Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1843466 .. 1847439

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGGGATTCTAGTGGTGATTCAGTGTCGGTGGACATGGAGGGGGTTTCTCTCTGCGGAAAGGAGCATCTTGTACAAACTTGTCATGGTTATGTGTCCGTTGCCGTGTTGGGAGATCAGGACAAACCAGCTCTCGTCACTTACCCCGATTTGGCTTTAAATCATATGTCCTGCTTTCAAGGATTATTCTTTTGTCCAGAAGCGTGTTCCTTGCTGCTCCACAACTTTTGCATATACCATATTAGTCCTCCCGGCCACGAGTTTGGAGCGTGTTCGATCAGCCTTGATGATCCTGTGTATTCCACTGATGATTTAGTAGATCAGATTGCTGAGGTGATGTCAAATTTACTTTACTACTATGGCATGTGTGGTGTGGTAAAGGAGATATTGCTTAAGCGCTACTTCAGCAAGGAAGTTCGTGGTGGGGTTCAAGTACCAGAATCAGATATAGTTCAGGCATGCAGAAGATCACTTGATGAAAGGCGGAGTTCAAATGTTTGGCGCTTTCTTGAAGCAATTAATGGGAGACCTGACATTTCTGATGGATTGCGTAAGCTACAATGTCGTTCACTAATATTTGTGGGCGAGAGCTCTCCCTTTCACTCAGAAGCTCTCTACATGACATCAAAATTAGATAGGCGATATAGTGCCTTGGTTGAGGTTCAGGCATGTGGATCAATGGTGACAGAGGAGCAGCCTCATGCAATGTTGATACCATTAGAGTACTTCCTCATGGGTTATGGCTTATACAGGCCTTCTCAGTCAAATGTCAGCCCAAGAAGCCCCTTGAGTCCGTCCTGCATTGCACCGGAGCTTCTTTCACCAGAAAGCATGGGATTGAAGTTGAAACCGATAAAGACTCGGATTCCTCATGATAGAAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndr

Protein Analysis

295

Amino Acids

32.75

Weight (kDa)

