RLG00000010818

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003090
Physical Location & Seq
Reverse (-)
4576541 .. 4578478
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010818

Sequence Viewer

Length: 1635 bp
ATGTTTACTGTGCTTATAGTTATCCATCATCTTCATACATTACCATATGTAGTTTCGGCTAAAAAGGCTCCGGTGGAAGGGAAAACCAGCTTCCAAGCTAAAGATCTACCATCTAATGTTGATATAGTTGGTAATGTATCGGTTTCTAATGGTTTCAACTACACTGCTACATATGCATTTCATAAGATAGCTAATACTAGCACCTCTAGTTTTGTATCAGAAGAAAGTGGAGGCTTAGACAGAAATTTAGACACTGGAGTTGTCAACATATCTGTTCAATCAAATGTGACTTCAGTGGAGAAAGATCGAACAACCTCTTCTGAGAAAATCCAAAATTCTGAGCATACTGACCTGAATGGAACAGGAAATGGTTCTTCAGTGACCAGAGTCCCTGAAGAGAACAAAGGGTCAGAGATTCCAATATTGGATGTATATACGATATCTGATATGAACAAGCTTTTGCATCATAGTCGGACCTCGTACCATTCAGTGATACCACAATGGTCTTCGTCCATAGACCAAGAGATTCAATATGCAGCATCACAGATTGGAAATGCACCCTTTATAGAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAAAAGGAGCTATGAATTAATGGAGAGCACTCTTAAAGTATACATTTACAGTGAAGGAGAAAGACCTATAATGCACACGCCAGTACTCAAAGGCATATATGCTTCTGAGGGATGGTTCATGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAAAGACCCTCAGAAAGCGCACCTCTATTACTTACCTTTCAGCTCTCTAATGTTAGAGGAAAAACTATATGTGCCAAATTCACATAGTTATAAGAATTTCGTAGAGTATTTGAAGAACTACATCAACCTGATTGCGGGGAAATATTCTTTCTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCTTGCCATGACTGGGCTCCAACAGAAACAAAGAAATACATGTCTAAGTGCATTAGGTCCCTTTGCAATGCTGATATGAAAGAAGGCTTTGTATTAGGCAAGGATGTGTCTCTTCCTGAAACAAACGTTCATGTCAAAAATCCTCTAAGAAATATAGGAGGCAACCGTCCTTCTGAGAGGTCGATACTCGCTTTCTTTGCTGGAAAGATGCATGGTTATGTTCGGCCGATTCTGCTGCAGCATTGGGAAAACAAAGATCCCGACATGAAAATTTTTGGTCGATTACCTAGAGGAAAAGGCAACAAGAACTATGTGCACCATATGAAAAGCAGCAAGTACTGCATTTGTGCAAAAGGTTATGAAGTCAACAGCCCAAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCAGTGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTCAATTGGGAGTCGTTTGCTGTTTTCGTCTTGGAGAAAGATATTCCGAATTTGAAGAAGATTTTGCTTGCAATCCCAGAGAGAAGATATCTACAGATGCAAACGAGGGTGAAAAGGGTACAGCAGCATTTTCTGTGGCATGTTATGCCTGAAAAGTATGACATTTTTCATATGATACTCCACTCCATTTGGTACAGTAGACTCTATCAGATAAAATCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

545

Amino Acids

62.41

Weight (kDa)

