AT5G11760

Eukaryotic protein of unknown function (DUF1764)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013908
Physical Location & Seq
Forward (+)
3789259 .. 3790573
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11760.1

Sequence Viewer

Length: 546 bp
ATGTCGAAGAAGAGGAAGGCTCGTAGCGGCTACTTGAAGAAGTCATCACAAGGAGGAGACGAAGCTGTGGTACAGCGAAGAAAACTAGTTCCAAAACCTGGTAAAATTGGGAAAGAGATTGATGATATCTTTGCTGGGAGATCTCAGAGGACGCCAGAGGTCCAAAATCCCGAGTCGAGAGACACGCCAGAAGCCCAAGTATCCGAGTCGAGAGACACTAGAGCTGAGATGAATGAGCTCAATGTTGGGGTCAATAACAACACTGAAAGCCGACCTAGGACGAGAATTCTCAGTAACGACACGGGACCCCGATCCAGGACGAGACGACTCCTCAGGACGAGACGACCACTCAGGACGAGAACTCTCCGTAACAACAGGGAAAGCCGACCCAGCTCGAGTATTTTTAATAACGATACGGAAGATAGCCGACCCAGGAAGACAACTGAAGACGGGTTACGAGTGTTCACGGAAAATGAAATTGGTTTCAACAGGAAAGATGCTGGTGGTACTCGTTTTTGTCCCTTTGACTGTTATTGTTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1764

Protein Analysis

181

Amino Acids

20.77

Weight (kDa)

