Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011465

Physical Location & Seq

Genomic Coordinates Reverse (-)

3974119 .. 3978221

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGGATTCGCAACCTCCGGTTAACGAGTCAACCCCGTCGACGGCGCTGTCAAACTTCGGAGAGCTAGTTCCATTTTATTCGAGTTACCTTTGGAATCGCCTTGCTTCCTTGTTGCCTACTTCCAAACCCATTTTTCTCGGGAAAATCTCCAATCTCTATCGCCAAACAGTTTCGAGAAAACGAAGTATTTCATTTCCTCTTCCTCTACCCTCCGATTTCCCAAGTTCTTCTACAATTACAAGCAATGTCTCTGCGGATACAGCTAGGATTCATGGTGTGTTGGAGGAAATTATGGCTGACGTTCTCTCGAATTTGCATGATATTCAGAAAAGTTTAGATTTTTGGCGATCTAGAGCTGAGGGTTCCAATGCTCGAAAAGCGTACTTCATGATTTTTGAGAGAGGACCAACAGCTTTTGTGAACGAGAGTACGAAGTTCGTGAGCAAAAGTCTCAGTGAGGATTCTGCGATGCAGCATCTTTGTCAGTCATCTTCGTCTCACATGACAGAGAGGATGCGGGTCTTGGTGGAGTTAAGATCTGCACTCGCGTCCTTTATTGCCCAGCTTTATGTTGAGTTGGATAAACGTGGAGAGGATCTTGTGAAGATTCCAGAAAAGGCACTGCCATCATTGTTGGCTGTTATCAATGGATTGTTTTCGAACCTGGAGGGATCTTTCAGCCATTTGCATGCTGTGCGTGAGTGTGATTCTTCTGTTGATGGAAGTTACCCAATGCCTCTTGTATTTGATCGACTGCCTGAAGTTAATGAAGAAGGATCCCAGTGGACTGATTGTGAACTTACAGATGCAATCAACCTGGTTCATAAAAATTTGGAAAAACTTAACTCATATTTATCAGTTATGGTAGGGAAACATCGGAAGCCAAGGAGGATGACCCTGTACTGGGTCCGGTATACATGTGGTGCAGTTGGGCTCTCTGTTTTCTCTATATGGCTACTACGTCATAGTAGTTTGATGGGAAGTTCGGATATAGAGAATTGGGTTCATGATGCAAAAGAAGCAACGATGAGCTTCTTTAGTGATCATGTTGAGCAACCGCTGCTTTCCATTCGCGATGAGCTTTTTGATACTTTTCGGAAAAGGCACAAGGGTGTTATGGAAACTGAAGAAGTGCAGCTGACGCAAGATTCACTCCACAGAATGCTTCGGAATTTCTGCGAGCAGGCTACACGTGAAAAGGTCCCGGATAATGCATCTGATCAGGAGATGCTCGAGGTTGTTATGAATAGGTATGAAAAAGAACTTGTGCACCCTATTCACAACCTCCTTAGTGGAGAGCTTGCCCGTGGTTTGCTTATTCAGGTCCAAAAGCTTAAACTGGATATAGAAACAGCGATGCTTGAACTGGATCAGATACTCCGTGCAAATGAAATAAACTTTGCCATTCTGGCTGCATTACCTGCATTCTTTCTCAGCATTGTTATGCTTACAGTGCTTCGGACCTGGCTTAAAAAGGATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCGTTGAAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGGACGCAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTGAGAAACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAGGAAGGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTAACGGTTTATGACTGCTTGCTTCCCACTCTGAAGCGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006629 GO:0006643 GO:0006664 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0016999 GO:0017000 GO:0017144 GO:0019374 GO:0019375 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0042743 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050665 GO:0051186 GO:0051188 GO:0071704 GO:0072593 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903409 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NCA2

Protein Analysis

602

Amino Acids

68.89

Weight (kDa)

