pycom08g03590

Eukaryotic protein of unknown function (DUF1764)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013908
Physical Location & Seq
Reverse (-)
2796342 .. 2796803
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03590.1

Sequence Viewer

Length: 462 bp
ATGGGAAAAAAGAGTAAATCAAAAGCTCCCAGAGAGGTGAAAGATGATACGGTTGTAGAAGAGGAAAAGCCGCCATCTTCGCTGAAAAAGCCTACTTCTGAGGTTGATGAAACATCTGCCAAAAAGAGGAAGAAACCCGAAACTGAGAAGGGCGAGAAGTCTCCATCTTCCGCGAAGAAGCCTGCTTCTGAGATTGATGATATATTTGCAGCGAAAAAGAAGAAAACCGGGACTGGAAAGGGTAGAAAACCAAAAGAAAACTCGACTGAAAAACCGCACAAGCTCAAGACGAAGAAGAAGGATAAAGGGATTAGAGATGGCGGATTTGGGGACCTGTCTTCTCAGCCGAAAAAGAGAACACAGGATGGTCTTGCTGTTTATACAGAAGATGAGTTGGGAATTAACAATGCAGATGCTGGAAACACCCCGCTTTGTCCGTTTGATTGTTCTTGTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1764

Protein Analysis

154

Amino Acids

16.68

Weight (kDa)

9.44

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1764 PF08576 57 - 153 1.5e-26 Eukaryotic protein of unknown function (DUF1764)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11760
fragaria_vesca FvH4_2g32140
malus_domestica MD08G1044600.v1.1 MD15G1061800.v1.1
prunus_persica Prupe.1G414500_v2.0.a1 Prupe.1G484700_v2.0.a1
pyrus_communis pycom08g03590
rosa_chinensis RchiOBHm_Chr6g0310541
rosa_multiflora Rmu_sc0005386.1_g000001 Rmu_sc0016392.1_g000003 Rmu_sc0020729.1_g000001
rosa_roxburghii Rroxscaffold_7G00158440
rosa_rugosa Rorug06G0381400 Rorug06G0381500
rosa_samantha Rh6AG495300 Rh6CG510300
rosa_wichuraiana Rw6G043080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 5 cut(s) 71, 171, 275, 321, 428
AfiI CCNNNNNNNGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 26, 283
AluI AGCT 2 cut(s) 26, 283
Alw26I GTCTC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 221
BccI CCATC 4 cut(s) 82, 172, 311, 359
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 165
BisI GCNGC 2 cut(s) 71, 210
BlsI GCNGC 2 cut(s) 72, 211
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 4 cut(s) 90, 135, 180, 356
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 244, 344
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 244, 344
BspACI CCGC 5 cut(s) 71, 171, 275, 321, 428
BspCNI CTCAG 4 cut(s) 91, 136, 181, 355
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 4 cut(s) 99, 144, 189, 342
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 79, 88
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 330
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 331
CviJI RGCY 6 cut(s) 26, 70, 91, 181, 283, 346
CviKI_1 RGCY 6 cut(s) 26, 70, 91, 181, 283, 346
DdeI CTNAG 4 cut(s) 99, 144, 189, 342
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 331
FaiI YATR 2 cut(s) 203, 381
FaqI GGGAC 2 cut(s) 244, 344
FauI CCCGC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 71, 210
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 71, 210
GluI GCNGC 2 cut(s) 71, 210
HapII CCGG 1 cut(s) 228
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 100, 190
Hpy188III TCNNGA 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 142, 292
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 209, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 88
HpyF3I CTNAG 4 cut(s) 99, 144, 189, 342
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 43, 195, 219, 241, 347, 347, 402
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 403
MluCI AATT 1 cut(s) 399
MnlI CCTC 4 cut(s) 28, 55, 94, 120
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 79, 88
NciI CCSGG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 72, 211
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 331
PspPPI RGGWCCY 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 71, 210
Sau96I GGNCC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 229
SetI ASST 5 cut(s) 28, 39, 105, 285, 336
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 399
SsiI CCGC 5 cut(s) 71, 171, 275, 321, 428
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 263
TasI AATT 1 cut(s) 399
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.