10.42

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1764 PF08576 86 - 181 1.1e-20 Eukaryotic protein of unknown function (DUF1764)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11760
fragaria_vesca FvH4_2g32140
malus_domestica MD08G1044600.v1.1 MD15G1061800.v1.1
prunus_persica Prupe.1G414500_v2.0.a1 Prupe.1G484700_v2.0.a1
pyrus_communis pycom08g03590
rosa_chinensis RchiOBHm_Chr6g0310541
rosa_multiflora Rmu_sc0005386.1_g000001 Rmu_sc0016392.1_g000003 Rmu_sc0020729.1_g000001
rosa_roxburghii Rroxscaffold_7G00158440
rosa_rugosa Rorug06G0381400 Rorug06G0381500
rosa_samantha Rh6AG495300 Rh6CG510300
rosa_wichuraiana Rw6G043080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 72, 508
AfiI CCNNNNNNNGG 2 cut(s) 98, 315
AgsI TTSAA 2 cut(s) 37, 487
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 3 cut(s) 97, 314, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 4 cut(s) 65, 224, 238, 393
AluI AGCT 4 cut(s) 65, 224, 238, 393
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 5 cut(s) 51, 174, 207, 316, 334
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 2 cut(s) 170, 394
ApoI RAATTY 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 160, 305
AvaI CYCGRG 2 cut(s) 170, 394
AvaII GGWCC 2 cut(s) 160, 305
AvrII CCTAGG 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 332
BanII GRGCYC 1 cut(s) 240
BarI GAAGNNNNNNTAC 4 cut(s) 54, 86, 438, 470
BbsI GAAGAC 2 cut(s) 443, 453
Bbv12I GWGCWC 1 cut(s) 240
BciT130I CCWGG 3 cut(s) 99, 316, 433
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 5 cut(s) 51, 174, 207, 316, 334
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 3 cut(s) 86, 219, 276
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 28
BlnI CCTAGG 1 cut(s) 275
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 99, 316, 433
Bme18I GGWCC 2 cut(s) 160, 305
BmeT110I CYCGRG 2 cut(s) 170, 394
BmgT120I GGNCC 2 cut(s) 160, 305
BmiI GGNNCC 2 cut(s) 306, 307
BmrFI CCNGG 3 cut(s) 99, 316, 433
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 443, 453
BplI GAGNNNNNCTC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 275, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 315
Bse21I CCTNAGG 1 cut(s) 332
BseBI CCWGG 3 cut(s) 99, 316, 433
BseDI CCNNGG 2 cut(s) 275, 431
BseLI CCNNNNNNNGG 2 cut(s) 98, 315
BseMII CTCAG 5 cut(s) 158, 216, 304, 346, 364
BseRI GAGGAG 2 cut(s) 69, 320
BseYI CCCAGC 2 cut(s) 134, 389
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 170, 394
BslFI GGGAC 2 cut(s) 318, 504
BslI CCNNNNNNNGG 2 cut(s) 98, 315
BsmAI GTCTC 5 cut(s) 51, 174, 207, 316, 334
BsmBI CGTCTC 3 cut(s) 51, 316, 334
BsmFI GGGAC 2 cut(s) 318, 504
BsoBI CYCGRG 2 cut(s) 170, 394
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 140, 311
BspACI CCGC 1 cut(s) 27
BspCNI CTCAG 5 cut(s) 157, 217, 303, 345, 363
BspLI GGNNCC 2 cut(s) 306, 307
BspPI GGATC 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 275, 431
BssMI GATC 2 cut(s) 140, 311
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 3 cut(s) 99, 316, 433
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 152
BstDEI CTNAG 5 cut(s) 144, 225, 290, 332, 350
BstKTI GATC 2 cut(s) 143, 314
BstMAI GTCTC 5 cut(s) 51, 174, 207, 316, 334
BstMBI GATC 2 cut(s) 140, 311
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 3 cut(s) 99, 316, 433
BstSCI CCNGG 3 cut(s) 97, 314, 431
BstV2I GAAGAC 2 cut(s) 443, 453
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
Bsu36I CCTNAGG 1 cut(s) 332
BsuI GTATCC 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 160, 305
CseI GACGC 1 cut(s) 160
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 71, 507
CviQI GTAC 2 cut(s) 71, 507
DdeI CTNAG 5 cut(s) 144, 225, 290, 332, 350
DpnI GATC 2 cut(s) 142, 313
DpnII GATC 2 cut(s) 140, 311
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 160, 305
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 465
Eco81I CCTNAGG 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 170, 394
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 97, 314, 431
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 3 cut(s) 51, 316, 334
FaqI GGGAC 2 cut(s) 318, 504
Fnu4HI GCNGC 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 3 cut(s) 86, 219, 276
GluI GCNGC 1 cut(s) 28
GsaI CCCAGC 2 cut(s) 138, 393
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 152
HinfI GANTC 3 cut(s) 173, 206, 327
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 2 cut(s) 147, 205
Hpy188III TCNNGA 5 cut(s) 170, 177, 210, 334, 352
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 5 cut(s) 144, 225, 290, 332, 350
Hsp92I GRCGYC 1 cut(s) 152
KflI GGGWCCC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 140, 311
LweI GCATC 1 cut(s) 487
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 3 cut(s) 86, 219, 276
MaeIII GTNAC 3 cut(s) 293, 368, 453
MalI GATC 2 cut(s) 142, 313
MboI GATC 2 cut(s) 140, 311
MboII GAAGA 7 cut(s) 19, 22, 49, 90, 431, 448, 458
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 105, 285, 477
MlyI GAGTC 3 cut(s) 182, 215, 321
MnlI CCTC 5 cut(s) 6, 47, 141, 151, 341
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 3 cut(s) 99, 316, 433
MvaI CCWGG 3 cut(s) 99, 316, 433
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 2 cut(s) 140, 311
NlaIV GGNNCC 2 cut(s) 306, 307
PaeR7I CTCGAG 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 3 cut(s) 181, 214, 321
PpsI GAGTC 3 cut(s) 181, 214, 321
PpuMI RGGWCCY 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 3 cut(s) 97, 314, 431
PspFI CCCAGC 2 cut(s) 134, 389
PspGI CCWGG 3 cut(s) 97, 314, 431
PspN4I GGNNCC 2 cut(s) 306, 307
PspPI GGNCC 2 cut(s) 160, 305
PspPPI RGGWCCY 1 cut(s) 305
PspXI VCTCGAGB 1 cut(s) 394
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 2 cut(s) 72, 508
RsaNI GTAC 2 cut(s) 71, 507
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 140, 311
Sau96I GGNCC 2 cut(s) 160, 305
SchI GAGTC 3 cut(s) 182, 215, 321
ScrFI CCNGG 3 cut(s) 99, 316, 433
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 67, 100, 162, 226, 240, 277, 395
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 1 cut(s) 487
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 2 cut(s) 160, 305
SlaI CTCGAG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 3 cut(s) 105, 285, 477
SsiI CCGC 1 cut(s) 27
SspMI CTAG 3 cut(s) 86, 219, 276
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 97, 314, 431
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 530
TaqI TCGA 4 cut(s) 5, 176, 209, 395
TasI AATT 3 cut(s) 105, 285, 477
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 245, 489
TspGWI ACGGA 3 cut(s) 356, 431, 482
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 160, 305
XapI RAATTY 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 3 cut(s) 86, 219, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.