8.91

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 214 - 492 9e-66 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AccI GTMKAC 2 cut(s) 657, 1609
AciI CCGC 1 cut(s) 905
AclI AACGTT 1 cut(s) 1083
AclWI GGATC 2 cut(s) 569, 1208
AcoI YGGCCR 1 cut(s) 1181
AcsI RAATTY 7 cut(s) 244, 334, 761, 847, 865, 1227, 1459
AcuI CTGAAG 3 cut(s) 276, 360, 414
AfaI GTAC 5 cut(s) 482, 702, 1295, 1530, 1604
AfiI CCNNNNNNNGG 4 cut(s) 77, 904, 970, 1336
AflIII ACRYGT 1 cut(s) 996
AgsI TTSAA 5 cut(s) 157, 278, 530, 883, 1465
AluBI AGCT 8 cut(s) 90, 98, 191, 457, 627, 745, 813, 1632
AluI AGCT 8 cut(s) 90, 98, 191, 457, 627, 745, 813, 1632
Alw21I GWGCWC 2 cut(s) 647, 1275
Alw26I GTCTC 1 cut(s) 1071
Alw44I GTGCAC 1 cut(s) 1271
AlwI GGATC 2 cut(s) 569, 1208
AoxI GGCC 2 cut(s) 1181, 1344
ApaLI GTGCAC 1 cut(s) 1271
ApeKI GCWGC 6 cut(s) 536, 742, 1192, 1195, 1287, 1534
ApoI RAATTY 7 cut(s) 244, 334, 761, 847, 865, 1227, 1459
AseI ATTAAT 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 474, 1014
AsuHPI GGTGA 1 cut(s) 1531
AsuII TTCGAA 1 cut(s) 1404
AvaII GGWCC 2 cut(s) 474, 1014
BaeGI GKGCMC 1 cut(s) 1275
BanII GRGCYC 1 cut(s) 976
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 647, 1275
BbvI GCAGC 6 cut(s) 548, 754, 1179, 1207, 1299, 1546
BccI CCATC 3 cut(s) 33, 118, 723
BcgI CGANNNNNNTGC 4 cut(s) 452, 486, 1174, 1208
BcoDI GTCTC 1 cut(s) 1071
BfaI CTAG 3 cut(s) 198, 207, 1245
BfmI CTRYAG 2 cut(s) 1193, 1502
BglII AGATCT 1 cut(s) 103
BisI GCNGC 6 cut(s) 537, 743, 1193, 1196, 1288, 1535
BlsI GCNGC 6 cut(s) 538, 744, 1194, 1197, 1289, 1536
BmcAI AGTACT 2 cut(s) 702, 1295
Bme18I GGWCC 2 cut(s) 474, 1014
BmgT120I GGNCC 2 cut(s) 474, 1014
BmiI GGNNCC 3 cut(s) 69, 975, 1016
BmrI ACTGGG 1 cut(s) 979
BmsI GCATC 4 cut(s) 472, 548, 1155, 1497
BmuI ACTGGG 1 cut(s) 979
BoxI GACNNNNGTC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 1404
BsaBI GATNNNNATC 1 cut(s) 579
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 904, 970, 1336
Bse1I ACTGG 5 cut(s) 259, 698, 937, 974, 1367
Bse3DI GCAATG 1 cut(s) 1030
Bse8I GATNNNNATC 1 cut(s) 579
BseGI GGATG 3 cut(s) 433, 734, 1066
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 77, 904, 970, 1336
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 5 cut(s) 312, 330, 714, 794, 1122
BseNI ACTGG 5 cut(s) 259, 698, 937, 974, 1367
BseRI GAGGAG 1 cut(s) 582
BseSI GKGCMC 1 cut(s) 1275
BseX3I CGGCCG 1 cut(s) 1181
BseXI GCAGC 6 cut(s) 548, 754, 1179, 1207, 1299, 1546
Bsh1285I CGRYCG 1 cut(s) 1184
BshFI GGCC 2 cut(s) 1183, 1346
BsiEI CGRYCG 1 cut(s) 1184
BsiHKAI GWGCWC 2 cut(s) 647, 1275
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 374, 1000
BslI CCNNNNNNNGG 4 cut(s) 77, 904, 970, 1336
BsmAI GTCTC 1 cut(s) 1071
BsmFI GGGAC 2 cut(s) 374, 1000
BsnI GGCC 2 cut(s) 1183, 1346
Bsp119I TTCGAA 1 cut(s) 1404
Bsp1286I GDGCHC 3 cut(s) 647, 976, 1275
Bsp143I GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
BspACI CCGC 1 cut(s) 905
BspANI GGCC 2 cut(s) 1183, 1346
BspCNI CTCAG 5 cut(s) 313, 331, 715, 793, 1123
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 3 cut(s) 69, 975, 1016
BspMAI CTGCAG 1 cut(s) 1197
BspPI GGATC 2 cut(s) 569, 1208
BspT104I TTCGAA 1 cut(s) 1404
BsrDI GCAATG 1 cut(s) 1030
BsrI ACTGG 5 cut(s) 259, 698, 937, 974, 1367
BssMI GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
BssNAI GTATAC 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 10, 668, 1124, 1607