6.62

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NCA2	PF08637	317 - 523	1e-60	ATP synthase regulation protein NCA2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12290 AT5G12290 AT5G12290 AT5G12290
fragaria_vesca	FvH4_5g07960
malus_domestica	MD03G1163400.v1.1
prunus_persica	Prupe.4G269200_v2.0.a1
pyrus_communis	pycom5153684g00200
rosa_chinensis	RchiOBHm_Chr7g0190441
rosa_laevigata	RLG00000004532
rosa_multiflora	Rmu_sc0002614.1_g000003 Rmu_sc0029194.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264620
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110600 Rh7BG113200 Rh7CG115400 Rh7DG113700
rosa_wichuraiana	Rw0G019860 Rw7G009600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc36I	ACCTGC	2 cut(s)	1429, 1669
AccI	GTMKAC	2 cut(s)	38, 914
AccII	CGCG	2 cut(s)	548, 1074
AciI	CCGC	3 cut(s)	254, 517, 1058
AclI	AACGTT	1 cut(s)	1636
AclWI	GGATC	5 cut(s)	603, 679, 771, 784, 1377
AcsI	RAATTY	3 cut(s)	310, 829, 1171
AcuI	CTGAAG	2 cut(s)	780, 1146
AcvI	CACGTG	1 cut(s)	1193
AfaI	GTAC	4 cut(s)	383, 430, 902, 1643
AfiI	CCNNNNNNNGG	4 cut(s)	40, 903, 904, 1680
AflIII	ACRYGT	2 cut(s)	917, 1190
AgsI	TTSAA	5 cut(s)	1364, 1538, 1544, 1577, 1634
AhdI	GACNNNNNGTC	1 cut(s)	1529
AhlI	ACTAGT	1 cut(s)	1762
AjiI	CACGTC	1 cut(s)	1586
AjnI	CCWGG	3 cut(s)	663, 816, 1463
AjuI	GAANNNNNNNTTGG	2 cut(s)	1593, 1625
AleI	CACNNNNGTG	1 cut(s)	1110
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
Alw21I	GWGCWC	1 cut(s)	1272
Alw26I	GTCTC	4 cut(s)	253, 455, 501, 1516
Alw44I	GTGCAC	1 cut(s)	1268
AlwI	GGATC	5 cut(s)	603, 679, 771, 784, 1377
AlwNI	CAGNNNCTG	1 cut(s)	1604
Ama87I	CYCGRG	2 cut(s)	137, 1232
AoxI	GGCC	1 cut(s)	1718
ApaLI	GTGCAC	1 cut(s)	1268
ApeKI	GCWGC	5 cut(s)	472, 1060, 1135, 1412, 1726
ApoI	RAATTY	3 cut(s)	310, 829, 1171
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	5 cut(s)	404, 907, 1201, 1324, 1461
AsuC2I	CCSGG	1 cut(s)	1205
AsuII	TTCGAA	1 cut(s)	659
AvaI	CYCGRG	2 cut(s)	137, 1232
AvaII	GGWCC	5 cut(s)	404, 907, 1201, 1324, 1461
BaeGI	GKGCMC	1 cut(s)	1272
BaeI	ACNNNNGTAYC	2 cut(s)	1625, 1658
BamHI	GGATCC	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	936
BbrPI	CACGTG	1 cut(s)	1193
Bbv12I	GWGCWC	1 cut(s)	1272
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	5 cut(s)	484, 1047, 1147, 1399, 1738
BccI	CCATC	3 cut(s)	634, 713, 970
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	3 cut(s)	665, 818, 1465
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	2 cut(s)	1042, 1219
BcnI	CCSGG	1 cut(s)	1205
BcoDI	GTCTC	4 cut(s)	253, 455, 501, 1516
BcuI	ACTAGT	1 cut(s)	1762
BfaI	CTAG	4 cut(s)	65, 264, 351, 1763
BfoI	RGCGCY	1 cut(s)	47
BfuAI	ACCTGC	2 cut(s)	1429, 1669
