Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003090

Physical Location & Seq

Genomic Coordinates Forward (+)

63907602 .. 63909095

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAACAAGCTTTTGCATCATAGTCGGACCTCGTACCATTCAGTGAGAATGATCGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAAAAGGAGCTATGAATTAATGGAGAGCACTCTTAAAGAATACATATACAGTGAAGGAGAAAGACCTATAATGCACACACCAGTACTCAAAGGCATATATGCTTCTGAGGGATTGTTCACGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAATAAAGACCCTCAGAAAGCGCACCTCTATTACTTACCTTTTAGCTCTCTAATGTTAGAGGAAAAACTATATGTGCCAAATTCACATAGTTATAAGAATTTTGTAGAGTATTTGAAGAACTACATCAACCTGATTGTGGGGAAATATTCTTTCTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCTTGCCATGACTGGGCTCCAACAGAAACAAAGAAATATATGTCTAAGTGCATTAGGTCCCTTTGCAATGCGGATATGAAAGAAGGCTTTGTATTAGGCAAGGATGTGTCTTTTCATGAAACAAACGTTCATGTCAAAAATCCTCTAAGAAATCTAGGCGGCAACCGTCCTTCTGAGAGGTCGATACTTGCTTTCTTTGCTGGAAAGATGCATGGTTATGTTCGGCCGATTCTGCTGCAGCATTGGGAAAACAAAGATCCCGACATGAAAAACTATGTGCACCATATAAAAAGCAGCAAGTACTGCATTTGTGCAAAAGGTTATGAAGTCAACAGTCCAAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCAGTGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTCAATTGGGAGTCGTTTGCTGTTTTCGTCTTGGAGAAAGATATTCCGAATTTGAAGAAGATATCGCTTGCAATCCCAGAGAAGAGATATCTACAGATGCAAACGAGGGTGAAAAGGTATGACATTTTTCATATGATACTCCACTCTATTTGGTACAGTAGACTCTATCAGATAAAATCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

347

Amino Acids

40.92

Weight (kDa)

