Rh6AG459900

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003090
Physical Location & Seq
Forward (+)
64276345 .. 64278021
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG459900.1

Sequence Viewer

Length: 789 bp
ATGCCCAGTGACTTTGTTGTAGATGTTGGATATGCAATTTTATTTACAGGCAGCATTCAAATCCAAACTTCAGTTCATATTCTAACACATCATATCCATATGCTTTCTAACAATGAACTGCTACTGCCTCAGGCCCCGTCAGAAACCAAGAAATACATGGCTAAGTGCATTAGAGCCCTCTGCAATGCTGATATGAAAGAAGGTTTTGTATTTGGCAAGGACGCATCTCTTCCAGAAACGTATGTCCAGAATTCCAAGAATCCTCTCAGAGATCTTGGAGGCAACCGTCCTTCCAAGAGGTCCATACTTGCTTTTTTTGCTGGTAGCATGCATGGTTATGTACGGCCGATTCTGTTGCAGCATTGGGAAAACAAAGATCCCGACATGAAAATCTTTGGTCGGTTGCCGAAGAGCAAAGGCAACAAGATCTACGTGCGTCATATGAAGAGCAGCAAGTACTGCATTTGCGCAAAGGGTTACGAAGTGAACAGTCCTAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCGGTGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTGAAATGGGAGTCGTTTGCTGTTTTCGTGTTGGAGAAAGATATTCCAAATTTGAAGGATATACTGCTTTCAATCCCAAAGAAGAGATATCTGCAGATGCAAATGAGAGTAAAAAGGGTACAACAGCATTTTCTGTGGCATGCTAGGCCTGAGAAGTATGACATTTTTCATATGATACTCCACTCTATTTGGTACAATAGACTCCATCGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

262

Amino Acids

30.55

Weight (kDa)

