AT5G11790

Ndr family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010686
Physical Location & Seq
Forward (+)
3799408 .. 3803216
3809 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11790.2

Sequence Viewer

Length: 1035 bp
ATGGCGGATTCAAGCGATTCTGTCTCCATTGATATGGAGGCATTGTCTCTTGGAGGACAGGAACACCTTGTGGAGACTACTTATGGCCCGGTTTGTGTTGCCGTTTGTGGAGATCCAGATAAACCAGCTCTTATCACTTATCCTGATATAGCTCTTAATTATATGTTCTGTTTTCAAGGATTATTGTTTTGTCCAGAAGCTAGTTCTTTGTTACTCCACAACTTTTGCATATATCACATCAGTCCTCTTGGCCATGAGTTGGGAGCTCCAATGATCAGTGTTGATGCTCCTTTGCTCTCAGCTGATGACTTAGCAGACCAGATAGTCGAGGTTCTTAATTATTTCGGACTTGGTGCAGTAATGTGTATGGGTGTCACAGCAGGAGCATACATTCTGACCTTATTTGCTATGAAGTACAGGCAGAGAGTTCTGGGCTTAATTCTCGTCTCTCCACTGTGCCAAGCGCCTTCTTGGTCAGAATGGTTGTGCAATAAGGTCATGTCTAATTTGCTTTACTATTATGGTACATGTGGAGTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAGGAAGTTCGTGGTAATGGTCATGTTCCAGAATCAGATATTGTTCAAGAATGCAGAAGATTACTTAGTGAGCGGCAGAGTACAAATGTATGGAGATTCCTTGAGGCAATCAACGGGAGAGTGGATCTTAGTGAAGGGTTAAGGAAATTGCAATGCAGAACGTTAATATTCATTGGTGAAAATTCTGCCTACCACTCCGAGGCTGTTCACATGACCACCAAACTAGACAGACGATACGGTGCATTAGTCGAGGTGCAGGGAAGCGGGTCGTTGGTGAGCGAAGAACAGCCACAGGCGATGATAATACCAATGGAATACTTTTTGATGGGATATGGCCTGTATCGTCCTACACAGAGCGTAAGTCCAAGAAGTCCTTTGAGCCCAACCCGAATCTCTCCGGAGCTTCTCTCCCCTGAAAACATGGGGTTGAAACTCAAGCCGATAAAGACACGACTCGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

344

Amino Acids

38.18

Weight (kDa)