Bst6I CTCTTC 3 cut(s) 322, 390, 1074
BstAPI GCANNNNNTGC 2 cut(s) 1296, 1555
BstBI TTCGAA 1 cut(s) 1404
BstC8I GCNNGC 2 cut(s) 961, 1479
BstDEI CTNAG 8 cut(s) 235, 321, 339, 723, 780, 1002, 1103, 1131
BstF5I GGATG 3 cut(s) 433, 734, 1066
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 6 cut(s) 106, 307, 577, 754, 946, 1216
BstMAI GTCTC 1 cut(s) 1071
BstMBI GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
BstMCI CGRYCG 1 cut(s) 1184
BstMWI GCNNNNNNNGC 6 cut(s) 65, 173, 1154, 1189, 1296, 1555
BstNSI RCATGY 2 cut(s) 1000, 1553
BstPAI GACNNNNGTC 1 cut(s) 386
BstSFI CTRYAG 2 cut(s) 1193, 1502
BstSLI GKGCMC 1 cut(s) 1275
BstV1I GCAGC 6 cut(s) 548, 754, 1179, 1207, 1299, 1546
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 103, 1213
BstYI RGATCY 2 cut(s) 103, 1213
BstZ17I GTATAC 1 cut(s) 658
BstZI CGGCCG 1 cut(s) 1181
BsuRI GGCC 2 cut(s) 1183, 1346
BtsCI GGATG 3 cut(s) 433, 734, 1066
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 7 cut(s) 162, 252, 300, 384, 495, 673, 1374
Cac8I GCNNGC 2 cut(s) 961, 1479
CciI TCATGA 1 cut(s) 735
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 2 cut(s) 474, 1014
Csp6I GTAC 5 cut(s) 481, 701, 1294, 1529, 1603
CspCI CAANNNNNGTGG 2 cut(s) 1580, 1615
CviAII CATG 8 cut(s) 613, 736, 965, 997, 1088, 1169, 1222, 1550
CviQI GTAC 5 cut(s) 481, 701, 1294, 1529, 1603
DdeI CTNAG 8 cut(s) 235, 321, 339, 723, 780, 1002, 1103, 1131
DpnI GATC 6 cut(s) 105, 306, 576, 753, 945, 1215
DpnII GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 1181
EagI CGGCCG 1 cut(s) 1181
Eam1104I CTCTTC 3 cut(s) 322, 390, 1074
EarI CTCTTC 3 cut(s) 322, 390, 1074
EclXI CGGCCG 1 cut(s) 1181
Eco24I GRGCYC 1 cut(s) 976
Eco32I GATATC 2 cut(s) 441, 1499
Eco47I GGWCC 2 cut(s) 474, 1014
Eco52I CGGCCG 1 cut(s) 1181
Eco57I CTGAAG 3 cut(s) 276, 360, 414
EcoO109I RGGNCCY 1 cut(s) 1014
EcoRV GATATC 2 cut(s) 441, 1499
EcoT22I ATGCAT 2 cut(s) 178, 1170
EcoT38I GRGCYC 1 cut(s) 976
FaeI CATG 8 cut(s) 616, 739, 968, 1000, 1091, 1172, 1225, 1553
FaqI GGGAC 2 cut(s) 374, 1000
FatI CATG 8 cut(s) 612, 735, 964, 996, 1087, 1168, 1221, 1549
FauI CCCGC 1 cut(s) 898
FauNDI CATATG 4 cut(s) 46, 172, 1278, 1581
FblI GTMKAC 2 cut(s) 657, 1609
Fnu4HI GCNGC 6 cut(s) 537, 743, 1193, 1196, 1288, 1535
FokI GGATG 3 cut(s) 440, 741, 1073
FriOI GRGCYC 1 cut(s) 976
Fsp4HI GCNGC 6 cut(s) 537, 743, 1193, 1196, 1288, 1535
FspBI CTAG 3 cut(s) 198, 207, 1245
GlaI GCGC 1 cut(s) 789
GluI GCNGC 6 cut(s) 537, 743, 1193, 1196, 1288, 1535
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 1183, 1346
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 790
Hin1II CATG 8 cut(s) 616, 739, 968, 1000, 1091, 1172, 1225, 1553
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 2 cut(s) 265, 1324
HindII GTYRAC 2 cut(s) 265, 1324
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 7 cut(s) 387, 415, 526, 604, 1186, 1421, 1611
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 1531
Hpy166II GTNNAC 6 cut(s) 6, 265, 658, 1273, 1324, 1610
Hpy188III TCNNGA 4 cut(s) 736, 922, 1073, 1217
Hpy8I GTNNAC 6 cut(s) 6, 265, 658, 1273, 1324, 1610
HpyAV CCTTC 4 cut(s) 71, 665, 1034, 1137
HpyCH4III ACNGT 4 cut(s) 10, 668, 1124, 1607
HpyCH4IV ACGT 1 cut(s) 1083
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 173, 1154, 1189, 1296, 1555
HpyF3I CTNAG 8 cut(s) 235, 321, 339, 723, 780, 1002, 1103, 1131
HpySE526I ACGT 1 cut(s) 1083
