pycom08g03530

Pollen-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010686
Physical Location & Seq
Reverse (-)
2758540 .. 2761905
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03530.5

Sequence Viewer

Length: 1041 bp
ATGGGGGATTCAAGTGATTCAGTGTCGGTGGATATGGAGGGGGTTTCTCTTGGCGGAAAGGAGCATCTTGTAAGAACCTGTCTTGGTTATGTGTCCGTCGCTGTGTTGGGAGATCCGGACAAGCCAGCTCTTGTCACGTATCCTGATTTAGCCTTAAATCATATGTCCTGCTTTCAAGGATTATTCCTTTGTCCAGAAGCTTGGTCCTTGCTGCTCCACAACTTTTGCATATATCATATCAGTCCTCCTGGGCATGAGTTGGGAGCTTCTGCAATCAGCCTTGATGATCCTTTGTATTCTGTTGATGATTTAGTAGATCAGATTGCTGAGGTTCTCGACTTTTTCGGACTCGGTGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTTCATTCTCACCCAATTTGCTATGAAATATAGACCACGTGTCATGGGTTTGATACTTGTTTCTCCTATATGTAAAGCAGCCACTTGGACAGAATGGTTGTATAATAAGGTGATGTCGAATTTACTTTACTTTTATGGCATGTGCGGGGTGGTTAAGGAGATATTGCTTAACCGGTACTTCAGCAAGGAAGTTCGTGGTGGTGTTCAAGTACCAGAGTCGGATATAGTTCAGGCATGCAGAAGATCGCTAGACGAAAGGCATAGTTCGAATGTTTGGCGGTTTCTTGAAGCAATGAATGGGAGGCCTGACATTTCTGAAAGATTGAGAAAGCTACAATGCCGTACGCTAATATTTGTTGGGGACAGCTCTCCGTTTCACTCAGAAGCTCTGTACATGACCTCAAAACTAGATAGAAGATATAGTGCCTTAGTTGAGGTTCAGGCATGTGGGTCGATGGTGACAGAGGAGCAGCCACATGCGATGTTGATACCGCTAGAGTACTTCCTCATGGGATATGGTTTACACAGGCCTTCTCAGTCTAGTGTCAGCCCAAGAAGCCCCTTGAGTCCTTCCTGCATCGCGCCTGAGCTTCTTTCACCAGAAAGCATGGGCTTGAAGTTGAAACCGATAAAAACTCGGATTCCTCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

347

Amino Acids

38.39

Weight (kDa)

