Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0011465

Physical Location & Seq

Genomic Coordinates Forward (+)

351076 .. 351976

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom5153684g00200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCGGCAGGTTGACTCGTCTGTTGAGGGCAGCTATTCAGTTCCACTACTATTTGAGAAACTCCCGGAAATAAATCAAGAAGGATCCCAGTGGACAGATTGTGAAATTAAGGATGCTATCAATTTGGTTTATCAGAATCTGCACAAGCTTGATTCTTACTTGTCTTCTATTGTTTGCAAACATCGTAAACCAAGGAAGGTAACACAATATTGGATCCGTTATACATGTGGTGCGGTTGGCCTCTCAGTTTGTTCTGTGTGGCTTATAGGACATAGTAGTCTGATGGGAAGTCCAGACATTGACAATTGGGTTCGTGAAGCGAGGGATTCAACAGTCAGCTTCTTTAGCGATCATGTGGAGCAACCGGTATATTTATTCAACTTATATCGTGCTTTAATTTTCTACTGCTCTAAAAAATATTTGTTATGCTATTTGACTGAAAGTGAAGGAAGCTATGGTGCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NCA2

Protein Analysis

156

Amino Acids

17.84

Weight (kDa)

6.06

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12290 AT5G12290 AT5G12290 AT5G12290
fragaria_vesca	FvH4_5g07960
malus_domestica	MD03G1163400.v1.1
prunus_persica	Prupe.4G269200_v2.0.a1
pyrus_communis	pycom5153684g00200
rosa_chinensis	RchiOBHm_Chr7g0190441
rosa_laevigata	RLG00000004532
rosa_multiflora	Rmu_sc0002614.1_g000003 Rmu_sc0029194.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264620
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110600 Rh7BG113200 Rh7CG115400 Rh7DG113700
rosa_wichuraiana	Rw0G019860 Rw7G009600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	2 cut(s)	4, 233
AclWI	GGATC	4 cut(s)	78, 91, 208, 221
AflIII	ACRYGT	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	330, 379
AluBI	AGCT	4 cut(s)	33, 148, 339, 453
AluI	AGCT	4 cut(s)	33, 148, 339, 453
AlwI	GGATC	4 cut(s)	78, 91, 208, 221
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	65
BamHI	GGATCC	2 cut(s)	83, 213
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	5, 31
BlsI	GCNGC	2 cut(s)	6, 32
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	85, 215, 460
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	65, 365
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	83, 213, 349
BspACI	CCGC	2 cut(s)	4, 233
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	85, 215, 460
BspPI	GGATC	4 cut(s)	78, 91, 208, 221
BspT107I	GGYRCC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	83, 213, 349
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	86, 216, 352
BstMBI	GATC	3 cut(s)	83, 213, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	83, 213
BstYI	RGATCY	2 cut(s)	83, 213
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	364
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	2 cut(s)	225, 353
CviJI	RGCY	6 cut(s)	33, 148, 240, 262, 339, 453
CviKI_1	RGCY	6 cut(s)	33, 148, 240, 262, 339, 453
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	85, 215, 351
DpnII	GATC	3 cut(s)	83, 213, 349
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	2 cut(s)	228, 356
FatI	CATG	2 cut(s)	224, 352
Fnu4HI	GCNGC	2 cut(s)	5, 31
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	5, 31
GluI	GCNGC	2 cut(s)	5, 31
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	65, 365
Hin1II	CATG	2 cut(s)	228, 356
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	14, 136, 152, 326
HpaII	CCGG	2 cut(s)	65, 365
Hpy166II	GTNNAC	3 cut(s)	13, 93, 188
Hpy188I	TCNGA	2 cut(s)	135, 282
Hpy188III	TCNNGA	3 cut(s)	77, 293, 314
Hpy8I	GTNNAC	3 cut(s)	13, 93, 188
HpyAV	CCTTC	3 cut(s)	74, 190, 440
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	142, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	228, 356
Kzo9I	GATC	3 cut(s)	83, 213, 349
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	78, 101, 306, 378
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	85, 215, 351
MboI	GATC	3 cut(s)	83, 213, 349
MboII	GAAGA	1 cut(s)	156
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	2 cut(s)	83, 213
MluCI	AATT	4 cut(s)	105, 121, 304, 396
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	3 cut(s)	19, 251, 315
MseI	TTAA	2 cut(s)	108, 395
MspI	CCGG	2 cut(s)	65, 365
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	3 cut(s)	83, 213, 349
NlaIII	CATG	2 cut(s)	228, 356
NlaIV	GGNNCC	3 cut(s)	85, 215, 460
NspI	RCATGY	1 cut(s)	228
PciI	ACATGT	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	136, 152, 326
PfoI	TCCNGGA	1 cut(s)	63
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	6, 32
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	85, 215, 460
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	83, 213
SaqAI	TTAA	2 cut(s)	108, 395
SatI	GCNGC	2 cut(s)	5, 31
Sau3AI	GATC	3 cut(s)	83, 213, 349
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	6 cut(s)	12, 35, 150, 201, 341, 455
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	4 cut(s)	105, 121, 304, 396
SsiI	CCGC	2 cut(s)	4, 233
SspI	AATATT	2 cut(s)	209, 419
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	334
TasI	AATT	4 cut(s)	105, 121, 304, 396
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	136, 152, 326
Tru1I	TTAA	2 cut(s)	108, 395
Tru9I	TTAA	2 cut(s)	108, 395
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	95
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.