Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

62033602 .. 62045986

Gene Structure 12385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0504700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGCATGTAGGTAAACCCTCGGCGATCATTGTTGTGTGGCTCGCACTCTTTCAAGGACTCCTCCTCTGTGTAAATGCTGATTTGAATTACAAGGATGCGCTAACCAAGTCCATCATCTTCCTTGAGGCACAAAGGTCAGGGAAGCTCCCTCCTAATCACAGACCAAAATGGAGAGGAGACTCCGCCCTCGACGATGGAAAACTAGAAAATGTGGACCTTTCTGGGGGATATTATGATGCCGGCGACAATGTCAAGTACGGACTTCCGATGGCTTTTACAATCACAACCCTGTCGTGGGCCGCCATCCAATACAATTCGGAGCTAAAGGCTACGGGAGAATTGCAAAATGTCATGGACGGCATTAAATGGGGAACCGATTACTTTTTCAAAGCTATTTCCGAACACAAGTTGTACGTTCAAGTAGGAGACCCCAATCTAGACCATCAATGTTGGGTTCGACCAGAAGAGATGAGGACACCAAGAACTGTGTATAGGATCGATGAGAACACTCCCGGATCAGAAATTGCAGGTGAAACCTCAGCTGCAATGGCTGCTGCTTCCATCGCGTTCAGATCCATTGATAAGGTCTATGCTCGTCGTCTCCTCAACAAAGCCAAGCTGCTCTTCCAAATGGCCAAAACTCATAAAGGAACTTACGACGGAGAGTGTCCTTTCTACTGCTCCTTCTCCGGCTACAATGACGAGCTATTGTGGGCAGCGACATGGTTGTATATGGCCACCAAAAGACCAGAGTACTTAACTTACATACACGAAGAGGCCATTCCCGCTACCGTGGCTGAGTTTAGCTGGGATCTTAAGTATGCTGGAGCTCAAGTCCTTGTCTCCAAGCTGTTCTTTGAGGGCGAAAAGGAACTAGAAAACTACAAGAACCAAGCAGACAGCTACATTTGCTCGAACCTCCCCGAGAGTCCATACATGCAAGTCCACACCACTCCGGCCGGTATGGTCCACCTCAGAGACGGGGCCAACTCTCAATATGTCACCGGGACCGCCATGTTGTTCAGTGTGTACAGCGACATTCTAGCCGAACACAACCAAAAGGTCATATGTTCCGATAAACAGTTCGATAGCACCCACCTTATGGCCTTCGCTAAGAAACAAATCGACCTATTGCTAGGCAACAACCCTAACGGCAGATCCTATATGGTTGGCTTTGGCAGCAACCCCCCGACACAGGCGCACCACCGGGGCGCGTCGATTCCTGTGGGGGCTGATACCAGCCAGGTCAGCTGCCCCATGAGCTTCGTGTACTGGTACAACAAGGATACACCAAACCCTAACGAGCTGACCGGTGCCATCTTGGGAGGGCCTGACAAGGACGATAAGTTCAACGACAAGCGGTGGGAGTCTGCGATGACTGAGCCATGCACCTACGTCAATTCACTAGCGGTTGGGGTCTTGGCAAAGCTCGCAACCAAGTCTATTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

483

Amino Acids

53.81

Weight (kDa)

