AT4G32790

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003090
Physical Location & Seq
Forward (+)
15811974 .. 15815025
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32790.3

Sequence Viewer

Length: 1782 bp
ATGTTGAATTTGTGGCTACGAGAACATTTAGTATACGTTTGCCACCAGCAGAACCTAGTGGCTAAGTTTAGGAGTCAGAAAGCAATGAAATTGTTAAGATTTGCTGGTCTTGTTTTCATTTTTATCACAACCTTCCAGTTTGTGAACATACGTTATTATGGTGGTGATATATTCTCTTTATCTTCTCAAGATAAGTTTCCAGTATCAATTGATGTAAGCACAGAACCCGTAAGCACGTTGTCCGGTCCTGAAAGATTGAATTCTAGTAGTTCAAGATCCGTTGAGGTAGATGAAGAGGAAAGCACCGGTTTAAAAGAAGACCATGTGATTGGCTTTGATAAGAATGACACAGTTCAAGGCCATGATAGTTTCGTAGAGGATGTCAAAGATAAGGAAACTCTTGATTTGCTTCCAGGAACCAAGAGCAGCTCAAACGAGAGTTACGAGAAAATAGTAGAAGATGCTGATATTGCTTTTGAAAATATTAGGAAAATGGAGATTCTGGAGAGTAAGTCTGATCCTTCTGTTGATAATCTTTCCTCAGAGGTGAAAAAGTTTATGAATGTTTCAAATTCTGGGGTGGTTTCTATCACTGAGATGATGAATTTACTGCATCAAAGCCGCACTTCTCATGTCTCACTGAAAGTAAAACGGTCTTCCACAATTGATCATGAGCTGTTATATGCAAGAACTCAAATTGAGAACCCACCGCTGATAGAGAACGACCCTTTACTGCATACTCCTCTGTATTGGAATCTCTCCATGTTCAAAAGGAGCTATGAGCTAATGGAGAAAAAGCTCAAGGTATATGTCTACAGGGAAGGCAAAAGACCTGTACTGCATAAGCCGGTGCTGAAAGGAATATATGCTTCTGAAGGATGGTTTATGAAACAACTCAAGTCCAGCAGAACATTTGTCACAAAAGACCCTCGTAAAGCTCACCTATTTTATCTTCCTTTCAGCTCCAAAATGTTGGAAGAAACTCTGTATGTCCCAGGTTCTCACAGCGATAAGAATCTCATTCAGTTTTTGAAGAACTACCTGGACATGATTTCTTCCAAATATAGTTTCTGGAATAAAACTGGAGGATCAGATCATTTTCTGGTTGCTTGCCACGACTGGGCTCCTTCCGAGACGAGGCAGTACATGGCCAAGTGCATCAGAGCATTATGCAATTCTGATGTTTCAGAAGGTTTTGTGTTCGGTAAAGATGTAGCTCTTCCTGAGACGACTATTCTTGTTCCTAGGAGACCGCTTAGGGCTCTCGGAGGCAAACCTGTTTCACAAAGGCAAATACTTGCCTTCTTTGCAGGCGGAATGCACGGTTACCTTAGACCTCTCCTATTGCAAAACTGGGGAGGAAACAGAGATCCAGACATGAAAATATTCAGTGAGATACCCAAATCTAAAGGGAAAAAGAGTTACATGGAGTACATGAAGAGCAGCAAGTATTGCATCTGCCCAAAAGGGCACGAAGTCAATAGCCCTCGGGTCGTGGAGGCATTGTTCTATGAGTGTGTCCCGGTTATCATATCCGATAACTTTGTACCTCCCTTCTTCGAAGTTCTGAATTGGGAGTCTTTTGCGGTATTTGTCTTGGAGAAAGATATTCCTGATTTGAAGAACATATTAGTGTCCATAACTGAGGAAAGGTATAGAGAGATGCAGATGAGAGTCAAGATGGTGCAGAAGCATTTCCTTTGGCATTCTAAACCTGAGAGATTCGATATATTTCATATGATACTTCACTCCATTTGGTACAATAGAGTTTTTCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

