 626
TasI	AATT	5 cut(s)	301, 349, 445, 455, 487
TfiI	GAWTC	3 cut(s)	571, 664, 721
Tru1I	TTAA	3 cut(s)	155, 684, 735
Tru9I	TTAA	3 cut(s)	155, 684, 735
TscAI	CASTG	2 cut(s)	168, 612
TseFI	GTSAC	3 cut(s)	192, 327, 397
TseI	GCWGC	3 cut(s)	140, 643, 653
Tsp45I	GTSAC	3 cut(s)	192, 327, 397
TspDTI	ATGAA	5 cut(s)	285, 303, 342, 483, 581
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	168, 612
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	2 cut(s)	349, 445
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.