Rh6AG459800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003090
Physical Location & Seq
Forward (+)
64274673 .. 64276026
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG459800.1

Sequence Viewer

Length: 1005 bp
ATGGGTCAGGAGCTTTTATCTTTTTGTCCAACAGAAGCGAAGAGATTGCTGTGGATTGTGGGGATGTTGTTTGCTTTGATTTTGGTCCTCCAGCATCTTGAACTTCCATACGGGAGTAATTTATCATCTGTACTTACGGCTGGACAGGTTCCAGTGGAGAAAAATAGTAGCTTCCGAGCTAGAGACCCATCATCTACTGTTAATATGGTTGGCAATGAGTCAGTTTCTAATGGTTTGGACGATACTGCTACACATCCATTTCATGAGATAGCTAACAATAATAAGACGTCTGATTTGGTATCAGACGGAAGTGGAGGCTCAGAAAGAACTTTAGAAATAGACGAGGATGAAGATGAATCTGGAAGTTTGGTAAAGGAAAATGCTACCGATATTACTCTTTCAGAAGAGAGGACTGAGAAGGGAAGTAATACTACAGACCCAGGTGGAAATGAAAATACTGGTTTTCCAACCACTCCACCGCCCGCATACCCACCGGTAAATCCATCACTTAATACATCTCCTGTAGTTGTTGAAACAGATGTTGGAGCTCCCATTATATCTGTTGACTCAAACGTGCCTTTAGTAGAGAAAGATCAAACACCCTCTTCTGAGAAAACTGACAAATCTGAGCAACTGCATAGTGGCCTCAACGAAACAGGAAAGGATTCTTCAGTGCCCAGAGTCCCTGTAGTGAACAAAGTGCCAGAGGTTTCGACATTGGAAGTATATACAATATCTGATATGAACAAGGTGTTACATCATAGTTGGACCTCGTACCATTCAATGATACCACAATGGTCTTCACCCGCTGACCAAGAGATGCAAGATGCAGCATCACAGATTGAAAATGCACCCATCATAAAGAATGATCCAAATCTTTATGCTCCTCTTTATCGGAATCTTTCTATGTTTAAAAGAAGTTATTGGAACTGCATTGTTTATGCAAAAGTTTTCTTACTGAACAAGTTATTATTAGGAATATATCTTCATGAGCAGGAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

334

Amino Acids

36.6

Weight (kDa)