BfuI	GTATCC	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	1409
BglII	AGATCT	2 cut(s)	536, 1699
BisI	GCNGC	5 cut(s)	473, 1061, 1136, 1413, 1727
BlsI	GCNGC	5 cut(s)	474, 1062, 1137, 1414, 1728
Bme1390I	CCNGG	4 cut(s)	665, 818, 1205, 1465
Bme18I	GGWCC	5 cut(s)	404, 907, 1201, 1324, 1461
BmeRI	GACNNNNNGTC	1 cut(s)	1529
BmeT110I	CYCGRG	2 cut(s)	137, 1232
BmgBI	CACGTC	1 cut(s)	1586
BmgT120I	GGNCC	5 cut(s)	404, 907, 1201, 1324, 1461
BmiI	GGNNCC	4 cut(s)	364, 778, 908, 1203
BmrFI	CCNGG	4 cut(s)	665, 818, 1205, 1465
BmrI	ACTGGG	2 cut(s)	775, 913
BmsI	GCATC	8 cut(s)	459, 484, 504, 796, 1000, 1218, 1223, 1347
BmuI	ACTGGG	2 cut(s)	775, 913
BpmI	CTGGAG	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	1473
BpuMI	CCSGG	1 cut(s)	1205
BsaAI	YACGTR	1 cut(s)	1193
BsaJI	CCNNGG	2 cut(s)	884, 1306
BsaWI	WCCGGW	2 cut(s)	16, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 903, 904, 1680
Bse1I	ACTGG	4 cut(s)	781, 908, 1344, 1371
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	665, 818, 1465
BseDI	CCNNGG	2 cut(s)	884, 1306
BseGI	GGATG	2 cut(s)	519, 897
BseLI	CCNNNNNNNGG	4 cut(s)	40, 903, 904, 1680
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	348, 466, 1447
BseNI	ACTGG	4 cut(s)	781, 908, 1344, 1371
BseSI	GKGCMC	1 cut(s)	1272
BseXI	GCAGC	5 cut(s)	484, 1047, 1147, 1399, 1738
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	3 cut(s)	525, 945, 1154
Bsh1236I	CGCG	2 cut(s)	548, 1074
BshFI	GGCC	1 cut(s)	1720
BsiHKAI	GWGCWC	1 cut(s)	1272
BsiHKCI	CYCGRG	2 cut(s)	137, 1232
BsiSI	CCGG	3 cut(s)	17, 910, 1205
BslFI	GGGAC	1 cut(s)	1187
BslI	CCNNNNNNNGG	4 cut(s)	40, 903, 904, 1680
BsmAI	GTCTC	4 cut(s)	253, 455, 501, 1516
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	1187
BsmI	GAATGC	2 cut(s)	1167, 1424
BsnI	GGCC	1 cut(s)	1720
BsoBI	CYCGRG	2 cut(s)	137, 1232
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	936, 1272
Bsp68I	TCGCGA	1 cut(s)	1074
BspACI	CCGC	3 cut(s)	254, 517, 1058
BspANI	GGCC	1 cut(s)	1720
BspCNI	CTCAG	3 cut(s)	349, 465, 1446
BspFNI	CGCG	2 cut(s)	548, 1074
BspHI	TCATGA	2 cut(s)	387, 1006
BspLI	GGNNCC	4 cut(s)	364, 778, 908, 1203
BspMI	ACCTGC	2 cut(s)	1429, 1669
BspPI	GGATC	5 cut(s)	603, 679, 771, 784, 1377
BspT104I	TTCGAA	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	781, 908, 1344, 1371
BssECI	CCNNGG	2 cut(s)	884, 1306
BssNAI	GTATAC	1 cut(s)	915
BssT1I	CCWWGG	1 cut(s)	884
Bst1107I	GTATAC	1 cut(s)	915
Bst2UI	CCWGG	3 cut(s)	665, 818, 1465
Bst4CI	ACNGT	5 cut(s)	169, 1453, 1606, 1750, 1771
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	3 cut(s)	694, 1060, 1421
BstBAI	YACGTR	1 cut(s)	1193
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	5 cut(s)	690, 1181, 1185, 1302, 1784