9.29

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	44 - 307	1.3e-54	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32790 AT4G32790 AT4G32790 AT5G11610 AT5G11610 AT5G11610 AT5G25820
fragaria_vesca	FvH4_2g35640 FvH4_2g35640 FvH4_2g35651 FvH4_2g35652
malus_domestica	MD08G1114500.v1.1 MD08G1114600.v1.1 MD15G1094000.v1.1
prunus_persica	Prupe.1G448900_v2.0.a1
pyrus_communis	pycom08g09530 pycom08g09540 pycom08g09560 pycom15g08690
rosa_chinensis	RchiOBHm_Chr6g0306161 RchiOBHm_Chr6g0306171
rosa_laevigata	RLG00000010818 RLG00000010819
rosa_multiflora	Rmu_sc0003594.1_g000012
rosa_roxburghii	Rroxscaffold_7G00161990 Rroxscaffold_7G00162000
rosa_rugosa	Rorug06G0347600 Rorug06G0347700
rosa_samantha	Rh6AG459800 Rh6AG459900 Rh6AG460000 Rh6AG460100 Rh6BG441200 Rh6CG474200 Rh6DG460500
rosa_wichuraiana	Rw6G040070 Rw6G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	1018
AciI	CCGC	2 cut(s)	512, 600
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	2 cut(s)	50, 692
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	4 cut(s)	242, 331, 349, 907
AfaI	GTAC	4 cut(s)	35, 183, 743, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	388, 454
AgsI	TTSAA	2 cut(s)	367, 913
AluBI	AGCT	5 cut(s)	10, 108, 226, 297, 1041
AluI	AGCT	5 cut(s)	10, 108, 226, 297, 1041
Alw21I	GWGCWC	2 cut(s)	128, 723
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	2 cut(s)	50, 692
AoxI	GGCC	2 cut(s)	665, 792
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	4 cut(s)	223, 676, 679, 735
ApoI	RAATTY	4 cut(s)	242, 331, 349, 907
AseI	ATTAAT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	27, 498
AsuHPI	GGTGA	1 cut(s)	979
AsuII	TTCGAA	1 cut(s)	852
AvaII	GGWCC	2 cut(s)	27, 498
BaeGI	GKGCMC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	128, 723
BbvI	GCAGC	4 cut(s)	235, 663, 691, 747
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 658, 692
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	2 cut(s)	677, 950
BisI	GCNGC	5 cut(s)	224, 601, 677, 680, 736
BlsI	GCNGC	5 cut(s)	225, 602, 678, 681, 737
BmcAI	AGTACT	2 cut(s)	183, 743
Bme18I	GGWCC	2 cut(s)	27, 498
BmgT120I	GGNCC	2 cut(s)	27, 498
BmiI	GGNNCC	2 cut(s)	459, 500
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	3 cut(s)	25, 639, 945
BmuI	ACTGGG	1 cut(s)	463
Bpu14I	TTCGAA	1 cut(s)	852
Bsa29I	ATCGAT	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 454
Bse1I	ACTGG	4 cut(s)	179, 421, 458, 815
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	54
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	388, 454
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	195, 278, 606
BseNI	ACTGG	4 cut(s)	179, 421, 458, 815
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	723
BseX3I	CGGCCG	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	235, 663, 691, 747
Bsh1285I	CGRYCG	1 cut(s)	668
BshFI	GGCC	2 cut(s)	667, 794
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	668
BsiHKAI	GWGCWC	2 cut(s)	128, 723
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	388, 454
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	667, 794
Bsp119I	TTCGAA	1 cut(s)	852
Bsp1286I	GDGCHC	3 cut(s)	128, 460, 723
Bsp143I	GATC	5 cut(s)	51, 55, 232, 427, 697
BspACI	CCGC	2 cut(s)	512, 600
BspANI	GGCC	2 cut(s)	667, 794
BspCNI	CTCAG	3 cut(s)	196, 277, 607
BspDI	ATCGAT	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	459, 500
BspMAI	CTGCAG	1 cut(s)	681
BspPI	GGATC	2 cut(s)	50, 692
BspT104I	TTCGAA	1 cut(s)	852
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	4 cut(s)	179, 421, 458, 815
BssMI	GATC	5 cut(s)	51, 55, 232, 427, 697
Bst4CI	ACNGT	4 cut(s)	149, 608, 776, 1016
Bst6I	CTCTTC	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	744
BstBI	TTCGAA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	445, 927
BstDEI	CTNAG	5 cut(s)	204, 264, 486, 587, 615
BstF5I	GGATG	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	5 cut(s)	54, 58, 235, 430, 700
BstMBI	GATC	5 cut(s)	51, 55, 232, 427, 697
BstMCI	CGRYCG	1 cut(s)	668
BstMWI	GCNNNNNNNGC	3 cut(s)	638, 673, 744
BstSFI	CTRYAG	2 cut(s)	677, 950
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	4 cut(s)	235, 663, 691, 747
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BstZI	CGGCCG	1 cut(s)	665
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	667, 794
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	3 cut(s)	48, 154, 822
Cac8I	GCNNGC	2 cut(s)	445, 927
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	27, 498
ClaI	ATCGAT	1 cut(s)	54
Csp6I	GTAC	4 cut(s)	34, 182, 742, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	989, 1024
CviAII	CATG	6 cut(s)	94, 449, 557, 572, 653, 706
CviJI	RGCY	9 cut(s)	10, 108, 226, 297, 458, 528, 667, 794, 1041