593

Amino Acids

68.63

Weight (kDa)

8.53

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 263 - 546 5.3e-78 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 33, 813
AciI CCGC 5 cut(s) 622, 710, 1253, 1314, 1586
AclWI GGATC 4 cut(s) 270, 512, 1096, 1364
AcoI YGGCCR 1 cut(s) 1149
AcsI RAATTY 5 cut(s) 7, 259, 571, 604, 1776
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 5 cut(s) 837, 1145, 1433, 1548, 1760
AfiI CCNNNNNNNGG 2 cut(s) 1120, 1137
AgeI ACCGGT 1 cut(s) 305
AjnI CCWGG 3 cut(s) 412, 994, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AloI GAACNNNNNNTCC 2 cut(s) 1490, 1522
AluBI AGCT 8 cut(s) 429, 676, 777, 784, 799, 938, 963, 1217
AluI AGCT 8 cut(s) 429, 676, 777, 784, 799, 938, 963, 1217
Alw26I GTCTC 4 cut(s) 640, 1127, 1220, 1243
AlwI GGATC 4 cut(s) 270, 512, 1096, 1364
Ama87I CYCGRG 1 cut(s) 1488
AoxI GGCC 2 cut(s) 358, 1149
ApeKI GCWGC 2 cut(s) 426, 1443
ApoI RAATTY 5 cut(s) 7, 259, 571, 604, 1776
AsiGI ACCGGT 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 1385, 1694
AspA2I CCTAGG 1 cut(s) 1244
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 1523
AsuHPI GGTGA 3 cut(s) 176, 559, 932
AsuII TTCGAA 1 cut(s) 1560
AvaI CYCGRG 1 cut(s) 1488
AvaII GGWCC 1 cut(s) 245
AvrII CCTAGG 1 cut(s) 1244
BaeGI GKGCMC 1 cut(s) 1473
BalI TGGCCA 1 cut(s) 1151
BanII GRGCYC 2 cut(s) 1126, 1264
BbsI GAAGAC 2 cut(s) 324, 648
BbvI GCAGC 2 cut(s) 438, 1455
BccI CCATC 2 cut(s) 873, 1675
BciT130I CCWGG 3 cut(s) 414, 996, 1043
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 1523
BcoDI GTCTC 4 cut(s) 640, 1127, 1220, 1243
BfaI CTAG 3 cut(s) 56, 264, 1245
BfmI CTRYAG 1 cut(s) 814
BisI GCNGC 3 cut(s) 427, 622, 1444
BlnI CCTAGG 1 cut(s) 1244
BlsI GCNGC 3 cut(s) 428, 623, 1445
Bme1390I CCNGG 4 cut(s) 414, 996, 1043, 1523
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 1488
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 418, 1125
BmrFI CCNGG 4 cut(s) 414, 996, 1043, 1523
BmrI ACTGGG 2 cut(s) 1129, 1363
BmsI GCATC 5 cut(s) 451, 622, 1167, 1464, 1653
BmuI ACTGGG 2 cut(s) 1129, 1363
BpiI GAAGAC 2 cut(s) 324, 648
BpmI CTGGAG 2 cut(s) 524, 1104
Bpu10I CCTNAGC 1 cut(s) 1256
Bpu14I TTCGAA 1 cut(s) 1560
BpuEI CTTGAG 3 cut(s) 171, 785, 881
BpuMI CCSGG 1 cut(s) 1523
BsaBI GATNNNNATC 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 1243
BsaJI CCNNGG 3 cut(s) 994, 1244, 1487
BsaWI WCCGGW 2 cut(s) 242, 305
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 1490, 1520
Bsc4I CCNNNNNNNGG 2 cut(s) 1120, 1137
Bse118I RCCGGY 2 cut(s) 305, 847
Bse1I ACTGG 5 cut(s) 136, 200, 1087, 1124, 1358
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 1014
BseBI CCWGG 3 cut(s) 414, 996, 1043
BseDI CCNNGG 3 cut(s) 994, 1244, 1487
BseGI GGATG 2 cut(s) 385, 884