4.61

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AciI CCGC 3 cut(s) 479, 483, 807
AclWI GGATC 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 2 cut(s) 132, 776
AgeI ACCGGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 101, 533, 783, 845
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 6 cut(s) 13, 171, 179, 272, 548, 1000
AluI AGCT 6 cut(s) 13, 171, 179, 272, 548, 1000
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 863
AoxI GGCC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 830
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AsiGI ACCGGT 1 cut(s) 493
Asp700I GAANNNNTTC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 85, 768
AsuHPI GGTGA 1 cut(s) 795
AvaII GGWCC 2 cut(s) 85, 768
BaeGI GKGCMC 1 cut(s) 678
BanII GRGCYC 1 cut(s) 550
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 842
BccI CCATC 3 cut(s) 196, 511, 863
BceAI ACGGC 1 cut(s) 153
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 3 cut(s) 432, 522, 687
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 2 cut(s) 85, 768
BmgT120I GGNCC 2 cut(s) 85, 768
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 4 cut(s) 103, 810, 817, 842
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 873
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 493
Bse118I RCCGGY 1 cut(s) 493
Bse1I ACTGG 2 cut(s) 152, 463
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 3 cut(s) 69, 253, 352
BseJI GATNNNNATC 1 cut(s) 873
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 333, 405, 600, 618
BseNI ACTGG 2 cut(s) 152, 463
BseRI GAGGAG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 1 cut(s) 842
BshFI GGCC 1 cut(s) 645
BshTI ACCGGT 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 550
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 1 cut(s) 645
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 550, 678
Bsp143I GATC 2 cut(s) 592, 868
BspACI CCGC 3 cut(s) 479, 483, 807
BspANI GGCC 1 cut(s) 645
BspCNI CTCAG 4 cut(s) 332, 406, 601, 619
BspHI TCATGA 2 cut(s) 262, 988
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 493
BsrI ACTGG 2 cut(s) 152, 463
BssAI RCCGGY 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 2 cut(s) 592, 868
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 3 cut(s) 35, 399, 610
BstACI GRCGYC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 4 cut(s) 319, 414, 609, 627
BstF5I GGATG 3 cut(s) 69, 253, 352
BstKTI GATC 2 cut(s) 595, 871
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 592, 868
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 3 cut(s) 432, 522, 687
BstSLI GKGCMC 1 cut(s) 678
BstV1I GCAGC 1 cut(s) 842
BstV2I GAAGAC 1 cut(s) 792
BsuRI GGCC 1 cut(s) 645
BtsCI GGATG 3 cut(s) 69, 253, 352
BtsIMutI CAGTG 2 cut(s) 159, 678
Cac8I GCNNGC 1 cut(s) 483
CciI TCATGA 2 cut(s) 262, 988
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 85, 768
Csp6I GTAC 2 cut(s) 131, 775
CspAI ACCGGT 1 cut(s) 493
CviAII CATG 2 cut(s) 263, 989
CviJI RGCY 9 cut(s) 13, 140, 171, 179, 272, 318, 548, 645, 1000
CviKI_1 RGCY 9 cut(s) 13, 140, 171, 179, 272, 318, 548, 645, 1000
CviQI GTAC 2 cut(s) 131, 775
DdeI CTNAG 4 cut(s) 319, 414, 609, 627
DpnI GATC 2 cut(s) 594, 870
DpnII GATC 2 cut(s) 592, 868
DraI TTTAAA 1 cut(s) 913
Eam1104I CTCTTC 3 cut(s) 35, 399, 610
EarI CTCTTC 3 cut(s) 35, 399, 610
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 85, 768
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 2 cut(s) 266, 992
FaqI GGGAC 1 cut(s) 668
FatI CATG 2 cut(s) 262, 988
FauI CCCGC 2 cut(s) 490, 814
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 3 cut(s) 76, 240, 359
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 831
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 831
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 645
HapII CCGG 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 266, 992
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 6 cut(s) 218, 356, 566, 665, 681, 898
HpaII CCGG 1 cut(s) 494
HphI GGTGA 1 cut(s) 795
Hpy166II GTNNAC 2 cut(s) 565, 694
Hpy188I TCNGA 9 cut(s) 176, 292, 304, 322, 403, 610, 628, 739, 897
Hpy188III TCNNGA 5 cut(s) 8, 98, 263, 360, 989
Hpy8I GTNNAC 2 cut(s) 565, 694
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 287, 573
HpyCH4V TGCA 6 cut(s) 637, 823, 830, 851, 933, 944
HpyF3I CTNAG 4 cut(s) 319, 414, 609, 627
HpySE526I ACGT 2 cut(s) 287, 573
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 266, 992
Kzo9I GATC 2 cut(s) 592, 868
LmnI GCTCC 5 cut(s) 10, 545, 553, 889, 997
Lsp1109I GCAGC 1 cut(s) 842
LweI GCATC 4 cut(s) 103, 810, 817, 842
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 287, 573
MaeIII GTNAC 1 cut(s) 753
MalI GATC 2 cut(s) 594, 870
MboI GATC 2 cut(s) 592, 868
MboII GAAGA 7 cut(s) 52, 362, 416, 597, 660, 792, 977
MhlI GDGCHC 2 cut(s) 550, 678
MluCI AATT 1 cut(s) 118
MlyI GAGTC 3 cut(s) 227, 560, 690
MmeI TCCRAC 4 cut(s) 53, 491, 523, 746
MnlI CCTC 9 cut(s) 98, 308, 337, 402, 613, 656, 700, 781, 897
MroXI GAANNNNTTC 1 cut(s) 664
MseI TTAA 3 cut(s) 201, 510, 912
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
NdeII GATC 2 cut(s) 592, 868
NlaIII CATG 2 cut(s) 266, 992
NlaIV GGNNCC 1 cut(s) 150
PagI TCATGA 2 cut(s) 262, 988
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 356, 665, 898
PinAI ACCGGT 1 cut(s) 493
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 3 cut(s) 226, 560, 689
PpsI GAGTC 3 cut(s) 226, 560, 689
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 85, 768
RsaI GTAC 2 cut(s) 132, 776
RsaNI GTAC 2 cut(s) 131, 775
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 3 cut(s) 201, 510, 912
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 2 cut(s) 592, 868
Sau96I GGNCC 2 cut(s) 85, 768
SchI GAGTC 3 cut(s) 227, 560, 690
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 2 cut(s) 550, 678
SfaNI GCATC 4 cut(s) 103, 810, 817, 842
SfcI CTRYAG 3 cut(s) 432, 522, 687
SinI GGWCC 2 cut(s) 85, 768
Sse9I AATT 1 cut(s) 118
SsiI CCGC 3 cut(s) 479, 483, 807
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 2 cut(s) 290, 576
TaqI TCGA 1 cut(s) 713
TasI AATT 1 cut(s) 118
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 3 cut(s) 356, 665, 898
Tru1I TTAA 3 cut(s) 201, 510, 912
Tru9I TTAA 3 cut(s) 201, 510, 912
TscAI CASTG 2 cut(s) 159, 678
TseI GCWGC 1 cut(s) 830
TspDTI ATGAA 6 cut(s) 251, 363, 369, 465, 758, 977
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 2 cut(s) 159, 678
VpaK11BI GGWCC 2 cut(s) 85, 768
XmnI GAANNNNTTC 1 cut(s) 664
XspI CTAG 1 cut(s) 180
ZraI GACGTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.