Prupe.1G413900_v2.0.a1

Pollen-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010686
Physical Location & Seq
Reverse (-)
36038054 .. 36043137
5084 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G413900.1

Sequence Viewer

Length: 1053 bp
ATGGGGGATTCAAGTGATTCAGTGTCGGTGGATATGGAGGGGGTTTCTCTTGGTGGAAAGGAGCATCTTGTAAAAACCTGTCTTGGCTATGTGTCTGTCGCTGTGTTGGGAGATCAGGACAAGCCAGCTCTTGTCACTTATCCAGATTTAGCCCTAAACCATATGTCCTGCTTTCAAGGACTATTATTTTGTCCAGAAGCATGTTCCTTGCTGCTCCACAACTTTTGCATATATCATATCAGTCCTCCTGGCCATGAGTTGGGAGCTTCTGCAATCAGCCTTGATGATTCTGTGTATTCTGTTGATGATTTAGTAGATCAGATTGCCGAGGTTCTTGATTTTTTTGGACTTGGTGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTACATTCTCACCCGGTTTGCTATGAAATATAGATCACGTGTCATGGGCTTGATACTTGTGTCTCCTATATGCAAAGCAGCCTCTTGGACTGAATGGTTGTATAATAAGGTGATGTCAAATTTACTGTACTTCTATGGCATGTGCGGGGTGGTAAAGGAGATACTGCTTAAGCGGTACTTCAGCAAGGAAGTTCGTGGTGGTGTTCACATACCAGAGTCAGATATAGTTCAGGCATGCAGAAGGTCGCTTGATGAAAGGCAAAGTTCAAATGTTTGGCGATTTCTTGAAGCAATGAATGGGAGACCTGACATTTCCGAAGGATTGCGAAAGCTACAATGCCGTTCACTAATATTTGTTGGGGATAGCTCTCCGTTTCACTCAGAAGCTCTGTACATGACTTCAAAACTAGACAGACGATATAGTGCCTTGGTTGAGGTTCAGGCATGCGGGTCAATGGTGACAGAGGAGCAGCCCCATGCAATGTTGATACCAATAGAGTACTTCCTCATGGGATATGGCTTATACAGGCCTTCTCAGTCTAGTGTCAGCCCGAGAAGCCCTTTAAGTCCGTCCTGCATCGCACCGGAGCTTCTTTCACCGGAAAGCATGGGCTTGAAGTTGAAACCAATAAAAACTCGGGTTCGGGATCCTCATGAGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

351

Amino Acids

38.79

Weight (kDa)