BstDEI	CTNAG	4 cut(s)	357, 452, 1289, 1433
BstDSI	CCRYGG	1 cut(s)	1306
BstF5I	GGATG	2 cut(s)	519, 897
BstFNI	CGCG	2 cut(s)	548, 1074
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstMAI	GTCTC	4 cut(s)	253, 455, 501, 1516
BstNI	CCWGG	3 cut(s)	665, 818, 1465
BstNSI	RCATGY	2 cut(s)	692, 921
BstSCI	CCNGG	4 cut(s)	663, 816, 1203, 1463
BstSLI	GKGCMC	1 cut(s)	1272
BstUI	CGCG	2 cut(s)	548, 1074
BstV1I	GCAGC	5 cut(s)	484, 1047, 1147, 1399, 1738
BstX2I	RGATCY	5 cut(s)	536, 595, 671, 776, 1699
BstYI	RGATCY	5 cut(s)	536, 595, 671, 776, 1699
BstZ17I	GTATAC	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	1720
BtgI	CCRYGG	1 cut(s)	1306
BtgZI	GCGATG	3 cut(s)	482, 1089, 1370
BtrI	CACGTC	1 cut(s)	1586
BtsCI	GGATG	2 cut(s)	519, 897
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	5 cut(s)	460, 620, 788, 1458, 1755
BtuMI	TCGCGA	1 cut(s)	1074
BveI	ACCTGC	2 cut(s)	1429, 1669
Cac8I	GCNNGC	5 cut(s)	690, 1181, 1185, 1302, 1784
CaiI	CAGNNNCTG	1 cut(s)	1604
CciI	TCATGA	2 cut(s)	387, 1006
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	5 cut(s)	404, 907, 1201, 1324, 1461
CseI	GACGC	3 cut(s)	537, 1150, 1604
CsiI	ACCWGGT	1 cut(s)	816
Csp6I	GTAC	4 cut(s)	382, 429, 901, 1642
CviAII	CATG	8 cut(s)	272, 317, 388, 502, 689, 918, 1007, 1046
CviQI	GTAC	4 cut(s)	382, 429, 901, 1642
DdeI	CTNAG	4 cut(s)	357, 452, 1289, 1433
DrdI	GACNNNNNNGTC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	1529
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	1529
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	936
Eco47I	GGWCC	5 cut(s)	404, 907, 1201, 1324, 1461
Eco57I	CTGAAG	2 cut(s)	780, 1146
Eco72I	CACGTG	1 cut(s)	1193
Eco88I	CYCGRG	2 cut(s)	137, 1232
EcoO109I	RGGNCCY	1 cut(s)	1201
EcoRII	CCWGG	3 cut(s)	663, 816, 1463
EcoT14I	CCWWGG	1 cut(s)	884
EcoT22I	ATGCAT	1 cut(s)	1216
EcoT38I	GRGCYC	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	884
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	8 cut(s)	275, 320, 391, 505, 692, 921, 1010, 1049
FaqI	GGGAC	1 cut(s)	1187
FatI	CATG	8 cut(s)	271, 316, 387, 501, 688, 917, 1006, 1045
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	2 cut(s)	1042, 1219
FblI	GTMKAC	2 cut(s)	38, 914
Fnu4HI	GCNGC	5 cut(s)	473, 1061, 1136, 1413, 1727
FokI	GGATG	2 cut(s)	526, 904
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	5 cut(s)	473, 1061, 1136, 1413, 1727
FspBI	CTAG	4 cut(s)	65, 264, 351, 1763
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	5 cut(s)	473, 1061, 1136, 1413, 1727
GsaI	CCCAGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	686
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	1720
HapII	CCGG	3 cut(s)	17, 910, 1205
HgaI	GACGC	3 cut(s)	537, 1150, 1604