5.48

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	22 - 115	2.2e-30	Ndr family
Ndr	PF03096	112 - 251	1.8e-42	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010686)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11790 AT5G11790
fragaria_vesca	FvH4_2g32080 FvH4_2g32080 FvH4_2g32080 FvH4_2g32080
malus_domestica	MD08G1043700.v1.1 MD15G1061200.v1.1
prunus_persica	Prupe.1G413900_v2.0.a1
pyrus_communis	pycom08g03530 pycom15g05730
rosa_chinensis	RchiOBHm_Chr6g0310661
rosa_laevigata	RLG00000010468
rosa_multiflora	Rmu_sc0007390.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158370
rosa_rugosa	Rorug06G0382000
rosa_samantha	Rh6AG496000 Rh6BG505500 Rh6CG511100
rosa_wichuraiana	Rw6G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 484
AclWI	GGATC	2 cut(s)	284, 682
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	3 cut(s)	75, 435, 725
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	6 cut(s)	179, 431, 492, 512, 841, 847
AluBI	AGCT	6 cut(s)	131, 556, 591, 611, 814, 885
AluI	AGCT	6 cut(s)	131, 556, 591, 611, 814, 885
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	2 cut(s)	284, 682
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	2 cut(s)	253, 752
ApeKI	GCWGC	2 cut(s)	214, 694
ApoI	RAATTY	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	399, 504
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	4 cut(s)	29, 346, 694, 813
BanII	GRGCYC	1 cut(s)	593
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	593
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	201, 706
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	2 cut(s)	400, 505
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	215, 695
BlsI	GCNGC	2 cut(s)	216, 696
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	711, 801
BseDI	CCNNGG	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	2 cut(s)	711, 801
BseMII	CTCAG	3 cut(s)	321, 618, 773
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	201, 706
BshFI	GGCC	2 cut(s)	255, 754
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	252, 809
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	255, 754
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
BspACI	CCGC	2 cut(s)	57, 484
BspANI	GGCC	2 cut(s)	255, 754
BspCNI	CTCAG	3 cut(s)	322, 617, 772
BspHI	TCATGA	1 cut(s)	871
BspPI	GGATC	2 cut(s)	284, 682
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	711, 801
BsrGI	TGTACA	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	257
BstAFI	CTTAAG	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	3 cut(s)	330, 604, 759
BstH2I	RGCGCY	2 cut(s)	400, 505
BstHHI	GCGC	2 cut(s)	399, 504
BstKTI	GATC	6 cut(s)	118, 279, 292, 322, 470, 677
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 780
BstNSI	RCATGY	3 cut(s)	367, 462, 672
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	201, 706
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	255, 754
BtsIMutI	CAGTG	2 cut(s)	30, 303
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	2 cut(s)	399, 504
Csp6I	GTAC	3 cut(s)	74, 434, 724
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviQI	GTAC	3 cut(s)	74, 434, 724
DdeI	CTNAG	3 cut(s)	330, 604, 759
DpnI	GATC	6 cut(s)	117, 278, 291, 321, 469, 676
DpnII	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	520
Eco47III	AGCGCT	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	651
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	215, 695
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	215, 695
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	398, 503
GluI	GCNGC	2 cut(s)	215, 695
HaeII	RGCGCY	2 cut(s)	400, 505
HaeIII	GGCC	2 cut(s)	255, 754
HapII	CCGG	2 cut(s)	252, 809
HhaI	GCGC	2 cut(s)	399, 504
Hin6I	GCGC	2 cut(s)	397, 502
HinP1I	GCGC	2 cut(s)	397, 502
HinfI	GANTC	6 cut(s)	8, 20, 440, 790, 859, 865
HpaII	CCGG	2 cut(s)	252, 809
HphI	GGTGA	4 cut(s)	29, 346, 694, 813
Hpy166II	GTNNAC	2 cut(s)	34, 569
Hpy188I	TCNGA	5 cut(s)	324, 445, 541, 607, 864
Hpy188III	TCNNGA	4 cut(s)	119, 197, 509, 872
Hpy8I	GTNNAC	2 cut(s)	34, 569
HpyAV	CCTTC	1 cut(s)	765
HpyCH4V	TGCA	5 cut(s)	231, 462, 704, 801, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 780
HpyF3I	CTNAG	3 cut(s)	330, 604, 759
HspAI	GCGC	2 cut(s)	397, 502
Kzo9I	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
LmnI	GCTCC	5 cut(s)	64, 222, 266, 691, 811
Lsp1109I	GCAGC	2 cut(s)	201, 706
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	136, 682
MalI	GATC	6 cut(s)	117, 278, 291, 321, 469, 676
MboI	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
MboII	GAAGA	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	3 cut(s)	343, 516, 629
MlyI	GAGTC	2 cut(s)	799, 853
MnlI	CCTC	8 cut(s)	34, 258, 325, 652, 682, 708, 740, 879
MseI	TTAA	3 cut(s)	158, 393, 519
MslI	CAYNNNNRTG	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	2 cut(s)	252, 809
MspR9I	CCNGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	405, 780
NciI	CCSGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
NmuCI	GTSAC	2 cut(s)	136, 682
NspI	RCATGY	3 cut(s)	367, 462, 672
PaeI	GCATGC	1 cut(s)	462
PagI	TCATGA	1 cut(s)	871
PceI	AGGCCT	1 cut(s)	754
PfeI	GAWTC	4 cut(s)	8, 20, 440, 865
PkrI	GCNGC	2 cut(s)	216, 696
PleI	GAGTC	2 cut(s)	798, 853
PpsI	GAGTC	2 cut(s)	798, 853
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	593
RsaI	GTAC	3 cut(s)	75, 435, 725
RsaNI	GTAC	3 cut(s)	74, 434, 724
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	3 cut(s)	158, 393, 519
SatI	GCNGC	2 cut(s)	215, 695
Sau3AI	GATC	6 cut(s)	115, 276, 289, 319, 467, 674
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	2 cut(s)	799, 853
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	9 cut(s)	133, 336, 532, 558, 593, 613, 663, 816, 887
SfaNI	GCATC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	392, 787
SmoI	CTYRAG	2 cut(s)	392, 787
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	3 cut(s)	343, 516, 629
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	2 cut(s)	57, 484
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	651
TaqI	TCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	343, 516, 629
TatI	WGTACW	2 cut(s)	73, 723
TfiI	GAWTC	4 cut(s)	8, 20, 440, 865
Tru1I	TTAA	3 cut(s)	158, 393, 519
Tru9I	TTAA	3 cut(s)	158, 393, 519
TscAI	CASTG	2 cut(s)	30, 310
TseFI	GTSAC	2 cut(s)	136, 682
TseI	GCWGC	2 cut(s)	214, 694
Tsp45I	GTSAC	2 cut(s)	136, 682
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	2 cut(s)	88, 783
TspRI	CASTG	2 cut(s)	30, 310
Vha464I	CTTAAG	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	3 cut(s)	367, 462, 672
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.