AT5G11630

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009762
Physical Location & Seq
Forward (+)
3740460 .. 3741827
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11630.1

Sequence Viewer

Length: 282 bp
ATGGCTTCACGATGTCGATCTTTGTCAAAACCAGCGTTTTCTGCGTTTAGATCTGCAATGAACAAGCCATCTATTCGTCCCAAATCGGCTTCATCATTCATCGGCGTCCCTCCTTCGCCTGGATTTTCGAGGCCGATTGGTCAGCTGGGTTCGCTTCAATCGTTGCTTCCATTGTACAGTGCGGTGGCTTCAGCTAGATTGACTTCGTGCCTGGGTATCGATTCACAGAATTCTAGGTCATTAGCTCAGGGTATGCTCTGCAGTGCGAATCCAGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.63

Weight (kDa)

11.32

Isoelectric Point (pI)

72.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 3 cut(s) 118, 210, 271
AluBI AGCT 3 cut(s) 145, 194, 245
AluI AGCT 3 cut(s) 145, 194, 245
AoxI GGCC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 229
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 3 cut(s) 120, 212, 273
BfaI CTAG 2 cut(s) 195, 234
BfmI CTRYAG 1 cut(s) 259
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 3 cut(s) 120, 212, 273
BmrFI CCNGG 3 cut(s) 120, 212, 273
Bpu10I CCTNAGC 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 3 cut(s) 120, 212, 273
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 219
BslFI GGGAC 2 cut(s) 63, 92
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 63, 92
BsnI GGCC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 17, 50
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 259
BspDI ATCGAT 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 2 cut(s) 17, 50
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 120, 212, 273
Bst4CI ACNGT 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 2 cut(s) 20, 53
BstMBI GATC 2 cut(s) 17, 50
BstMWI GCNNNNNNNGC 2 cut(s) 41, 151
BstNI CCWGG 3 cut(s) 120, 212, 273
BstSCI CCNGG 3 cut(s) 118, 210, 271
BstSFI CTRYAG 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 184, 268
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 8 cut(s) 5, 67, 89, 133, 145, 188, 194, 245
CviKI_1 RGCY 8 cut(s) 5, 67, 89, 133, 145, 188, 194, 245
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 19, 52
DpnII GATC 2 cut(s) 17, 50
Eco57I CTGAAG 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 229
EcoRII CCWGG 3 cut(s) 118, 210, 271
FaiI YATR 1 cut(s) 254
FaqI GGGAC 2 cut(s) 63, 92
FspBI CTAG 2 cut(s) 195, 234
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 133
HgaI GACGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 105
HinfI GANTC 2 cut(s) 221, 268
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 56, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 151
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 17, 50
LpnPI CCDG 8 cut(s) 45, 105, 131, 132, 197, 224, 233, 258
MaeI CTAG 2 cut(s) 195, 234
MalI GATC 2 cut(s) 19, 52
MboI GATC 2 cut(s) 17, 50
MflI RGATCY 1 cut(s) 50
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 120, 123
MspA1I CMGCKG 1 cut(s) 145
MspR9I CCNGG 3 cut(s) 120, 212, 273
MvaI CCWGG 3 cut(s) 120, 212, 273
MwoI GCNNNNNNNGC 2 cut(s) 41, 151
NdeII GATC 2 cut(s) 17, 50
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 2 cut(s) 221, 268
PfoI TCCNGGA 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 118, 210, 271
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 3 cut(s) 118, 210, 271
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 17, 50
ScrFI CCNGG 3 cut(s) 120, 212, 273
SetI ASST 4 cut(s) 147, 196, 239, 247
SfcI CTRYAG 1 cut(s) 259
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 195, 234
StyD4I CCNGG 3 cut(s) 118, 210, 271
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 16, 128, 219
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 221, 268
TscAI CASTG 2 cut(s) 184, 268
TspDTI ATGAA 3 cut(s) 74, 81, 88
TspRI CASTG 2 cut(s) 184, 268
XapI RAATTY 1 cut(s) 229
XspI CTAG 2 cut(s) 195, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.