5.87

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	30 - 474	2.4e-150	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	1313
AccB7I	CCANNNNNTGG	1 cut(s)	1102
AccII	CGCG	2 cut(s)	566, 1214
AciI	CCGC	6 cut(s)	183, 300, 786, 1011, 1360, 1409
AclWI	GGATC	5 cut(s)	503, 523, 567, 819, 1152
AcoI	YGGCCR	3 cut(s)	633, 735, 957
AfaI	GTAC	6 cut(s)	257, 413, 755, 1031, 1271, 1277
AfiI	CCNNNNNNNGG	5 cut(s)	223, 294, 295, 1102, 1195
AflII	CTTAAG	1 cut(s)	815
AgeI	ACCGGT	1 cut(s)	1310
AgsI	TTSAA	5 cut(s)	53, 85, 388, 419, 1351
AjnI	CCWGG	1 cut(s)	1242
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AloI	GAACNNNNNNTCC	2 cut(s)	1331, 1363
Alw21I	GWGCWC	1 cut(s)	832
Alw26I	GTCTC	5 cut(s)	171, 420, 605, 847, 972
AlwI	GGATC	5 cut(s)	503, 523, 567, 819, 1152
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	8 cut(s)	297, 633, 735, 777, 957, 984, 1104, 1328
ApeKI	GCWGC	7 cut(s)	542, 551, 554, 619, 716, 1179, 1251
AsiGI	ACCGGT	1 cut(s)	1310
AspLEI	GCGC	3 cut(s)	100, 1201, 1214
AspS9I	GGNCC	6 cut(s)	214, 297, 967, 984, 1008, 1328
AsuC2I	CCSGG	3 cut(s)	513, 1006, 1208
AsuHPI	GGTGA	2 cut(s)	542, 994
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	3 cut(s)	214, 967, 1008
BalI	TGGCCA	2 cut(s)	635, 737
BanI	GGYRCC	1 cut(s)	1313
BanII	GRGCYC	1 cut(s)	832
Bbv12I	GWGCWC	1 cut(s)	832
BbvCI	CCTCAGC	1 cut(s)	538
BbvI	GCAGC	7 cut(s)	529, 538, 541, 606, 728, 1191, 1238
BccI	CCATC	7 cut(s)	119, 188, 262, 311, 450, 569, 1325
BceAI	ACGGC	2 cut(s)	373, 1168
BciT130I	CCWGG	1 cut(s)	1244
BciVI	GTATCC	1 cut(s)	1279
BcnI	CCSGG	3 cut(s)	513, 1006, 1208
BcoDI	GTCTC	5 cut(s)	171, 420, 605, 847, 972
BfaI	CTAG	6 cut(s)	203, 437, 875, 1043, 1136, 1406
BfrI	CTTAAG	1 cut(s)	815
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	1279
BisI	GCNGC	8 cut(s)	300, 543, 552, 555, 620, 717, 1180, 1252
BlsI	GCNGC	8 cut(s)	301, 544, 553, 556, 621, 718, 1181, 1253
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	4 cut(s)	513, 1006, 1208, 1244
Bme18I	GGWCC	3 cut(s)	214, 967, 1008
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	6 cut(s)	214, 297, 967, 984, 1008, 1328
BmiI	GGNNCC	4 cut(s)	373, 985, 1009, 1315
BmrFI	CCNGG	4 cut(s)	513, 1006, 1208, 1244
BmsI	GCATC	2 cut(s)	85, 226
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	2 cut(s)	143, 816
BpuMI	CCSGG	3 cut(s)	513, 1006, 1208
Bsa29I	ATCGAT	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	18, 792, 1207
BsaWI	WCCGGW	1 cut(s)	1310
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	5 cut(s)	223, 294, 295, 1102, 1195
Bse118I	RCCGGY	3 cut(s)	239, 959, 1310
Bse1I	ACTGG	1 cut(s)	1277
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	1244
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	18, 792, 1207
BseGI	GGATG	2 cut(s)	100, 303
BseLI	CCNNNNNNNGG	5 cut(s)	223, 294, 295, 1102, 1195
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	4 cut(s)	552, 789, 988, 1371
BseNI	ACTGG	1 cut(s)	1277
BseRI	GAGGAG	4 cut(s)	50, 53, 189, 593
BseX3I	CGGCCG	1 cut(s)	957
BseXI	GCAGC	7 cut(s)	529, 538, 541, 606, 728, 1191, 1238
BseYI	CCCAGC	1 cut(s)	807
Bsh1236I	CGCG	2 cut(s)	566, 1214
Bsh1285I	CGRYCG	1 cut(s)	960
BshFI	GGCC	8 cut(s)	299, 635, 737, 779, 959, 986, 1106, 1330
BshNI	GGYRCC	1 cut(s)	1313
BshTI	ACCGGT	1 cut(s)	1310
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	832