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 2 cut(s) 1120, 1137
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 5 cut(s) 555, 585, 1215, 1635, 1707
BseNI ACTGG 5 cut(s) 136, 200, 1087, 1124, 1358
BseRI GAGGAG 1 cut(s) 732
BseSI GKGCMC 1 cut(s) 1473
BseXI GCAGC 2 cut(s) 438, 1455
BsgI GTGCAG 1 cut(s) 1706
BshFI GGCC 2 cut(s) 360, 1151
BshTI ACCGGT 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 1488
BsiSI CCGG 4 cut(s) 243, 306, 848, 1523
BslFI GGGAC 2 cut(s) 977, 1505
BslI CCNNNNNNNGG 2 cut(s) 1120, 1137
BsmAI GTCTC 4 cut(s) 640, 1127, 1220, 1243
BsmBI CGTCTC 2 cut(s) 1127, 1220
BsmFI GGGAC 2 cut(s) 977, 1505
BsmI GAATGC 2 cut(s) 1323, 1705
BsnI GGCC 2 cut(s) 360, 1151
Bso31I GGTCTC 1 cut(s) 1243
BsoBI CYCGRG 1 cut(s) 1488
Bsp119I TTCGAA 1 cut(s) 1560
Bsp1286I GDGCHC 3 cut(s) 1126, 1264, 1473
Bsp143I GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
BspACI CCGC 5 cut(s) 622, 710, 1253, 1314, 1586
BspANI GGCC 2 cut(s) 360, 1151
BspCNI CTCAG 5 cut(s) 554, 586, 1216, 1636, 1708
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 418, 1125
BspPI GGATC 4 cut(s) 270, 512, 1096, 1364
BspQI GCTCTTC 2 cut(s) 1224, 1433
BspT104I TTCGAA 1 cut(s) 1560
BspTNI GGTCTC 1 cut(s) 1243
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 2 cut(s) 305, 847
BsrI ACTGG 5 cut(s) 136, 200, 1087, 1124, 1358
BssAI RCCGGY 2 cut(s) 305, 847
BssECI CCNNGG 3 cut(s) 994, 1244, 1487
BssMI GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
BssNAI GTATAC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 1244
Bst1107I GTATAC 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 414, 996, 1043
Bst4CI ACNGT 3 cut(s) 352, 654, 1325
Bst6I CTCTTC 3 cut(s) 288, 1224, 1433
BstAPI GCANNNNNTGC 1 cut(s) 1452
BstBI TTCGAA 1 cut(s) 1560
BstC8I GCNNGC 2 cut(s) 1111, 1312
BstDEI CTNAG 8 cut(s) 63, 541, 594, 1224, 1256, 1331, 1644, 1716
BstEII GGTNACC 1 cut(s) 1325
BstF5I GGATG 2 cut(s) 385, 884
BstKTI GATC 6 cut(s) 278, 520, 670, 1091, 1096, 1372
BstMAI GTCTC 4 cut(s) 640, 1127, 1220, 1243
BstMBI GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 470, 1307, 1452
BstNI CCWGG 3 cut(s) 414, 996, 1043
BstPI GGTNACC 1 cut(s) 1325
BstSCI CCNGG 4 cut(s) 412, 994, 1041, 1521
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 1473
BstV1I GCAGC 2 cut(s) 438, 1455
BstV2I GAAGAC 2 cut(s) 324, 648
BstX2I RGATCY 2 cut(s) 275, 1369
BstXI CCANNNNNNTGG 2 cut(s) 329, 973
BstYI RGATCY 2 cut(s) 275, 1369
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 360, 1151
BtsCI GGATG 2 cut(s) 385, 884
BtsIMutI CAGTG 3 cut(s) 591, 638, 1396
Cac8I GCNNGC 2 cut(s) 1111, 1312
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 2 cut(s) 305, 847
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 5 cut(s) 836, 1144, 1432, 1547, 1759
