Rroxscaffold_7G00158440

Eukaryotic protein of unknown function (DUF1764)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013908
Physical Location & Seq
Reverse (-)
1886927 .. 1887337
411 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00158440.1

Sequence Viewer

Length: 411 bp
ATGGGCAAGAAGAGTAAATCTAAGACTCCTAAAGAGGTTAAAGAAGATAGTGTTGTAGAAAAGACTGTTGTGGAAGAAGAGAAACCTACGTCTTCTGCAAAACAGACTACTACTGCAAAGAAGCCTGCTTCTGTGATTGATGAGATATTCGCCGGGAAAAAGAGGAAGAAAGCTGAAGCCGAAAAGGCTAAAAAGAAAAATGAAGAGGTGAGTGAAAAACCCAACAAACCTAAGAGAAAGAAGAAGAAAGATTTAGGCTTTGAAGGCGGTGCATTTGTGGAGCCAAATTCTGGGTCAAAAAAGAGAACAAACGATGGCCTTGCTATCTATACAGAAGAAGAGTTGGGTATCAACAAAGCAGATGCTGGAAGCACCCCTCTTTGTCCATTTGATTGCTCTTGTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1764

Protein Analysis

136

Amino Acids

14.87

Weight (kDa)

9.33

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1764 PF08576 38 - 136 8.3e-27 Eukaryotic protein of unknown function (DUF1764)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11760
fragaria_vesca FvH4_2g32140
malus_domestica MD08G1044600.v1.1 MD15G1061800.v1.1
prunus_persica Prupe.1G414500_v2.0.a1 Prupe.1G484700_v2.0.a1
pyrus_communis pycom08g03590
rosa_chinensis RchiOBHm_Chr6g0310541
rosa_multiflora Rmu_sc0005386.1_g000001 Rmu_sc0016392.1_g000003 Rmu_sc0020729.1_g000001
rosa_roxburghii Rroxscaffold_7G00158440
rosa_rugosa Rorug06G0381400 Rorug06G0381500
rosa_samantha Rh6AG495300 Rh6CG510300
rosa_wichuraiana Rw6G043080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AciI CCGC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcnI CCSGG 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 290
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 318
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 4 cut(s) 5, 72, 198, 333
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 21, 231
BstMWI GCNNNNNNNGC 3 cut(s) 185, 264, 402
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 365
CviJI RGCY 7 cut(s) 124, 173, 179, 188, 258, 283, 318
CviKI_1 RGCY 7 cut(s) 124, 173, 179, 188, 258, 283, 318
DdeI CTNAG 2 cut(s) 21, 231
Eam1104I CTCTTC 4 cut(s) 5, 72, 198, 333
EarI CTCTTC 4 cut(s) 5, 72, 198, 333
Eco57I CTGAAG 1 cut(s) 195
FaiI YATR 1 cut(s) 330
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 153
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 98, 116, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 264, 402
HpyF3I CTNAG 2 cut(s) 21, 231
HpySE526I ACGT 1 cut(s) 89
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 138, 166, 276, 351
LweI GCATC 1 cut(s) 352
MaeII ACGT 1 cut(s) 89
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 4 cut(s) 28, 156, 199, 387
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 185, 264, 402
NciI CCSGG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 290
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 39
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 154
SetI ASST 6 cut(s) 39, 88, 92, 175, 210, 232
SfaNI GCATC 1 cut(s) 352
SgeI CNNG 7 cut(s) 19, 137, 165, 166, 303, 332, 378
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 92
TasI AATT 1 cut(s) 286
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.