6.01

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11790 AT5G11790
fragaria_vesca FvH4_2g32080 FvH4_2g32080 FvH4_2g32080 FvH4_2g32080
malus_domestica MD08G1043700.v1.1 MD15G1061200.v1.1
prunus_persica Prupe.1G413900_v2.0.a1
pyrus_communis pycom08g03530 pycom15g05730
rosa_chinensis RchiOBHm_Chr6g0310661
rosa_laevigata RLG00000010468
rosa_multiflora Rmu_sc0007390.1_g000005
rosa_roxburghii Rroxscaffold_7G00158370
rosa_rugosa Rorug06G0382000
rosa_samantha Rh6AG496000 Rh6BG505500 Rh6CG511100
rosa_wichuraiana Rw6G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AciI CCGC 3 cut(s) 531, 559, 834
AclWI GGATC 2 cut(s) 1028, 1041
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 1 cut(s) 550
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 4 cut(s) 515, 563, 779, 887
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 7 cut(s) 12, 176, 654, 674, 789, 1003, 1009
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 8 cut(s) 128, 266, 380, 386, 718, 753, 773, 976
AluI AGCT 8 cut(s) 128, 266, 380, 386, 718, 753, 773, 976
Alw26I GTCTC 2 cut(s) 453, 682
AlwI GGATC 2 cut(s) 1028, 1041
Ama87I CYCGRG 2 cut(s) 937, 1023
AoxI GGCC 2 cut(s) 250, 914
ApeKI GCWGC 3 cut(s) 211, 464, 856
ApoI RAATTY 1 cut(s) 505
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 4 cut(s) 388, 508, 856, 975
AvaI CYCGRG 2 cut(s) 937, 1023
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BalI TGGCCA 1 cut(s) 252
BamHI GGATCC 1 cut(s) 1033
BbrPI CACGTG 1 cut(s) 425
BbvI GCAGC 3 cut(s) 198, 476, 868
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 453, 682
BfaI CTAG 2 cut(s) 794, 927
BfrI CTTAAG 1 cut(s) 554
BisI GCNGC 3 cut(s) 212, 465, 857
BlsI GCNGC 3 cut(s) 213, 466, 858
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 2 cut(s) 249, 400
BmeT110I CYCGRG 2 cut(s) 937, 1023
BmiI GGNNCC 1 cut(s) 1035
BmrFI CCNGG 2 cut(s) 249, 400
BmsI GCATC 2 cut(s) 73, 972
BpmI CTGGAG 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 2 cut(s) 327, 813
BsaWI WCCGGW 2 cut(s) 970, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 2 cut(s) 684, 873
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 327, 813
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 2 cut(s) 684, 873
BseMII CTCAG 2 cut(s) 780, 935
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 3 cut(s) 198, 476, 868
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 252, 916
BsiHKCI CYCGRG 2 cut(s) 937, 1023
BsiSI CCGG 3 cut(s) 400, 971, 986
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 453, 682
BsnI GGCC 2 cut(s) 252, 916
Bso31I GGTCTC 1 cut(s) 682
BsoBI CYCGRG 2 cut(s) 937, 1023
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 112, 316, 419, 1033
BspACI CCGC 3 cut(s) 531, 559, 834
BspANI GGCC 2 cut(s) 252, 916
BspCNI CTCAG 2 cut(s) 779, 934
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 1035
BspPI GGATC 2 cut(s) 1028, 1041
BspTI CTTAAG 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 684, 873
BsrGI TGTACA 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 327, 813
BssMI GATC 4 cut(s) 112, 316, 419, 1033
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 513
BstAFI CTTAAG 1 cut(s) 554
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 126, 622, 832
BstDEI CTNAG 2 cut(s) 766, 921
BstKTI GATC 4 cut(s) 115, 319, 422, 1036
BstMAI GTCTC 2 cut(s) 453, 682
BstMBI GATC 4 cut(s) 112, 316, 419, 1033
BstMWI GCNNNNNNNGC 1 cut(s) 942
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 4 cut(s) 204, 529, 624, 834
BstSCI CCNGG 2 cut(s) 247, 398
BstV1I GCAGC 3 cut(s) 198, 476, 868
BstX2I RGATCY 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 1033
BsuRI GGCC 2 cut(s) 252, 916
BtgZI GCGATG 1 cut(s) 949
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 27, 363
Cac8I GCNNGC 3 cut(s) 126, 622, 832
CciI TCATGA 1 cut(s) 1039
Csp6I GTAC 4 cut(s) 514, 562, 778, 886
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviQI GTAC 4 cut(s) 514, 562, 778, 886