5.93

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010686)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11790 AT5G11790
fragaria_vesca FvH4_2g32080 FvH4_2g32080 FvH4_2g32080 FvH4_2g32080
malus_domestica MD08G1043700.v1.1 MD15G1061200.v1.1
prunus_persica Prupe.1G413900_v2.0.a1
pyrus_communis pycom08g03530 pycom15g05730
rosa_chinensis RchiOBHm_Chr6g0310661
rosa_laevigata RLG00000010468
rosa_multiflora Rmu_sc0007390.1_g000005
rosa_roxburghii Rroxscaffold_7G00158370
rosa_rugosa Rorug06G0382000
rosa_samantha Rh6AG496000 Rh6BG505500 Rh6CG511100
rosa_wichuraiana Rw6G043130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 968
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 4 cut(s) 54, 531, 664, 878
AclWI GGATC 2 cut(s) 107, 281
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 1 cut(s) 550
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 5 cut(s) 563, 597, 730, 779, 887
AflIII ACRYGT 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 558
AgsI TTSAA 6 cut(s) 12, 176, 593, 674, 1003, 1009
AhdI GACNNNNNGTC 1 cut(s) 425
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 9 cut(s) 128, 200, 266, 380, 386, 718, 753, 773, 976
AluI AGCT 9 cut(s) 128, 200, 266, 380, 386, 718, 753, 773, 976
AlwI GGATC 2 cut(s) 107, 281
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 689, 914
ApeKI GCWGC 3 cut(s) 211, 464, 856
ApoI RAATTY 1 cut(s) 505
AsiGI ACCGGT 1 cut(s) 558
AspLEI GCGC 1 cut(s) 970
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 4 cut(s) 388, 508, 856, 975
AsuII TTCGAA 1 cut(s) 653
AvaII GGWCC 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 198, 476, 868
BccI CCATC 1 cut(s) 835
BceAI ACGGC 1 cut(s) 711
BcgI CGANNNNNNTGC 2 cut(s) 819, 853
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 1 cut(s) 150
BfaI CTAG 4 cut(s) 635, 794, 881, 927
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 3 cut(s) 212, 465, 857
BlsI GCNGC 3 cut(s) 213, 466, 858
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 73, 972
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 2 cut(s) 327, 972
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 970
BsaAI YACGTR 2 cut(s) 138, 425
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 115, 558
Bse118I RCCGGY 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 4 cut(s) 318, 780, 935, 963
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 3 cut(s) 198, 476, 868
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 2 cut(s) 691, 916
BshTI ACCGGT 1 cut(s) 558
BsiSI CCGG 2 cut(s) 116, 559
BsiWI CGTACG 1 cut(s) 728
BslFI GGGAC 1 cut(s) 761
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 2 cut(s) 691, 916
Bsp119I TTCGAA 1 cut(s) 653
Bsp13I TCCGGA 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 112, 286, 316, 629
BspACI CCGC 4 cut(s) 54, 531, 664, 878
BspANI GGCC 2 cut(s) 691, 916
BspCNI CTCAG 4 cut(s) 319, 779, 934, 964
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 1 cut(s) 968
BspPI GGATC 2 cut(s) 107, 281
BspT104I TTCGAA 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 558
BsrGI TGTACA 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 4 cut(s) 112, 286, 316, 629
Bst2UI CCWGG 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 2 cut(s) 138, 425
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 126, 622
BstDEI CTNAG 5 cut(s) 327, 766, 814, 921, 972
BstFNI CGCG 1 cut(s) 968
BstHHI GCGC 1 cut(s) 970
BstKTI GATC 4 cut(s) 115, 289, 319, 632
BstMBI GATC 4 cut(s) 112, 286, 316, 629
BstMWI GCNNNNNNNGC 1 cut(s) 942
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 4 cut(s) 529, 624, 834, 866
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 3 cut(s) 198, 476, 868
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 691, 916
BtgZI GCGATG 2 cut(s) 881, 949
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 27, 363
Cac8I GCNNGC 2 cut(s) 126, 622
CfoI GCGC 1 cut(s) 970
Cfr10I RCCGGY 1 cut(s) 558
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 5 cut(s) 562, 596, 729, 778, 886
CspAI ACCGGT 1 cut(s) 558
CspCI CAANNNNNGTGG 2 cut(s) 206, 241
CviAII CATG 9 cut(s) 254, 430, 526, 621, 781, 831, 863, 895, 994
CviQI GTAC 5 cut(s) 562, 596, 729, 778, 886
DdeI CTNAG 5 cut(s) 327, 766, 814, 921, 972
DpnI GATC 4 cut(s) 114, 288, 318, 631
DpnII GATC 4 cut(s) 112, 286, 316, 629
