Rh6CG511100

Pollen-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010686
Physical Location & Seq
Forward (+)
67061061 .. 67063694
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG511100.1

Sequence Viewer

Length: 888 bp
ATGTCCTGCTTTCAAGGATTATTCTTTTGTCCAGAAGCGTGTTCCTTGCTGCTCCACAACTTTTGCATATACCATATTAGTCCTCCCGGCCACGAGTTTGGAGCGTCTTCGATCAGCCTTGATGATCCTGTGTATTCAACTGATGATTTAGTAGATCAGATTGCTGAGGTTCTCAACTTTTTTGGACTTGGTGCAGTGATGTGCATGGGGGTCACAGCTGGAGCTTACATTCTTACCCAATTTGCTATGAAATATAGATCCCGTGTCATGGGGTTGATACTTGTTTCTCCGATATGCAAAGCACCCTGCTGGACAGAATGGTTGTATAATAAGGTGATGTCAAATTTACTTTACTACTATGGCATGTGTGGTGTGGTAAAGGAGATATTGCTTAAGCGCTACTTCAGCAAGGAAGTTCGTGGTGGCGTTCAAGTACCAGAATCAGATATAGTTCAGGCATGCAGAAGATCGCTTGATGAAAGGCGGAGTTCAAATGTTTGGCGCTTTCTTGAAGCAATTAATGGGAGACCTGACATTTCTGATGGATTGCGTAAGCTACAATGTCGTTCACTAATATTTGTGGGCGAGAGCTCTCCCTTTCACTCAGAAGCTCTCTACATGACATCAAAATTAGATAGGCGATATAGTGCCTTGGTTGAGGTTCAGGCATGTGGATCAATGGTGACAGAGGAGCAGCCTCATGCAATGTTGATACCATTAGAGTACTTCCTCATGGGTTATGGCTTATACAGGCCTTCTCAGTCAAATGTCAGCCCAAGAAGCCCCTTGAGTCCGTCCTGCATTGCACCAGAGCTTCTTTCACCAGAAAGCATGGGATTGAAGTTGAAACCGATAAAGACTCGGATTCCTCATGATAGAAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