9.51

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 49 - 214 2.8e-38 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 469
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 2 cut(s) 250, 622
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 4 cut(s) 342, 458, 693, 767
AgsI TTSAA 3 cut(s) 59, 628, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AlwI GGATC 1 cut(s) 371
AoxI GGCC 4 cut(s) 132, 344, 507, 719
ApeKI GCWGC 3 cut(s) 51, 358, 450
ApoI RAATTY 2 cut(s) 250, 622
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 133, 300
AsuHPI GGTGA 1 cut(s) 544
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 300
AxyI CCTNAGG 1 cut(s) 129
BanII GRGCYC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 63, 370, 462
BccI CCATC 1 cut(s) 786
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BfaI CTAG 2 cut(s) 495, 717
BfmI CTRYAG 1 cut(s) 665
BglII AGATCT 2 cut(s) 271, 426
BisI GCNGC 3 cut(s) 52, 359, 451
BlsI GCNGC 3 cut(s) 53, 360, 452
BmcAI AGTACT 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 133, 300
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 2 cut(s) 233, 660
Bpu14I TTCGAA 1 cut(s) 567
BsaAI YACGTR 1 cut(s) 433
BsaWI WCCGGW 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 6
Bse21I CCTNAGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 143, 280, 714
BseNI ACTGG 1 cut(s) 6
BseX3I CGGCCG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 63, 370, 462
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 4 cut(s) 134, 346, 509, 721
BsiEI CGRYCG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 530
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 4 cut(s) 134, 346, 509, 721
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 271, 376, 426
BspANI GGCC 4 cut(s) 134, 346, 509, 721
BspCNI CTCAG 3 cut(s) 142, 279, 715
BspLI GGNNCC 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 669
BspPI GGATC 1 cut(s) 371
BspQI GCTCTTC 2 cut(s) 404, 440
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 6
BssMI GATC 3 cut(s) 271, 376, 426
Bst4CI ACNGT 2 cut(s) 287, 491
Bst6I CTCTTC 4 cut(s) 234, 404, 440, 650
BstAPI GCANNNNNTGC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 433
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 329, 714
BstDEI CTNAG 4 cut(s) 129, 162, 266, 723
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 3 cut(s) 274, 379, 429
BstMBI GATC 3 cut(s) 271, 376, 426
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 3 cut(s) 317, 459, 718
BstNSI RCATGY 2 cut(s) 331, 716
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 63, 370, 462
BstX2I RGATCY 3 cut(s) 271, 376, 426
BstYI RGATCY 3 cut(s) 271, 376, 426
BstZI CGGCCG 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 4 cut(s) 134, 346, 509, 721
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 329, 714
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 133, 300
CseI GACGC 2 cut(s) 230, 425
Csp6I GTAC 4 cut(s) 341, 457, 692, 766
CspCI CAANNNNNGTGG 2 cut(s) 743, 778
CviAII CATG 5 cut(s) 157, 328, 332, 385, 713
CviJI RGCY 6 cut(s) 134, 161, 176, 346, 509, 721
CviKI_1 RGCY 6 cut(s) 134, 161, 176, 346, 509, 721
CviQI GTAC 4 cut(s) 341, 457, 692, 766
DdeI CTNAG 4 cut(s) 129, 162, 266, 723
DpnI GATC 3 cut(s) 273, 378, 428
DpnII GATC 3 cut(s) 271, 376, 426
EaeI YGGCCR 1 cut(s) 344
EagI CGGCCG 1 cut(s) 344
Eam1104I CTCTTC 4 cut(s) 234, 404, 440, 650
EarI CTCTTC 4 cut(s) 234, 404, 440, 650
EclXI CGGCCG 1 cut(s) 344
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 300
Eco52I CGGCCG 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 54
Eco81I CCTNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 662
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 5 cut(s) 160, 331, 335, 388, 716
FatI CATG 5 cut(s) 156, 327, 331, 384, 712
FauNDI CATATG 3 cut(s) 99, 441, 744
Fnu4HI GCNGC 3 cut(s) 52, 359, 451
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 52, 359, 451
FspBI CTAG 2 cut(s) 495, 717
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 1 cut(s) 469
GluI GCNGC 3 cut(s) 52, 359, 451
HaeIII GGCC 4 cut(s) 134, 346, 509, 721
HapII CCGG 1 cut(s) 530
HgaI GACGC 2 cut(s) 230, 425
HhaI GCGC 1 cut(s) 470
Hin1II CATG 5 cut(s) 160, 331, 335, 388, 716
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 4 cut(s) 259, 349, 584, 774
HpaII CCGG 1 cut(s) 530
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 142, 269, 544, 576, 783
Hpy188III TCNNGA 3 cut(s) 233, 247, 380
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 3 cut(s) 194, 300, 622
HpyCH4III ACNGT 2 cut(s) 287, 491
HpyCH4IV ACGT 2 cut(s) 239, 432
HpyCH4V TGCA 8 cut(s) 35, 168, 183, 331, 358, 462, 667, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 459, 718
HpyF3I CTNAG 4 cut(s) 129, 162, 266, 723
HpySE526I ACGT 2 cut(s) 239, 432
Hsp92II CATG 5 cut(s) 160, 331, 335, 388, 716
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 3 cut(s) 271, 376, 426
LguI GCTCTTC 2 cut(s) 404, 440
LpnPI CCDG 8 cut(s) 19, 33, 116, 246, 260, 306, 543, 735
Lsp1109I GCAGC 3 cut(s) 63, 370, 462
LweI GCATC 2 cut(s) 233, 660
MaeI CTAG 2 cut(s) 495, 717
MaeII ACGT 2 cut(s) 239, 432
MaeIII GTNAC 2 cut(s) 8, 476
MalI GATC 3 cut(s) 273, 378, 428
MboI GATC 3 cut(s) 271, 376, 426
MboII GAAGA 4 cut(s) 221, 421, 457, 667
MflI RGATCY 3 cut(s) 271, 376, 426
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 36, 250, 547, 622
MlyI GAGTC 2 cut(s) 593, 768
MmeI TCCRAC 2 cut(s) 7, 585
MnlI CCTC 7 cut(s) 138, 188, 272, 273, 291, 499, 567
Mph1103I ATGCAT 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 1 cut(s) 530
Mva1269I GAATGC 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 317, 459, 718
NdeI CATATG 3 cut(s) 99, 441, 744
NdeII GATC 3 cut(s) 271, 376, 426
NlaIII CATG 5 cut(s) 160, 331, 335, 388, 716
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 8
NsbI TGCGCA 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 2 cut(s) 331, 716
NspV TTCGAA 1 cut(s) 567
PaeI GCATGC 2 cut(s) 331, 716
PceI AGGCCT 1 cut(s) 721
PciSI GCTCTTC 2 cut(s) 404, 440
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 259, 349
PkrI GCNGC 3 cut(s) 53, 360, 452
PleI GAGTC 2 cut(s) 592, 768
PpsI GAGTC 2 cut(s) 592, 768
Ppu21I YACGTR 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 300
PstI CTGCAG 1 cut(s) 669
PsuI RGATCY 3 cut(s) 271, 376, 426
RsaI GTAC 4 cut(s) 342, 458, 693, 767
RsaNI GTAC 4 cut(s) 341, 457, 692, 766
RseI CAYNNNNRTG 1 cut(s) 336
SapI GCTCTTC 2 cut(s) 404, 440
SatI GCNGC 3 cut(s) 52, 359, 451
Sau3AI GATC 3 cut(s) 271, 376, 426
Sau96I GGNCC 2 cut(s) 133, 300
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 2 cut(s) 593, 768
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 205, 242, 302, 435
SfaNI GCATC 2 cut(s) 233, 660
SfcI CTRYAG 1 cut(s) 665
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 336
SphI GCATGC 2 cut(s) 331, 716
Sse9I AATT 4 cut(s) 36, 250, 547, 622
SseBI AGGCCT 1 cut(s) 721
SspMI CTAG 2 cut(s) 495, 717
StuI AGGCCT 1 cut(s) 721
TaaI ACNGT 2 cut(s) 287, 491
TaiI ACGT 2 cut(s) 242, 435
TaqI TCGA 1 cut(s) 567
TasI AATT 4 cut(s) 36, 250, 547, 622
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 2 cut(s) 259, 349
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 3 cut(s) 51, 358, 450
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 6 cut(s) 65, 129, 209, 401, 458, 731
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 2 cut(s) 250, 622
XceI RCATGY 2 cut(s) 331, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 495, 717
ZrmI AGTACT 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.