Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009762

Physical Location & Seq

Genomic Coordinates Reverse (-)

26140365 .. 26142907

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTTCTCGCTGCAGATCTTTTTCAAGACCCGCCTTTTCTTTTCTGAAATCCACCGTCAACAAACCACCTCTTAAGTCCAGACCCATCTCTTCTCTCCCATCCACCCCATCACTCTCAAGGTCGGCTCCTCCGCAGTTGGGTTGTATTCAGTCTCTGCTGCCATTTCACACGGCGGTCTCTTCAGCTCGGCTGACGTCATGCCTCGGCATTGACTCGAGGAGCTCGAGGTCGTTGTCTCAGGAGCTGGGTCTCAGTGTGCCGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.53

Weight (kDa)

11.71

Isoelectric Point (pI)

93.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11630 AT5G11630 AT5G11630
fragaria_vesca	FvH4_2g35460 FvH4_2g35460
malus_domestica	MD08G1113300.v1.1 MD15G1092600.v1.1
prunus_persica	Prupe.1G447500_v2.0.a1 Prupe.1G447500_v2.0.a1
pyrus_communis	pycom15g08580
rosa_chinensis	RchiOBHm_Chr6g0306421
rosa_multiflora	Rmu_sc0002971.1_g000024
rosa_roxburghii	Rroxscaffold_7G00161790
rosa_rugosa	Rorug06G0349100 Rorug06G0349200 Rorug06G0349300
rosa_samantha	Rh6AG461500 Rh6BG439600 Rh6CG475500 Rh6DG462300
rosa_wichuraiana	Rw6G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	265
AciI	CCGC	4 cut(s)	33, 134, 176, 263
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	3 cut(s)	188, 225, 247
AluI	AGCT	3 cut(s)	188, 225, 247
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	4 cut(s)	159, 184, 243, 257
AlwNI	CAGNNNCTG	2 cut(s)	157, 247
Ama87I	CYCGRG	2 cut(s)	217, 226
ApeKI	GCWGC	2 cut(s)	12, 160
AvaI	CYCGRG	2 cut(s)	217, 226
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	3 cut(s)	95, 109, 118
BceAI	ACGGC	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	159, 184, 243, 257
BfmI	CTRYAG	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	3 cut(s)	13, 161, 263
BlsI	GCNGC	3 cut(s)	14, 162, 264
BmeT110I	CYCGRG	2 cut(s)	217, 226
BmiI	GGNNCC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	197
BsaI	GGTCTC	2 cut(s)	184, 257
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	254, 268
BseRI	GAGGAG	2 cut(s)	120, 235
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	2 cut(s)	217, 226
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	4 cut(s)	159, 184, 243, 257
Bso31I	GGTCTC	2 cut(s)	184, 257
BsoBI	CYCGRG	2 cut(s)	217, 226
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	4 cut(s)	33, 134, 176, 263
BspCNI	CTCAG	2 cut(s)	253, 267
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	74
BspTNI	GGTCTC	2 cut(s)	184, 257
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	97, 187
BstACI	GRCGYC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	240, 254
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	4 cut(s)	159, 184, 243, 257
BstMBI	GATC	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	262
CaiI	CAGNNNCTG	2 cut(s)	157, 247
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	6 cut(s)	5, 128, 188, 193, 225, 247
CviKI_1	RGCY	6 cut(s)	5, 128, 188, 193, 225, 247
DdeI	CTNAG	2 cut(s)	240, 254
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	97, 187
EarI	CTCTTC	2 cut(s)	97, 187
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	2 cut(s)	184, 257
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	217, 226
EcoICRI	GAGCTC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	204
FaiI	YATR	1 cut(s)	202
FatI	CATG	1 cut(s)	200
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	13, 161, 263
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	13, 161, 263
GluI	GCNGC	3 cut(s)	13, 161, 263
GsaI	CCCAGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	27, 81, 242
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	15
HpyF3I	CTNAG	2 cut(s)	240, 254
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	133, 222, 244
LpnPI	CCDG	3 cut(s)	94, 227, 233
Lsp1109I	GCAGC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	84, 174
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	81, 141, 213, 215, 222
MseI	TTAA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	265
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	2 cut(s)	169, 186
PaeR7I	CTCGAG	2 cut(s)	217, 226
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	14, 162, 264
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	129
PspXI	VCTCGAGB	2 cut(s)	217, 226
PstI	CTGCAG	1 cut(s)	17
PstNI	CAGNNNCTG	2 cut(s)	157, 247
PsuI	RGATCY	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	13, 161, 263
Sau3AI	GATC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	7 cut(s)	73, 125, 190, 200, 227, 233, 249
SfcI	CTRYAG	1 cut(s)	13
Sfr274I	CTCGAG	2 cut(s)	217, 226
SlaI	CTCGAG	2 cut(s)	217, 226
SmlI	CTYRAG	4 cut(s)	74, 118, 217, 226
SmoI	CTYRAG	4 cut(s)	74, 118, 217, 226
SsiI	CCGC	4 cut(s)	33, 134, 176, 263
SstI	GAGCTC	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	218, 227
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	2 cut(s)	12, 160
TspRI	CASTG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	74
XhoI	CTCGAG	2 cut(s)	217, 226
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.