5.56

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 2 - 251 5.4e-88 Ndr family
Abhydrolase_1 PF00561 45 - 122 8.5e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11790 AT5G11790
fragaria_vesca FvH4_2g32080 FvH4_2g32080 FvH4_2g32080 FvH4_2g32080
malus_domestica MD08G1043700.v1.1 MD15G1061200.v1.1
prunus_persica Prupe.1G413900_v2.0.a1
pyrus_communis pycom08g03530 pycom15g05730
rosa_chinensis RchiOBHm_Chr6g0310661
rosa_laevigata RLG00000010468
rosa_multiflora Rmu_sc0007390.1_g000005
rosa_roxburghii Rroxscaffold_7G00158370
rosa_rugosa Rorug06G0382000
rosa_samantha Rh6AG496000 Rh6BG505500 Rh6CG511100
rosa_wichuraiana Rw6G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 643
AccIII TCCGGA 1 cut(s) 967
AciI CCGC 3 cut(s) 5, 643, 834
AclI AACGTT 1 cut(s) 731
AclWI GGATC 2 cut(s) 107, 702
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 550
AdeI CACNNNGTG 1 cut(s) 70
AfaI GTAC 4 cut(s) 416, 526, 563, 652
AfiI CCNNNNNNNGG 2 cut(s) 259, 769
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 4 cut(s) 12, 176, 617, 1000
AluBI AGCT 6 cut(s) 128, 152, 200, 266, 302, 973
AluI AGCT 6 cut(s) 128, 152, 200, 266, 302, 973
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 4 cut(s) 28, 51, 68, 451
AlwI GGATC 2 cut(s) 107, 702
Aor13HI TCCGGA 1 cut(s) 967
AoxI GGCC 3 cut(s) 85, 250, 904
ApoI RAATTY 1 cut(s) 751
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 758, 856
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 2 cut(s) 268, 953
Bbv12I GWGCWC 1 cut(s) 268
BccI CCATC 1 cut(s) 889
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 4 cut(s) 28, 51, 68, 451
BfaI CTAG 2 cut(s) 201, 794
BfmI CTRYAG 1 cut(s) 1031
BfoI RGCGCY 1 cut(s) 467
BisI GCNGC 1 cut(s) 644
BlsI GCNGC 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpuEI CTTGAG 2 cut(s) 692, 989
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 769
Bse3DI GCAATG 1 cut(s) 728
BseAI TCCGGA 1 cut(s) 967
BseDI CCNNGG 1 cut(s) 768
BseLI CCNNNNNNNGG 2 cut(s) 259, 769
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 1 cut(s) 312
BsgI GTGCAG 2 cut(s) 375, 845
BshFI GGCC 3 cut(s) 87, 252, 906
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 2 cut(s) 89, 968
BslI CCNNNNNNNGG 2 cut(s) 259, 769
BsmAI GTCTC 4 cut(s) 28, 51, 68, 451
BsmBI CGTCTC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 3 cut(s) 87, 252, 906
Bsp1286I GDGCHC 2 cut(s) 268, 953
Bsp13I TCCGGA 1 cut(s) 967
Bsp143I GATC 3 cut(s) 112, 273, 694
BspACI CCGC 3 cut(s) 5, 643, 834
BspANI GGCC 3 cut(s) 87, 252, 906
BspCNI CTCAG 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 967
BspPI GGATC 2 cut(s) 107, 702
BsrBI CCGCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 728
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 3 cut(s) 112, 273, 694
Bst4CI ACNGT 3 cut(s) 456, 561, 809
BstDEI CTNAG 4 cut(s) 298, 310, 635, 698
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 115, 276, 697
BstMAI GTCTC 4 cut(s) 28, 51, 68, 451
BstMBI GATC 3 cut(s) 112, 273, 694
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 1031
BstX2I RGATCY 2 cut(s) 112, 694
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 2 cut(s) 112, 694
BsuRI GGCC 3 cut(s) 87, 252, 906
BtgZI GCGATG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 283, 452
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 4 cut(s) 415, 525, 562, 651
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviAII CATG 6 cut(s) 254, 499, 528, 593, 781, 991
CviQI GTAC 4 cut(s) 415, 525, 562, 651
DdeI CTNAG 4 cut(s) 298, 310, 635, 698
DpnI GATC 3 cut(s) 114, 275, 696
DpnII GATC 3 cut(s) 112, 273, 694
DraIII CACNNNGTG 1 cut(s) 70
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 250
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 268, 953
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 266
EcoT38I GRGCYC 2 cut(s) 268, 953
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 6 cut(s) 257, 502, 531, 596, 784, 994