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	8 cut(s)	275, 320, 391, 505, 692, 921, 1010, 1049
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	3 cut(s)	22, 30, 39
HindII	GTYRAC	3 cut(s)	22, 30, 39
HindIII	AAGCTT	1 cut(s)	1331
HinfI	GANTC	8 cut(s)	5, 26, 94, 268, 461, 607, 707, 1148
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	3 cut(s)	17, 910, 1205
Hpy166II	GTNNAC	8 cut(s)	22, 30, 39, 421, 786, 797, 915, 1270
Hpy8I	GTNNAC	8 cut(s)	22, 30, 39, 421, 786, 797, 915, 1270
Hpy99I	CGWCG	3 cut(s)	40, 43, 1679
HpyAV	CCTTC	2 cut(s)	767, 1710
HpyCH4III	ACNGT	5 cut(s)	169, 1453, 1606, 1750, 1771
HpyCH4IV	ACGT	6 cut(s)	300, 586, 961, 1192, 1585, 1636
HpyF3I	CTNAG	4 cut(s)	357, 452, 1289, 1433
HpySE526I	ACGT	6 cut(s)	300, 586, 961, 1192, 1585, 1636
Hsp92II	CATG	8 cut(s)	275, 320, 391, 505, 692, 921, 1010, 1049
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	2 cut(s)	1042, 1219
KspAI	GTTAAC	1 cut(s)	22
Lsp1109I	GCAGC	5 cut(s)	484, 1047, 1147, 1399, 1738
LweI	GCATC	8 cut(s)	459, 484, 504, 796, 1000, 1218, 1223, 1347
MabI	ACCWGGT	1 cut(s)	816
MaeI	CTAG	4 cut(s)	65, 264, 351, 1763
MaeII	ACGT	6 cut(s)	300, 586, 961, 1192, 1585, 1636
MaeIII	GTNAC	4 cut(s)	83, 725, 1750, 1765
MboII	GAAGA	8 cut(s)	191, 219, 483, 616, 702, 782, 1139, 1512
MflI	RGATCY	5 cut(s)	536, 595, 671, 776, 1699
MhlI	GDGCHC	2 cut(s)	936, 1272
MluCI	AATT	9 cut(s)	234, 288, 310, 829, 997, 1171, 1503, 1539, 1551
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	261, 558
Mph1103I	ATGCAT	1 cut(s)	1216
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	6 cut(s)	21, 533, 765, 843, 1335, 1470
MslI	CAYNNNNRTG	3 cut(s)	687, 1110, 1442
MspA1I	CMGCKG	2 cut(s)	1060, 1138
MspI	CCGG	3 cut(s)	17, 910, 1205
MspR9I	CCNGG	4 cut(s)	665, 818, 1205, 1465
Mva1269I	GAATGC	2 cut(s)	1167, 1424
MvaI	CCWGG	3 cut(s)	665, 818, 1465
MvnI	CGCG	2 cut(s)	548, 1074
NciI	CCSGG	1 cut(s)	1205
NlaIII	CATG	8 cut(s)	275, 320, 391, 505, 692, 921, 1010, 1049
NlaIV	GGNNCC	4 cut(s)	364, 778, 908, 1203
NmuCI	GTSAC	1 cut(s)	1750
NruI	TCGCGA	1 cut(s)	1074
NsiI	ATGCAT	1 cut(s)	1216
NspI	RCATGY	2 cut(s)	692, 921
NspV	TTCGAA	1 cut(s)	659
OliI	CACNNNNGTG	1 cut(s)	1110
PaeI	GCATGC	1 cut(s)	692
PaeR7I	CTCGAG	1 cut(s)	1232
PagI	TCATGA	2 cut(s)	387, 1006
PciI	ACATGT	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	1 cut(s)	1642
PctI	GAATGC	2 cut(s)	1167, 1424
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	7 cut(s)	5, 94, 268, 461, 607, 707, 1148
PfoI	TCCNGGA	1 cut(s)	1203
PkrI	GCNGC	5 cut(s)	474, 1062, 1137, 1414, 1728
PleI	GAGTC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	1193
PmlI	CACGTG	1 cut(s)	1193
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	1193