DdeI CTNAG 2 cut(s) 766, 921
DpnI GATC 4 cut(s) 114, 318, 421, 1035
DpnII GATC 4 cut(s) 112, 316, 419, 1033
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 813
Eco147I AGGCCT 1 cut(s) 916
Eco31I GGTCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 550
Eco72I CACGTG 1 cut(s) 425
Eco88I CYCGRG 2 cut(s) 937, 1023
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 813
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FauI CCCGC 2 cut(s) 524, 827
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 212, 465, 857
Fsp4HI GCNGC 3 cut(s) 212, 465, 857
FspBI CTAG 2 cut(s) 794, 927
GluI GCNGC 3 cut(s) 212, 465, 857
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 252, 916
HapII CCGG 3 cut(s) 400, 971, 986
HinfI GANTC 4 cut(s) 8, 17, 287, 602
HpaII CCGG 3 cut(s) 400, 971, 986
HphI GGTGA 4 cut(s) 388, 508, 856, 975
Hpy166II GTNNAC 2 cut(s) 592, 731
Hpy188I TCNGA 4 cut(s) 321, 607, 703, 769
Hpy188III TCNNGA 7 cut(s) 116, 143, 194, 335, 671, 1031, 1040
Hpy8I GTNNAC 2 cut(s) 592, 731
HpyAV CCTTC 3 cut(s) 621, 698, 927
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 228, 272, 356, 459, 624, 866, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 942
HpyF3I CTNAG 2 cut(s) 766, 921
HpySE526I ACGT 1 cut(s) 424
Kzo9I GATC 4 cut(s) 112, 316, 419, 1033
LmnI GCTCC 6 cut(s) 61, 219, 263, 383, 853, 973
Lsp1109I GCAGC 3 cut(s) 198, 476, 868
LweI GCATC 2 cut(s) 73, 972
MaeI CTAG 2 cut(s) 794, 927
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 133, 373, 844
MalI GATC 4 cut(s) 114, 318, 421, 1035
MboI GATC 4 cut(s) 112, 316, 419, 1033
MflI RGATCY 1 cut(s) 1033
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 1 cut(s) 505
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 8 cut(s) 31, 255, 322, 478, 814, 844, 902, 1047
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 555, 950
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 3 cut(s) 400, 971, 986
MspR9I CCNGG 2 cut(s) 249, 400
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 942
NciI CCSGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 162
NdeII GATC 4 cut(s) 112, 316, 419, 1033
NlaIV GGNNCC 1 cut(s) 1035
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 133, 844
NspI RCATGY 4 cut(s) 204, 529, 624, 834
PaeI GCATGC 2 cut(s) 624, 834
PagI TCATGA 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 916
PfeI GAWTC 3 cut(s) 8, 17, 287
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 213, 466, 858
PleI GAGTC 1 cut(s) 610
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 247
PspCI CACGTG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 1035
PsuI RGATCY 1 cut(s) 1033
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 4 cut(s) 515, 563, 779, 887
RsaNI GTAC 4 cut(s) 514, 562, 778, 886
SaqAI TTAA 2 cut(s) 555, 950
SatI GCNGC 3 cut(s) 212, 465, 857
Sau3AI GATC 4 cut(s) 112, 316, 419, 1033
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 249, 400
SfaNI GCATC 2 cut(s) 73, 972
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SphI GCATGC 2 cut(s) 624, 834
Sse9I AATT 1 cut(s) 505
SseBI AGGCCT 1 cut(s) 916
SsiI CCGC 3 cut(s) 531, 559, 834
SspI AATATT 1 cut(s) 738
SspMI CTAG 2 cut(s) 794, 927
StuI AGGCCT 1 cut(s) 916
StyD4I CCNGG 2 cut(s) 247, 398
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 513
TaiI ACGT 1 cut(s) 427
TasI AATT 1 cut(s) 505
TatI WGTACW 3 cut(s) 513, 777, 885
TfiI GAWTC 3 cut(s) 8, 17, 287
Tru1I TTAA 2 cut(s) 555, 950
Tru9I TTAA 2 cut(s) 555, 950
TscAI CASTG 2 cut(s) 27, 363
TseFI GTSAC 2 cut(s) 133, 844
TseI GCWGC 3 cut(s) 211, 464, 856
Tsp45I GTSAC 2 cut(s) 133, 844
TspDTI ATGAA 3 cut(s) 425, 654, 695
TspGWI ACGGA 2 cut(s) 747, 945
TspRI CASTG 2 cut(s) 27, 363
Van91I CCANNNNNTGG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 554
XapI RAATTY 1 cut(s) 505
XceI RCATGY 4 cut(s) 204, 529, 624, 834
XspI CTAG 2 cut(s) 794, 927
ZrmI AGTACT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.