CspAI ACCGGT 1 cut(s) 305
CviQI GTAC 5 cut(s) 836, 1144, 1432, 1547, 1759
DdeI CTNAG 8 cut(s) 63, 541, 594, 1224, 1256, 1331, 1644, 1716
DpnI GATC 6 cut(s) 277, 519, 669, 1090, 1095, 1371
DpnII GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
DraI TTTAAA 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 1149
Eam1104I CTCTTC 3 cut(s) 288, 1224, 1433
EarI CTCTTC 3 cut(s) 288, 1224, 1433
EciI GGCGGA 1 cut(s) 1329
Eco130I CCWWGG 1 cut(s) 1244
Eco24I GRGCYC 2 cut(s) 1126, 1264
Eco31I GGTCTC 1 cut(s) 1243
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 1488
Eco91I GGTNACC 1 cut(s) 1325
EcoO65I GGTNACC 1 cut(s) 1325
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 412, 994, 1041
EcoT14I CCWWGG 1 cut(s) 1244
EcoT38I GRGCYC 2 cut(s) 1126, 1264
ErhI CCWWGG 1 cut(s) 1244
Esp3I CGTCTC 2 cut(s) 1127, 1220
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FaqI GGGAC 2 cut(s) 977, 1505
FauNDI CATATG 1 cut(s) 1737
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 2 cut(s) 33, 813
Fnu4HI GCNGC 3 cut(s) 427, 622, 1444
FokI GGATG 2 cut(s) 392, 891
FriOI GRGCYC 2 cut(s) 1126, 1264
Fsp4HI GCNGC 3 cut(s) 427, 622, 1444
FspBI CTAG 3 cut(s) 56, 264, 1245
GluI GCNGC 3 cut(s) 427, 622, 1444
GsuI CTGGAG 2 cut(s) 524, 1104
HaeIII GGCC 2 cut(s) 360, 1151
HapII CCGG 4 cut(s) 243, 306, 848, 1523
HinfI GANTC 7 cut(s) 73, 499, 754, 1015, 1577, 1674, 1722
HpaII CCGG 4 cut(s) 243, 306, 848, 1523
HphI GGTGA 3 cut(s) 176, 559, 932
Hpy166II GTNNAC 3 cut(s) 34, 145, 814
Hpy8I GTNNAC 3 cut(s) 34, 145, 814
HpyAV CCTTC 8 cut(s) 142, 531, 815, 869, 1137, 1184, 1312, 1564
HpyCH4III ACNGT 3 cut(s) 352, 654, 1325
HpyCH4IV ACGT 3 cut(s) 36, 151, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 1307, 1452
HpyF3I CTNAG 8 cut(s) 63, 541, 594, 1224, 1256, 1331, 1644, 1716
HpySE526I ACGT 3 cut(s) 36, 151, 236
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
LguI GCTCTTC 2 cut(s) 1224, 1433
LmnI GCTCC 3 cut(s) 774, 968, 1129
Lsp1109I GCAGC 2 cut(s) 438, 1455
LweI GCATC 5 cut(s) 451, 622, 1167, 1464, 1653
MaeI CTAG 3 cut(s) 56, 264, 1245
MaeII ACGT 3 cut(s) 36, 151, 236
MaeIII GTNAC 4 cut(s) 440, 916, 1325, 1421
MalI GATC 6 cut(s) 277, 519, 669, 1090, 1095, 1371
MboI GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
MfeI CAATTG 2 cut(s) 207, 663
MflI RGATCY 2 cut(s) 275, 1369
MhlI GDGCHC 3 cut(s) 1126, 1264, 1473
MlsI TGGCCA 1 cut(s) 1151
MluNI TGGCCA 1 cut(s) 1151
MlyI GAGTC 3 cut(s) 82, 1586, 1683
MmeI TCCRAC 1 cut(s) 954
Mox20I TGGCCA 1 cut(s) 1151
MroXI GAANNNNTTC 2 cut(s) 1385, 1694
MscI TGGCCA 1 cut(s) 1151
MseI TTAA 3 cut(s) 95, 311, 1780
MslI CAYNNNNRTG 2 cut(s) 596, 1631
Msp20I TGGCCA 1 cut(s) 1151