DriI GACNNNNNGTC 1 cut(s) 425
Eam1105I GACNNNNNGTC 1 cut(s) 425
EciI GGCGGA 1 cut(s) 69
Eco147I AGGCCT 2 cut(s) 691, 916
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 550
Eco72I CACGTG 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 9 cut(s) 257, 433, 529, 624, 784, 834, 866, 898, 997
FaqI GGGAC 1 cut(s) 761
FatI CATG 9 cut(s) 253, 429, 525, 620, 780, 830, 862, 894, 993
FauI CCCGC 1 cut(s) 524
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 212, 465, 857
Fsp4HI GCNGC 3 cut(s) 212, 465, 857
FspBI CTAG 4 cut(s) 635, 794, 881, 927
GlaI GCGC 1 cut(s) 969
GluI GCNGC 3 cut(s) 212, 465, 857
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 691, 916
HapII CCGG 2 cut(s) 116, 559
HhaI GCGC 1 cut(s) 970
Hin1II CATG 9 cut(s) 257, 433, 529, 624, 784, 834, 866, 898, 997
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 6 cut(s) 8, 17, 348, 602, 952, 1027
HpaII CCGG 2 cut(s) 116, 559
HphI GGTGA 4 cut(s) 388, 508, 856, 975
Hpy166II GTNNAC 1 cut(s) 908
Hpy188I TCNGA 6 cut(s) 321, 347, 607, 703, 769, 1026
Hpy188III TCNNGA 6 cut(s) 116, 143, 194, 335, 671, 1038
Hpy8I GTNNAC 1 cut(s) 908
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 927, 966
HpyCH4IV ACGT 2 cut(s) 137, 424
HpyCH4V TGCA 5 cut(s) 228, 272, 356, 624, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 942
HpyF3I CTNAG 5 cut(s) 327, 766, 814, 921, 972
HpySE526I ACGT 2 cut(s) 137, 424
Hsp92II CATG 9 cut(s) 257, 433, 529, 624, 784, 834, 866, 898, 997
HspAI GCGC 1 cut(s) 968
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 112, 286, 316, 629
LmnI GCTCC 5 cut(s) 61, 219, 263, 383, 853
Lsp1109I GCAGC 3 cut(s) 198, 476, 868
LweI GCATC 2 cut(s) 73, 972
MaeI CTAG 4 cut(s) 635, 794, 881, 927
MaeII ACGT 2 cut(s) 137, 424
MaeIII GTNAC 3 cut(s) 133, 373, 844
MalI GATC 4 cut(s) 114, 288, 318, 631
MboI GATC 4 cut(s) 112, 286, 316, 629
MboII GAAGA 2 cut(s) 639, 813
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 401, 505
MlyI GAGTC 3 cut(s) 342, 611, 961
MmeI TCCRAC 1 cut(s) 585
MnlI CCTC 9 cut(s) 31, 255, 322, 681, 796, 814, 844, 902, 1041
MroI TCCGGA 1 cut(s) 115
MseI TTAA 3 cut(s) 155, 540, 555
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 116, 559
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 1 cut(s) 942
NdeI CATATG 1 cut(s) 162
NdeII GATC 4 cut(s) 112, 286, 316, 629
NlaIII CATG 9 cut(s) 257, 433, 529, 624, 784, 834, 866, 898, 997
NmuCI GTSAC 2 cut(s) 133, 844
NspI RCATGY 4 cut(s) 529, 624, 834, 866
NspV TTCGAA 1 cut(s) 653
PaeI GCATGC 1 cut(s) 624
PceI AGGCCT 2 cut(s) 691, 916
PfeI GAWTC 3 cut(s) 8, 17, 1027
Pfl23II CGTACG 1 cut(s) 728
PinAI ACCGGT 1 cut(s) 558
PkrI GCNGC 3 cut(s) 213, 466, 858
PleI GAGTC 3 cut(s) 342, 610, 960
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
PpsI GAGTC 3 cut(s) 342, 610, 960
Ppu21I YACGTR 2 cut(s) 138, 425
Psp6I CCWGG 1 cut(s) 247
PspCI CACGTG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 247
PspLI CGTACG 1 cut(s) 728
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 5 cut(s) 563, 597, 730, 779, 887
RsaNI GTAC 5 cut(s) 562, 596, 729, 778, 886
SaqAI TTAA 3 cut(s) 155, 540, 555
SatI GCNGC 3 cut(s) 212, 465, 857
Sau3AI GATC 4 cut(s) 112, 286, 316, 629
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 3 cut(s) 342, 611, 961
ScrFI CCNGG 1 cut(s) 249
SfaNI GCATC 2 cut(s) 73, 972
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
SphI GCATGC 1 cut(s) 624
Sse9I AATT 2 cut(s) 401, 505
SseBI AGGCCT 2 cut(s) 691, 916
SsiI CCGC 4 cut(s) 54, 531, 664, 878
SspI AATATT 1 cut(s) 738
SspMI CTAG 4 cut(s) 635, 794, 881, 927
StuI AGGCCT 2 cut(s) 691, 916
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 2 cut(s) 140, 427
TaqI TCGA 4 cut(s) 336, 503, 653, 839
TasI AATT 2 cut(s) 401, 505
TatI WGTACW 2 cut(s) 777, 885
TfiI GAWTC 3 cut(s) 8, 17, 1027
Tru1I TTAA 3 cut(s) 155, 540, 555
Tru9I TTAA 3 cut(s) 155, 540, 555
TscAI CASTG 2 cut(s) 27, 363
TseFI GTSAC 2 cut(s) 133, 844
TseI GCWGC 3 cut(s) 211, 464, 856
Tsp45I GTSAC 2 cut(s) 133, 844
TspDTI ATGAA 3 cut(s) 379, 425, 695
TspGWI ACGGA 2 cut(s) 85, 747
TspRI CASTG 2 cut(s) 27, 363
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 505
XceI RCATGY 4 cut(s) 529, 624, 834, 866
XspI CTAG 4 cut(s) 635, 794, 881, 927
ZrmI AGTACT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.