Prupe.1G447500_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009762
Physical Location & Seq
Reverse (-)
37828112 .. 37830546
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G447500.2

Sequence Viewer

Length: 279 bp
ATGGCCTCTCGCTGCAGATCTTTTTCAAAGTCGGCTTTCTCTTTTCTCAAATCCACGGTGAACAAGCCAACGGTCAAACCCAGATCTATGTCTTCTCTCCCCACAACCCGCCCTTCCCTCACACTCTCAAGGCCAACTCCTCAGTTGGGTTCTCTGCAATCTTTACTTCCATTTCACTCGGCGGTCTCTTCAGCTCGGCTCACGTCGTGCCTCGGCATTGACTCGAGGAGCTCGAGGTCGTTGTCTCAGGGTATGCTCGGTGCAAACCCAGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.74

Weight (kDa)

12.0

Isoelectric Point (pI)

79.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 182
AcuI CTGAAG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 27
AjiI CACGTC 1 cut(s) 204
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 2 cut(s) 194, 231
AluI AGCT 2 cut(s) 194, 231
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 2 cut(s) 190, 249
Ama87I CYCGRG 2 cut(s) 223, 232
AoxI GGCC 2 cut(s) 3, 131
ApeKI GCWGC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 2 cut(s) 223, 232
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 190, 249
BfmI CTRYAG 1 cut(s) 13
BglII AGATCT 2 cut(s) 17, 83
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 270
BmeT110I CYCGRG 2 cut(s) 223, 232
BmgBI CACGTC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 54, 211, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 54, 211, 268
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 155, 260
BseRI GAGGAG 2 cut(s) 129, 241
BshFI GGCC 2 cut(s) 5, 133
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 223, 232
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 190, 249
BsnI GGCC 2 cut(s) 5, 133
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 2 cut(s) 223, 232
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 17, 83
BspACI CCGC 2 cut(s) 109, 182
BspANI GGCC 2 cut(s) 5, 133
BspCNI CTCAG 2 cut(s) 154, 259
BspMAI CTGCAG 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 54, 211, 268
BssMI GATC 2 cut(s) 17, 83
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 58, 73
Bst6I CTCTTC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 141, 246
BstDSI CCRYGG 1 cut(s) 54
BstKTI GATC 2 cut(s) 20, 86
BstMAI GTCTC 2 cut(s) 190, 249
BstMBI GATC 2 cut(s) 17, 83
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 17, 83
BstYI RGATCY 2 cut(s) 17, 83
BsuRI GGCC 2 cut(s) 5, 133
BtgI CCRYGG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 204
CviJI RGCY 7 cut(s) 5, 35, 67, 133, 194, 199, 231
CviKI_1 RGCY 7 cut(s) 5, 35, 67, 133, 194, 199, 231
DdeI CTNAG 2 cut(s) 141, 246
DpnI GATC 2 cut(s) 19, 85
DpnII GATC 2 cut(s) 17, 83
DraIII CACNNNGTG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 2 cut(s) 223, 232
EcoICRI GAGCTC 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 233
FaiI YATR 2 cut(s) 89, 254
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 2 cut(s) 5, 133
HinfI GANTC 1 cut(s) 221
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 58, 73
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 15, 157, 263
HpyF3I CTNAG 2 cut(s) 141, 246
HpySE526I ACGT 1 cut(s) 203
Kzo9I GATC 2 cut(s) 17, 83
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 94, 233, 255
MaeII ACGT 1 cut(s) 203
MalI GATC 2 cut(s) 19, 85
MboI GATC 2 cut(s) 17, 83
MboII GAAGA 2 cut(s) 84, 180
MflI RGATCY 2 cut(s) 17, 83
MhlI GDGCHC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 6 cut(s) 16, 128, 150, 219, 221, 228
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
NdeII GATC 2 cut(s) 17, 83
NmeAIII GCCGAG 3 cut(s) 158, 175, 192
PaeR7I CTCGAG 2 cut(s) 223, 232
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspXI VCTCGAGB 2 cut(s) 223, 232
PstI CTGCAG 1 cut(s) 17
PsuI RGATCY 2 cut(s) 17, 83
SacI GAGCTC 1 cut(s) 233
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 17, 83
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 196, 206, 233, 239
SfcI CTRYAG 1 cut(s) 13
Sfr274I CTCGAG 2 cut(s) 223, 232
SlaI CTCGAG 2 cut(s) 223, 232
SmlI CTYRAG 3 cut(s) 127, 223, 232
SmoI CTYRAG 3 cut(s) 127, 223, 232
SsiI CCGC 2 cut(s) 109, 182
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 58, 73
TaiI ACGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 224, 233
TseI GCWGC 1 cut(s) 12
XhoI CTCGAG 2 cut(s) 223, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.