PpuMI	RGGWCCY	1 cut(s)	1201
PscI	ACATGT	1 cut(s)	917
Psp1406I	AACGTT	1 cut(s)	1636
Psp5II	RGGWCCY	1 cut(s)	1201
Psp6I	CCWGG	3 cut(s)	663, 816, 1463
PspCI	CACGTG	1 cut(s)	1193
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	3 cut(s)	663, 816, 1463
PspN4I	GGNNCC	4 cut(s)	364, 778, 908, 1203
PspPI	GGNCC	5 cut(s)	404, 907, 1201, 1324, 1461
PspPPI	RGGWCCY	1 cut(s)	1201
PspXI	VCTCGAGB	1 cut(s)	1232
PstNI	CAGNNNCTG	1 cut(s)	1604
PsuI	RGATCY	5 cut(s)	536, 595, 671, 776, 1699
PvuII	CAGCTG	1 cut(s)	1138
RruI	TCGCGA	1 cut(s)	1074
RsaI	GTAC	4 cut(s)	383, 430, 902, 1643
RsaNI	GTAC	4 cut(s)	382, 429, 901, 1642
RseI	CAYNNNNRTG	3 cut(s)	687, 1110, 1442
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	6 cut(s)	21, 533, 765, 843, 1335, 1470
SatI	GCNGC	5 cut(s)	473, 1061, 1136, 1413, 1727
Sau96I	GGNCC	5 cut(s)	404, 907, 1201, 1324, 1461
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	4 cut(s)	665, 818, 1205, 1465
SduI	GDGCHC	2 cut(s)	936, 1272
SexAI	ACCWGGT	1 cut(s)	816
SfaNI	GCATC	8 cut(s)	459, 484, 504, 796, 1000, 1218, 1223, 1347
Sfr274I	CTCGAG	1 cut(s)	1232
SfuI	TTCGAA	1 cut(s)	659
SgrDI	CGTCGACG	1 cut(s)	37
SinI	GGWCC	5 cut(s)	404, 907, 1201, 1324, 1461
SlaI	CTCGAG	1 cut(s)	1232
SmiMI	CAYNNNNRTG	3 cut(s)	687, 1110, 1442
SmlI	CTYRAG	2 cut(s)	1232, 1488
SmoI	CTYRAG	2 cut(s)	1232, 1488
SpeI	ACTAGT	1 cut(s)	1762
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	9 cut(s)	234, 288, 310, 829, 997, 1171, 1503, 1539, 1551
SsiI	CCGC	3 cut(s)	254, 517, 1058
SspMI	CTAG	4 cut(s)	65, 264, 351, 1763
StyD4I	CCNGG	4 cut(s)	663, 816, 1203, 1463
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	5 cut(s)	169, 1453, 1606, 1750, 1771
TaiI	ACGT	6 cut(s)	303, 589, 964, 1195, 1588, 1639
TaqI	TCGA	9 cut(s)	38, 80, 173, 308, 373, 659, 751, 1233, 1707
TasI	AATT	9 cut(s)	234, 288, 310, 829, 997, 1171, 1503, 1539, 1551
TatI	WGTACW	1 cut(s)	900
TfiI	GAWTC	7 cut(s)	5, 94, 268, 461, 607, 707, 1148
Tru1I	TTAA	6 cut(s)	21, 533, 765, 843, 1335, 1470
Tru9I	TTAA	6 cut(s)	21, 533, 765, 843, 1335, 1470
TscAI	CASTG	5 cut(s)	460, 627, 788, 1458, 1755
TseFI	GTSAC	1 cut(s)	1750
TseI	GCWGC	5 cut(s)	472, 1060, 1135, 1412, 1726
Tsp45I	GTSAC	1 cut(s)	1750
TspDTI	ATGAA	9 cut(s)	180, 260, 376, 783, 812, 995, 1259, 1269, 1404
TspGWI	ACGGA	1 cut(s)	1370
TspRI	CASTG	5 cut(s)	460, 627, 788, 1458, 1755
VneI	GTGCAC	1 cut(s)	1268
VpaK11BI	GGWCC	5 cut(s)	404, 907, 1201, 1324, 1461
XapI	RAATTY	3 cut(s)	310, 829, 1171
XbaI	TCTAGA	1 cut(s)	350
XceI	RCATGY	2 cut(s)	692, 921
XhoI	CTCGAG	1 cut(s)	1232
XmiI	GTMKAC	2 cut(s)	38, 914
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	4 cut(s)	65, 264, 351, 1763
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.