CviKI_1	RGCY	9 cut(s)	10, 108, 226, 297, 458, 528, 667, 794, 1041
CviQI	GTAC	4 cut(s)	34, 182, 742, 1012
DdeI	CTNAG	5 cut(s)	204, 264, 486, 587, 615
DpnI	GATC	5 cut(s)	53, 57, 234, 429, 699
DpnII	GATC	5 cut(s)	51, 55, 232, 427, 697
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	665
EagI	CGGCCG	1 cut(s)	665
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
EclXI	CGGCCG	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	460
Eco32I	GATATC	2 cut(s)	921, 947
Eco47I	GGWCC	2 cut(s)	27, 498
Eco52I	CGGCCG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRV	GATATC	2 cut(s)	921, 947
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	460
FaeI	CATG	6 cut(s)	97, 452, 560, 575, 656, 709
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	6 cut(s)	93, 448, 556, 571, 652, 705
FauNDI	CATATG	1 cut(s)	990
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	224, 601, 677, 680, 736
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	5 cut(s)	224, 601, 677, 680, 736
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	5 cut(s)	224, 601, 677, 680, 736
HaeIII	GGCC	2 cut(s)	667, 794
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	6 cut(s)	97, 452, 560, 575, 656, 709
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	4 cut(s)	85, 670, 869, 1020
HphI	GGTGA	1 cut(s)	979
Hpy166II	GTNNAC	4 cut(s)	216, 721, 772, 1019
Hpy188I	TCNGA	8 cut(s)	27, 84, 205, 267, 616, 829, 906, 1029
Hpy188III	TCNNGA	4 cut(s)	217, 406, 557, 701
Hpy8I	GTNNAC	4 cut(s)	216, 721, 772, 1019
HpyAV	CCTTC	3 cut(s)	146, 518, 621
HpyCH4III	ACNGT	4 cut(s)	149, 608, 776, 1016
HpyCH4IV	ACGT	1 cut(s)	567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	638, 673, 744
HpyF3I	CTNAG	5 cut(s)	204, 264, 486, 587, 615
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	6 cut(s)	97, 452, 560, 575, 656, 709
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	5 cut(s)	51, 55, 232, 427, 697
LmnI	GCTCC	5 cut(s)	76, 105, 231, 422, 463
LpnPI	CCDG	8 cut(s)	192, 391, 395, 402, 439, 627, 828, 948
Lsp1109I	GCAGC	4 cut(s)	235, 663, 691, 747
LweI	GCATC	3 cut(s)	25, 639, 945
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	5 cut(s)	53, 57, 234, 429, 699
MboI	GATC	5 cut(s)	51, 55, 232, 427, 697
MboII	GAAGA	4 cut(s)	379, 925, 928, 952
MfeI	CAATTG	1 cut(s)	862
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	3 cut(s)	128, 460, 723
MluCI	AATT	7 cut(s)	113, 242, 331, 349, 832, 862, 907
MlyI	GAGTC	2 cut(s)	878, 1014
MmeI	TCCRAC	2 cut(s)	5, 485
Mph1103I	ATGCAT	1 cut(s)	654
MseI	TTAA	3 cut(s)	99, 116, 132
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	1041
MunI	CAATTG	1 cut(s)	862
MwoI	GCNNNNNNNGC	3 cut(s)	638, 673, 744
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	5 cut(s)	51, 55, 232, 427, 697
NlaIII	CATG	6 cut(s)	97, 452, 560, 575, 656, 709
NlaIV	GGNNCC	2 cut(s)	459, 500
NsiI	ATGCAT	1 cut(s)	654
NspV	TTCGAA	1 cut(s)	852
PagI	TCATGA	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	85, 670
PkrI	GCNGC	5 cut(s)	225, 602, 678, 681, 737
PleI	GAGTC	2 cut(s)	877, 1014
PpsI	GAGTC	2 cut(s)	877, 1014
PpuMI	RGGWCCY	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	459, 500
PspPI	GGNCC	2 cut(s)	27, 498
PspPPI	RGGWCCY	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	1 cut(s)	697
PvuII	CAGCTG	1 cut(s)	1041
RsaI	GTAC	4 cut(s)	35, 183, 743, 1013
RsaNI	GTAC	4 cut(s)	34, 182, 742, 1012
RseI	CAYNNNNRTG	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	99, 116, 132
SatI	GCNGC	5 cut(s)	224, 601, 677, 680, 736
Sau3AI	GATC	5 cut(s)	51, 55, 232, 427, 697
Sau96I	GGNCC	2 cut(s)	27, 498
ScaI	AGTACT	2 cut(s)	183, 743
SchI	GAGTC	2 cut(s)	878, 1014
SduI	GDGCHC	3 cut(s)	128, 460, 723
SfaNI	GCATC	3 cut(s)	25, 639, 945
SfcI	CTRYAG	2 cut(s)	677, 950
SfuI	TTCGAA	1 cut(s)	852
SinI	GGWCC	2 cut(s)	27, 498
SmiMI	CAYNNNNRTG	1 cut(s)	657
Sse9I	AATT	7 cut(s)	113, 242, 331, 349, 832, 862, 907
SsiI	CCGC	2 cut(s)	512, 600
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	596
TaaI	ACNGT	4 cut(s)	149, 608, 776, 1016
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	54, 623, 852
TasI	AATT	7 cut(s)	113, 242, 331, 349, 832, 862, 907
TatI	WGTACW	2 cut(s)	181, 741
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	85, 670
Tru1I	TTAA	3 cut(s)	99, 116, 132
Tru9I	TTAA	3 cut(s)	99, 116, 132
TscAI	CASTG	3 cut(s)	48, 154, 822
TseI	GCWGC	4 cut(s)	223, 676, 679, 735
TspDTI	ATGAA	9 cut(s)	17, 126, 533, 545, 560, 573, 722, 780, 977
TspRI	CASTG	3 cut(s)	48, 154, 822
VneI	GTGCAC	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	27, 498
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	4 cut(s)	242, 331, 349, 907
XmiI	GTMKAC	1 cut(s)	1018
XspI	CTAG	1 cut(s)	596
ZrmI	AGTACT	2 cut(s)	183, 743
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.