7.49

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 1 - 251 5.8e-94 Ndr family
Abhydrolase_1 PF00561 16 - 143 7.6e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11790 AT5G11790
fragaria_vesca FvH4_2g32080 FvH4_2g32080 FvH4_2g32080 FvH4_2g32080
malus_domestica MD08G1043700.v1.1 MD15G1061200.v1.1
prunus_persica Prupe.1G413900_v2.0.a1
pyrus_communis pycom08g03530 pycom15g05730
rosa_chinensis RchiOBHm_Chr6g0310661
rosa_laevigata RLG00000010468
rosa_multiflora Rmu_sc0007390.1_g000005
rosa_roxburghii Rroxscaffold_7G00158370
rosa_rugosa Rorug06G0382000
rosa_samantha Rh6AG496000 Rh6BG505500 Rh6CG511100
rosa_wichuraiana Rw6G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 484
AclWI GGATC 3 cut(s) 119, 252, 682
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 388
AfaI GTAC 2 cut(s) 435, 725
AfeI AGCGCT 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 7 cut(s) 14, 138, 431, 492, 512, 841, 847
AluBI AGCT 6 cut(s) 218, 224, 556, 591, 611, 814
AluI AGCT 6 cut(s) 218, 224, 556, 591, 611, 814
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 3 cut(s) 119, 252, 682
Aor51HI AGCGCT 1 cut(s) 398
AoxI GGCC 2 cut(s) 88, 752
ApeKI GCWGC 2 cut(s) 49, 694
ApoI RAATTY 1 cut(s) 343
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 399, 504
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 346, 694, 813
BanII GRGCYC 1 cut(s) 593
BauI CACGAG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 593
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 36, 706
BccI CCATC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 520
BfoI RGCGCY 2 cut(s) 400, 505
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 2 cut(s) 50, 695
BlsI GCNGC 2 cut(s) 51, 696
BmcAI AGTACT 1 cut(s) 725
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 808
BpuMI CCSGG 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 711, 801
BseDI CCNNGG 1 cut(s) 651
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 2 cut(s) 711, 801
BseMII CTCAG 3 cut(s) 156, 618, 773
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 2 cut(s) 36, 706
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 2 cut(s) 90, 754
BsiHKAI GWGCWC 1 cut(s) 593
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 520
BsnI GGCC 2 cut(s) 90, 754
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 6 cut(s) 111, 124, 154, 257, 467, 674
BspACI CCGC 1 cut(s) 484
BspANI GGCC 2 cut(s) 90, 754
BspCNI CTCAG 3 cut(s) 157, 617, 772
BspHI TCATGA 1 cut(s) 871
BspPI GGATC 3 cut(s) 119, 252, 682
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 711, 801
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 6 cut(s) 111, 124, 154, 257, 467, 674
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 92
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 3 cut(s) 165, 604, 759
BstH2I RGCGCY 2 cut(s) 400, 505
BstHHI GCGC 2 cut(s) 399, 504
BstKTI GATC 6 cut(s) 114, 127, 157, 260, 470, 677
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 6 cut(s) 111, 124, 154, 257, 467, 674
BstMWI GCNNNNNNNGC 2 cut(s) 405, 780
BstNSI RCATGY 3 cut(s) 367, 462, 672
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 36, 706
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 257
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 2 cut(s) 90, 754
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 460
CciI TCATGA 1 cut(s) 871
CfoI GCGC 2 cut(s) 399, 504
CseI GACGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 434, 724
CspCI CAANNNNNGTGG 2 cut(s) 44, 79
CviQI GTAC 2 cut(s) 434, 724
DdeI CTNAG 3 cut(s) 165, 604, 759
DpnI GATC 6 cut(s) 113, 126, 156, 259, 469, 676
DpnII GATC 6 cut(s) 111, 124, 154, 257, 467, 674
EaeI YGGCCR 1 cut(s) 88
EciI GGCGGA 1 cut(s) 499
Ecl136II GAGCTC 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 754
Eco24I GRGCYC 1 cut(s) 593
Eco31I GGTCTC 1 cut(s) 520
Eco47III AGCGCT 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 591
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 651
FalI AAGNNNNNCTT 2 cut(s) 386, 418
Fnu4HI GCNGC 2 cut(s) 50, 695
FriOI GRGCYC 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 50, 695
GlaI GCGC 2 cut(s) 398, 503
GluI GCNGC 2 cut(s) 50, 695
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 2 cut(s) 400, 505
HaeIII GGCC 2 cut(s) 90, 754
HapII CCGG 1 cut(s) 87
HgaI GACGC 1 cut(s) 93
HhaI GCGC 2 cut(s) 399, 504
Hin6I GCGC 2 cut(s) 397, 502
HinP1I GCGC 2 cut(s) 397, 502
HinfI GANTC 4 cut(s) 440, 790, 859, 865
HpaII CCGG 1 cut(s) 87
HphI GGTGA 3 cut(s) 346, 694, 813
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 6 cut(s) 159, 291, 445, 541, 607, 864
Hpy188III TCNNGA 3 cut(s) 32, 509, 872
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 1 cut(s) 765
HpyCH4V TGCA 8 cut(s) 66, 194, 204, 297, 462, 704, 801, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 405, 780
HpyF3I CTNAG 3 cut(s) 165, 604, 759
HspAI GCGC 2 cut(s) 397, 502
Kzo9I GATC 6 cut(s) 111, 124, 154, 257, 467, 674
LmnI GCTCC 4 cut(s) 57, 101, 221, 691
Lsp1109I GCAGC 2 cut(s) 36, 706
MaeIII GTNAC 2 cut(s) 211, 682
MalI GATC 6 cut(s) 113, 126, 156, 259, 469, 676
MboI GATC 6 cut(s) 111, 124, 154, 257, 467, 674
MboII GAAGA 2 cut(s) 99, 477
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 593
MluCI AATT 4 cut(s) 239, 343, 516, 629
MlyI GAGTC 2 cut(s) 799, 853
MnlI CCTC 7 cut(s) 93, 160, 652, 682, 708, 740, 879
MseI TTAA 2 cut(s) 393, 519
MspA1I CMGCKG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 405, 780
NciI CCSGG 1 cut(s) 87
NdeII GATC 6 cut(s) 111, 124, 154, 257, 467, 674
NmuCI GTSAC 2 cut(s) 211, 682
NspI RCATGY 3 cut(s) 367, 462, 672
PaeI GCATGC 1 cut(s) 462
PagI TCATGA 1 cut(s) 871
PceI AGGCCT 1 cut(s) 754
PfeI GAWTC 2 cut(s) 440, 865
PkrI GCNGC 2 cut(s) 51, 696
PleI GAGTC 2 cut(s) 798, 853
PpsI GAGTC 2 cut(s) 798, 853
PshBI ATTAAT 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 593
PsuI RGATCY 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 435, 725
RsaNI GTAC 2 cut(s) 434, 724
SacI GAGCTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 393, 519
SatI GCNGC 2 cut(s) 50, 695
Sau3AI GATC 6 cut(s) 111, 124, 154, 257, 467, 674
ScaI AGTACT 1 cut(s) 725
SchI GAGTC 2 cut(s) 799, 853
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 593
SmlI CTYRAG 2 cut(s) 392, 787
SmoI CTYRAG 2 cut(s) 392, 787
SphI GCATGC 1 cut(s) 462
Sse9I AATT 4 cut(s) 239, 343, 516, 629
SseBI AGGCCT 1 cut(s) 754
SsiI CCGC 1 cut(s) 484
SspI AATATT 1 cut(s) 576
SstI GAGCTC 1 cut(s) 593
StuI AGGCCT 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 1 cut(s) 651
TaqI TCGA 1 cut(s) 110
TasI AATT 4 cut(s) 239, 343, 516, 629
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 440, 865
Tru1I TTAA 2 cut(s) 393, 519
Tru9I TTAA 2 cut(s) 393, 519
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 2 cut(s) 211, 682
TseI GCWGC 2 cut(s) 49, 694
Tsp45I GTSAC 2 cut(s) 211, 682
TspDTI ATGAA 2 cut(s) 263, 492
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 1 cut(s) 201
Vha464I CTTAAG 1 cut(s) 392
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 1 cut(s) 343
XceI RCATGY 3 cut(s) 367, 462, 672
ZrmI AGTACT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.