FalI AAGNNNNNCTT 2 cut(s) 928, 960
FatI CATG 6 cut(s) 253, 498, 527, 592, 780, 990
FauI CCCGC 1 cut(s) 827
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 644
FriOI GRGCYC 2 cut(s) 268, 953
Fsp4HI GCNGC 1 cut(s) 644
FspBI CTAG 2 cut(s) 201, 794
GlaI GCGC 1 cut(s) 465
GluI GCNGC 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 467
HaeIII GGCC 3 cut(s) 87, 252, 906
HapII CCGG 2 cut(s) 89, 968
HhaI GCGC 1 cut(s) 466
Hin1II CATG 6 cut(s) 257, 502, 531, 596, 784, 994
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 6 cut(s) 8, 17, 602, 666, 960, 1023
HpaII CCGG 2 cut(s) 89, 968
HphI GGTGA 2 cut(s) 758, 856
Hpy166II GTNNAC 1 cut(s) 778
Hpy188I TCNGA 5 cut(s) 347, 396, 478, 607, 769
Hpy188III TCNNGA 6 cut(s) 116, 143, 194, 599, 617, 968
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 2 cut(s) 477, 698
HpyCH4III ACNGT 3 cut(s) 456, 561, 809
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 8 cut(s) 228, 356, 489, 624, 721, 726, 812, 826
HpyF3I CTNAG 4 cut(s) 298, 310, 635, 698
HpySE526I ACGT 1 cut(s) 731
Hsp92II CATG 6 cut(s) 257, 502, 531, 596, 784, 994
HspAI GCGC 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 112, 273, 694
LmnI GCTCC 5 cut(s) 263, 271, 292, 383, 970
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 201, 794
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 3 cut(s) 210, 373, 549
MalI GATC 3 cut(s) 114, 275, 696
MbiI CCGCTC 1 cut(s) 643
MboI GATC 3 cut(s) 112, 273, 694
MboII GAAGA 2 cut(s) 639, 863
MflI RGATCY 2 cut(s) 112, 694
MhlI GDGCHC 2 cut(s) 268, 953
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 6 cut(s) 157, 337, 438, 505, 716, 751
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 1 cut(s) 1017
MnlI CCTC 7 cut(s) 31, 47, 255, 322, 667, 763, 814
Mox20I TGGCCA 1 cut(s) 252
MroI TCCGGA 1 cut(s) 967
MscI TGGCCA 1 cut(s) 252
MseI TTAA 6 cut(s) 156, 336, 437, 540, 710, 734
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 89, 968
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 626
NciI CCSGG 1 cut(s) 89
NdeII GATC 3 cut(s) 112, 273, 694
NlaIII CATG 6 cut(s) 257, 502, 531, 596, 784, 994
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 531
PciI ACATGT 1 cut(s) 527
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 5 cut(s) 8, 17, 602, 666, 960
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 1 cut(s) 645
PleI GAGTC 1 cut(s) 1017
PpsI GAGTC 1 cut(s) 1017
PscI ACATGT 1 cut(s) 527
Psp124BI GAGCTC 1 cut(s) 268
Psp1406I AACGTT 1 cut(s) 731
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 2 cut(s) 112, 694
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 4 cut(s) 416, 526, 563, 652
RsaNI GTAC 4 cut(s) 415, 525, 562, 651
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 6 cut(s) 156, 336, 437, 540, 710, 734
SatI GCNGC 1 cut(s) 644
Sau3AI GATC 3 cut(s) 112, 273, 694
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 1017
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 268, 953
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 671, 1004
SmoI CTYRAG 2 cut(s) 671, 1004
Sse9I AATT 6 cut(s) 157, 337, 438, 505, 716, 751
SsiI CCGC 3 cut(s) 5, 643, 834
SspI AATATT 1 cut(s) 738
SspMI CTAG 2 cut(s) 201, 794
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 456, 561, 809
TaiI ACGT 1 cut(s) 734
TaqI TCGA 2 cut(s) 327, 819
TasI AATT 6 cut(s) 157, 337, 438, 505, 716, 751
TatI WGTACW 2 cut(s) 414, 650
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 5 cut(s) 8, 17, 602, 666, 960
Tru1I TTAA 6 cut(s) 156, 336, 437, 540, 710, 734
Tru9I TTAA 6 cut(s) 156, 336, 437, 540, 710, 734
TscAI CASTG 2 cut(s) 283, 459
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 425, 730
TspRI CASTG 2 cut(s) 283, 459
Van91I CCANNNNNTGG 1 cut(s) 259
XapI RAATTY 1 cut(s) 751
XceI RCATGY 1 cut(s) 531
XspI CTAG 2 cut(s) 201, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.