Hsp92II CATG 8 cut(s) 616, 739, 968, 1000, 1091, 1172, 1225, 1553
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
LmnI GCTCC 6 cut(s) 73, 595, 624, 750, 938, 979
Lsp1109I GCAGC 6 cut(s) 548, 754, 1179, 1207, 1299, 1546
LweI GCATC 4 cut(s) 472, 548, 1155, 1497
MaeI CTAG 3 cut(s) 198, 207, 1245
MaeII ACGT 1 cut(s) 1083
MaeIII GTNAC 3 cut(s) 286, 379, 766
MalI GATC 6 cut(s) 105, 306, 576, 753, 945, 1215
MboI GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
MfeI CAATTG 1 cut(s) 1414
MflI RGATCY 2 cut(s) 103, 1213
MhlI GDGCHC 3 cut(s) 647, 976, 1275
MlyI GAGTC 3 cut(s) 396, 1430, 1605
MmeI TCCRAC 2 cut(s) 452, 1001
Mph1103I ATGCAT 2 cut(s) 178, 1170
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 3 cut(s) 618, 635, 651
MslI CAYNNNNRTG 1 cut(s) 1173
MspA1I CMGCKG 1 cut(s) 1632
MspI CCGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 1414
MwoI GCNNNNNNNGC 6 cut(s) 65, 173, 1154, 1189, 1296, 1555
NdeI CATATG 4 cut(s) 46, 172, 1278, 1581
NdeII GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
NlaIII CATG 8 cut(s) 616, 739, 968, 1000, 1091, 1172, 1225, 1553
NlaIV GGNNCC 3 cut(s) 69, 975, 1016
NmuCI GTSAC 2 cut(s) 286, 379
NsiI ATGCAT 2 cut(s) 178, 1170
NspI RCATGY 2 cut(s) 1000, 1553
NspV TTCGAA 1 cut(s) 1404
PagI TCATGA 1 cut(s) 735
PciI ACATGT 1 cut(s) 996
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 415, 526, 604, 1186
PkrI GCNGC 6 cut(s) 538, 744, 1194, 1197, 1289, 1536
PleI GAGTC 3 cut(s) 395, 1429, 1605
PpsI GAGTC 3 cut(s) 395, 1429, 1605
PpuMI RGGWCCY 1 cut(s) 1014
PscI ACATGT 1 cut(s) 996
PshAI GACNNNNGTC 1 cut(s) 386
PshBI ATTAAT 1 cut(s) 635
PsiI TTATAA 1 cut(s) 861
Psp1406I AACGTT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 1014
PspN4I GGNNCC 3 cut(s) 69, 975, 1016
PspPI GGNCC 2 cut(s) 474, 1014
PspPPI RGGWCCY 1 cut(s) 1014
PstI CTGCAG 1 cut(s) 1197
PsuI RGATCY 2 cut(s) 103, 1213
PvuII CAGCTG 1 cut(s) 1632
RsaI GTAC 5 cut(s) 482, 702, 1295, 1530, 1604
RsaNI GTAC 5 cut(s) 481, 701, 1294, 1529, 1603
RseI CAYNNNNRTG 1 cut(s) 1173
SaqAI TTAA 3 cut(s) 618, 635, 651
SatI GCNGC 6 cut(s) 537, 743, 1193, 1196, 1288, 1535
Sau3AI GATC 6 cut(s) 103, 304, 574, 751, 943, 1213
Sau96I GGNCC 2 cut(s) 474, 1014
ScaI AGTACT 2 cut(s) 702, 1295
SchI GAGTC 3 cut(s) 396, 1430, 1605
SduI GDGCHC 3 cut(s) 647, 976, 1275
SfaNI GCATC 4 cut(s) 472, 548, 1155, 1497
SfcI CTRYAG 2 cut(s) 1193, 1502
SfuI TTCGAA 1 cut(s) 1404
SinI GGWCC 2 cut(s) 474, 1014
SmiMI CAYNNNNRTG 1 cut(s) 1173
SsiI CCGC 1 cut(s) 905
SspI AATATT 2 cut(s) 423, 914
SspMI CTAG 3 cut(s) 198, 207, 1245
TaaI ACNGT 4 cut(s) 10, 668, 1124, 1607
TaiI ACGT 1 cut(s) 1086
TaqI TCGA 4 cut(s) 307, 1139, 1237, 1404
TatI WGTACW 2 cut(s) 700, 1293
TfiI GAWTC 4 cut(s) 415, 526, 604, 1186
Tru1I TTAA 3 cut(s) 618, 635, 651
Tru9I TTAA 3 cut(s) 618, 635, 651
TscAI CASTG 7 cut(s) 169, 259, 300, 384, 495, 673, 1374
TseFI GTSAC 2 cut(s) 286, 379
TseI GCWGC 6 cut(s) 536, 742, 1192, 1195, 1287, 1534
Tsp45I GTSAC 2 cut(s) 286, 379
TspRI CASTG 7 cut(s) 169, 259, 300, 384, 495, 673, 1374
VneI GTGCAC 1 cut(s) 1271
VpaK11BI GGWCC 2 cut(s) 474, 1014
VspI ATTAAT 1 cut(s) 635
XapI RAATTY 7 cut(s) 244, 334, 761, 847, 865, 1227, 1459
XceI RCATGY 2 cut(s) 1000, 1553
XmiI GTMKAC 2 cut(s) 657, 1609
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 198, 207, 1245
ZrmI AGTACT 2 cut(s) 702, 1295
Zsp2I ATGCAT 2 cut(s) 178, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.