Rorug06G0381400

Eukaryotic protein of unknown function (DUF1764)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013908
Physical Location & Seq
Forward (+)
52734204 .. 52734967
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0381400.1

Sequence Viewer

Length: 684 bp
ATGGATAAAGTAGACTCTGCAGGAGAGTGTGTCCTACCGCCAGAACTGTGGAAAGAAGTCTATAAGCGGTTGGTCCTGTCTGATCGAATTCGTTTTAGTTCAATGCGTTCAATCTCCATGTGGCGGAGGCATTGCTGCTGCTTGGTCATTGTGGTTCTGGGGGTTATATACAAGAGATCATCCAACGGCTATTTGCTTACCAAACTTCATTTTTCTGATCACTTTAACCTGGTGAATCCAATTGTGAATGCTCAAATAAGAATTATACCAGGAAACTATAGCTGGGCGAGGAGGATTAAGAAGACCCTTGTAGTCAAGACGAGGTCAGCCTTCGGTGATTCCACTGTTGTTGTGCTTACTAGTGTGAACAGTGTGATTGTCTATAATTACAGTGAATTCTATGACCAAGACTTCGCAGCGCCACCCTCTGTTGATATCGCATTTTACAAGGGTAAACTACATGGTCTGGTGATTGGGGAAGGAAGGTTTGAAATTCATGTTTCTCGAGTGGACACAGTATTTGAACAGCTTTATGTTGTTCAACTTGTTCGTGGCATAGCTACTAGGGGACTAGATAAGGCATACTTGGTGGAGTCTGTTGGTGATCACTTGATTGTAACAAGACAATCTAACTTGCGTCAAACATTTGAGGTCTTTAAACTAGTTCTGGAATGGTTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1764

Protein Analysis

227

Amino Acids

26.11

Weight (kDa)