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 4 cut(s) 243, 306, 848, 1523
MspR9I CCNGG 4 cut(s) 414, 996, 1043, 1523
MunI CAATTG 2 cut(s) 207, 663
Mva1269I GAATGC 2 cut(s) 1323, 1705
MvaI CCWGG 3 cut(s) 414, 996, 1043
MwoI GCNNNNNNNGC 3 cut(s) 470, 1307, 1452
NciI CCSGG 1 cut(s) 1523
NdeI CATATG 1 cut(s) 1737
NdeII GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
NlaIV GGNNCC 2 cut(s) 418, 1125
NmuCI GTSAC 1 cut(s) 916
NspV TTCGAA 1 cut(s) 1560
PagI TCATGA 1 cut(s) 670
PciSI GCTCTTC 2 cut(s) 1224, 1433
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 2 cut(s) 1323, 1705
PdmI GAANNNNTTC 2 cut(s) 1385, 1694
PfeI GAWTC 4 cut(s) 499, 754, 1015, 1722
PfoI TCCNGGA 1 cut(s) 412
PinAI ACCGGT 1 cut(s) 305
PkrI GCNGC 3 cut(s) 428, 623, 1445
PleI GAGTC 3 cut(s) 81, 1585, 1682
PpsI GAGTC 3 cut(s) 81, 1585, 1682
Psp6I CCWGG 3 cut(s) 412, 994, 1041
PspEI GGTNACC 1 cut(s) 1325
PspGI CCWGG 3 cut(s) 412, 994, 1041
PspN4I GGNNCC 2 cut(s) 418, 1125
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 275, 1369
RsaI GTAC 5 cut(s) 837, 1145, 1433, 1548, 1760
RsaNI GTAC 5 cut(s) 836, 1144, 1432, 1547, 1759
RseI CAYNNNNRTG 2 cut(s) 596, 1631
SapI GCTCTTC 2 cut(s) 1224, 1433
SaqAI TTAA 3 cut(s) 95, 311, 1780
SatI GCNGC 3 cut(s) 427, 622, 1444
Sau3AI GATC 6 cut(s) 275, 517, 667, 1088, 1093, 1369
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 3 cut(s) 82, 1586, 1683
ScrFI CCNGG 4 cut(s) 414, 996, 1043, 1523
SduI GDGCHC 3 cut(s) 1126, 1264, 1473
SfaNI GCATC 5 cut(s) 451, 622, 1167, 1464, 1653
SfcI CTRYAG 1 cut(s) 814
SfuI TTCGAA 1 cut(s) 1560
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 596, 1631
SmlI CTYRAG 3 cut(s) 186, 800, 896
SmoI CTYRAG 3 cut(s) 186, 800, 896
SsiI CCGC 5 cut(s) 622, 710, 1253, 1314, 1586
SspI AATATT 2 cut(s) 484, 1386
SspMI CTAG 3 cut(s) 56, 264, 1245
StyD4I CCNGG 4 cut(s) 412, 994, 1041, 1521
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 3 cut(s) 352, 654, 1325
TaiI ACGT 3 cut(s) 39, 154, 239
TaqI TCGA 2 cut(s) 1560, 1725
TatI WGTACW 3 cut(s) 835, 1143, 1431
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 4 cut(s) 499, 754, 1015, 1722
Tru1I TTAA 3 cut(s) 95, 311, 1780
Tru9I TTAA 3 cut(s) 95, 311, 1780
TscAI CASTG 3 cut(s) 598, 645, 1396
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 2 cut(s) 426, 1443
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 9 cut(s) 101, 106, 306, 575, 617, 902, 1394, 1451, 1724
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 3 cut(s) 598, 645, 1396
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 5 cut(s) 7, 259, 571, 604, 1776
XmaJI CCTAGG 1 cut(s) 1244
XmiI GTMKAC 2 cut(s) 33, 813
XmnI GAANNNNTTC 2 cut(s) 1385, 1694
XspI CTAG 3 cut(s) 56, 264, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.