9.47

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 60 - 223 3.2e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11760
fragaria_vesca FvH4_2g32140
malus_domestica MD08G1044600.v1.1 MD15G1061800.v1.1
prunus_persica Prupe.1G414500_v2.0.a1 Prupe.1G484700_v2.0.a1
pyrus_communis pycom08g03590
rosa_chinensis RchiOBHm_Chr6g0310541
rosa_multiflora Rmu_sc0005386.1_g000001 Rmu_sc0016392.1_g000003 Rmu_sc0020729.1_g000001
rosa_roxburghii Rroxscaffold_7G00158440
rosa_rugosa Rorug06G0381400 Rorug06G0381500
rosa_samantha Rh6AG495300 Rh6CG510300
rosa_wichuraiana Rw6G043080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 12
AciI CCGC 3 cut(s) 38, 67, 124
AcsI RAATTY 3 cut(s) 87, 395, 492
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 5 cut(s) 102, 111, 491, 524, 542
AhlI ACTAGT 2 cut(s) 359, 661
AjnI CCWGG 2 cut(s) 228, 268
AluBI AGCT 3 cut(s) 282, 529, 560
AluI AGCT 3 cut(s) 282, 529, 560
Ama87I CYCGRG 1 cut(s) 504
ApeKI GCWGC 3 cut(s) 135, 138, 416
ApoI RAATTY 3 cut(s) 87, 395, 492
ArsI GACNNNNNNTTYG 4 cut(s) 395, 427, 503, 535
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 244, 347, 481, 614
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 122, 125, 428
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 230, 270
BclI TGATCA 2 cut(s) 217, 604
BcuI ACTAGT 2 cut(s) 359, 661
BfaI CTAG 4 cut(s) 360, 564, 572, 662
BfmI CTRYAG 2 cut(s) 18, 277
BfoI RGCGCY 1 cut(s) 422
BisI GCNGC 3 cut(s) 136, 139, 417
BlsI GCNGC 3 cut(s) 137, 140, 418
Bme1390I CCNGG 2 cut(s) 230, 270
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 230, 270
BpiI GAAGAC 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 2 cut(s) 230, 270
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 122, 125, 428
BseYI CCCAGC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 504
Bsp143I GATC 4 cut(s) 82, 176, 217, 604
BspACI CCGC 3 cut(s) 38, 67, 124
BspMAI CTGCAG 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 130
BssMI GATC 4 cut(s) 82, 176, 217, 604
Bst2UI CCWGG 2 cut(s) 230, 270
Bst4CI ACNGT 5 cut(s) 48, 346, 371, 392, 517
BstF5I GGATG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 4 cut(s) 85, 179, 220, 607
BstMBI GATC 4 cut(s) 82, 176, 217, 604
BstNI CCWGG 2 cut(s) 230, 270
BstSCI CCNGG 2 cut(s) 228, 268
BstSFI CTRYAG 2 cut(s) 18, 277
BstV1I GCAGC 3 cut(s) 122, 125, 428
BstV2I GAAGAC 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 3 cut(s) 342, 376, 397
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 626
CsiI ACCWGGT 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 118, 461, 497
CviJI RGCY 5 cut(s) 189, 282, 329, 529, 560
CviKI_1 RGCY 5 cut(s) 189, 282, 329, 529, 560
DpnI GATC 4 cut(s) 84, 178, 219, 606
DpnII GATC 4 cut(s) 82, 176, 217, 604
DraI TTTAAA 1 cut(s) 658
EciI GGCGGA 1 cut(s) 139
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 504
EcoRI GAATTC 2 cut(s) 87, 395
EcoRII CCWGG 2 cut(s) 228, 268
EcoRV GATATC 1 cut(s) 436
FaeI CATG 3 cut(s) 121, 464, 500
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 582
FatI CATG 3 cut(s) 117, 460, 496
FbaI TGATCA 2 cut(s) 217, 604
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 136, 139, 417
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 136, 139, 417
FspBI CTAG 4 cut(s) 360, 564, 572, 662
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 136, 139, 417
GsaI CCCAGC 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 422
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 121, 464, 500
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 4 cut(s) 14, 235, 338, 593
HphI GGTGA 4 cut(s) 244, 347, 481, 614
Hpy166II GTNNAC 4 cut(s) 13, 367, 455, 511
Hpy188I TCNGA 2 cut(s) 82, 217
Hpy188III TCNNGA 3 cut(s) 316, 504, 668
Hpy8I GTNNAC 4 cut(s) 13, 367, 455, 511
HpyAV CCTTC 3 cut(s) 340, 473, 477
HpyCH4III ACNGT 5 cut(s) 48, 346, 371, 392, 517
HpyCH4V TGCA 1 cut(s) 20
Hsp92II CATG 3 cut(s) 121, 464, 500
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 2 cut(s) 217, 604
Kzo9I GATC 4 cut(s) 82, 176, 217, 604
Lsp1109I GCAGC 3 cut(s) 122, 125, 428
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 4 cut(s) 360, 564, 572, 662
MaeIII GTNAC 1 cut(s) 616
MalI GATC 4 cut(s) 84, 178, 219, 606
MboI GATC 4 cut(s) 82, 176, 217, 604
MboII GAAGA 1 cut(s) 313
MfeI CAATTG 1 cut(s) 240
MluCI AATT 6 cut(s) 87, 240, 261, 385, 395, 492
MlyI GAGTC 2 cut(s) 8, 602
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 6 cut(s) 120, 282, 285, 315, 436, 643
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 3 cut(s) 225, 297, 657
MspR9I CCNGG 2 cut(s) 230, 270
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 2 cut(s) 230, 270
NdeII GATC 4 cut(s) 82, 176, 217, 604
NlaIII CATG 3 cut(s) 121, 464, 500
PaeR7I CTCGAG 1 cut(s) 504
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 235, 338
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 3 cut(s) 137, 140, 418
PleI GAGTC 2 cut(s) 8, 601
PpsI GAGTC 2 cut(s) 8, 601
Psp6I CCWGG 2 cut(s) 228, 268
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 228, 268
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 322
SaqAI TTAA 3 cut(s) 225, 297, 657
SatI GCNGC 3 cut(s) 136, 139, 417
Sau3AI GATC 4 cut(s) 82, 176, 217, 604
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 2 cut(s) 8, 602
ScrFI CCNGG 2 cut(s) 230, 270
SetI ASST 7 cut(s) 231, 284, 326, 488, 531, 562, 654
SexAI ACCWGGT 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 18, 277
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
SpeI ACTAGT 2 cut(s) 359, 661
Sse9I AATT 6 cut(s) 87, 240, 261, 385, 395, 492
SsiI CCGC 3 cut(s) 38, 67, 124
SspMI CTAG 4 cut(s) 360, 564, 572, 662
StyD4I CCNGG 2 cut(s) 228, 268
TaaI ACNGT 5 cut(s) 48, 346, 371, 392, 517
TaqI TCGA 2 cut(s) 85, 505
TasI AATT 6 cut(s) 87, 240, 261, 385, 395, 492
TfiI GAWTC 2 cut(s) 235, 338
Tru1I TTAA 3 cut(s) 225, 297, 657
Tru9I TTAA 3 cut(s) 225, 297, 657
TscAI CASTG 3 cut(s) 349, 376, 397
TseI GCWGC 3 cut(s) 135, 138, 416
TspDTI ATGAA 2 cut(s) 197, 485
TspRI CASTG 3 cut(s) 349, 376, 397
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 3 cut(s) 87, 395, 492
XhoI CTCGAG 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 4 cut(s) 360, 564, 572, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.