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	8 cut(s)	240, 513, 690, 956, 960, 1005, 1207, 1311
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	5 cut(s)	223, 294, 295, 1102, 1195
BsmAI	GTCTC	5 cut(s)	171, 420, 605, 847, 972
BsmBI	CGTCTC	2 cut(s)	605, 972
BsmFI	GGGAC	1 cut(s)	1021
BsnI	GGCC	8 cut(s)	299, 635, 737, 779, 959, 986, 1106, 1330
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	923
Bsp1286I	GDGCHC	1 cut(s)	832
Bsp1407I	TGTACA	1 cut(s)	1029
Bsp143I	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
BspACI	CCGC	6 cut(s)	183, 300, 786, 1011, 1360, 1409
BspANI	GGCC	8 cut(s)	299, 635, 737, 779, 959, 986, 1106, 1330
BspCNI	CTCAG	4 cut(s)	551, 790, 987, 1372
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	2 cut(s)	566, 1214
BspLI	GGNNCC	4 cut(s)	373, 985, 1009, 1315
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	5 cut(s)	503, 523, 567, 819, 1152
BspQI	GCTCTTC	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	1313
BspTI	CTTAAG	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	3 cut(s)	239, 959, 1310
BsrGI	TGTACA	1 cut(s)	1029
BsrI	ACTGG	1 cut(s)	1277
BssAI	RCCGGY	3 cut(s)	239, 959, 1310
BssECI	CCNNGG	3 cut(s)	18, 792, 1207
BssMI	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
Bst2UI	CCWGG	1 cut(s)	1244
Bst4CI	ACNGT	3 cut(s)	487, 793, 1083
Bst6I	CTCTTC	3 cut(s)	459, 629, 768
BstAFI	CTTAAG	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	1029
BstC8I	GCNNGC	3 cut(s)	42, 241, 1431
BstDEI	CTNAG	5 cut(s)	538, 798, 974, 1113, 1380
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	100, 303
BstFNI	CGCG	2 cut(s)	566, 1214
BstHHI	GCGC	3 cut(s)	100, 1201, 1214
BstKTI	GATC	6 cut(s)	27, 498, 518, 575, 814, 1160
BstMAI	GTCTC	5 cut(s)	171, 420, 605, 847, 972
BstMBI	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
BstMCI	CGRYCG	1 cut(s)	960
BstNI	CCWGG	1 cut(s)	1244
BstNSI	RCATGY	2 cut(s)	8, 940
BstSCI	CCNGG	4 cut(s)	511, 1004, 1206, 1242
BstUI	CGCG	2 cut(s)	566, 1214
BstV1I	GCAGC	7 cut(s)	529, 538, 541, 606, 728, 1191, 1238
BstX2I	RGATCY	3 cut(s)	572, 811, 1157
BstYI	RGATCY	3 cut(s)	572, 811, 1157
BstZI	CGGCCG	1 cut(s)	957
Bsu15I	ATCGAT	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	1279
BsuRI	GGCC	8 cut(s)	299, 635, 737, 779, 959, 986, 1106, 1330
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	2 cut(s)	547, 1388
BtsCI	GGATG	2 cut(s)	100, 303
BtsIMutI	CAGTG	1 cut(s)	1030
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	42, 241, 1431
CfoI	GCGC	3 cut(s)	100, 1201, 1214
Cfr10I	RCCGGY	3 cut(s)	239, 959, 1310
Cfr13I	GGNCC	6 cut(s)	214, 297, 967, 984, 1008, 1328
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	1203
Csp6I	GTAC	6 cut(s)	256, 412, 754, 1030, 1270, 1276
CspAI	ACCGGT	1 cut(s)	1310
CviAII	CATG	7 cut(s)	5, 352, 723, 937, 1015, 1258, 1386
CviQI	GTAC	6 cut(s)	256, 412, 754, 1030, 1270, 1276
DdeI	CTNAG	5 cut(s)	538, 798, 974, 1113, 1380
DpnI	GATC	6 cut(s)	26, 497, 517, 574, 813, 1159
DpnII	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
EaeI	YGGCCR	3 cut(s)	633, 735, 957
EagI	CGGCCG	1 cut(s)	957
Eam1104I	CTCTTC	3 cut(s)	459, 629, 768
EarI	CTCTTC	3 cut(s)	459, 629, 768
EciI	GGCGGA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	830
EclXI	CGGCCG	1 cut(s)	957
Eco24I	GRGCYC	1 cut(s)	832
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	3 cut(s)	214, 967, 1008
Eco52I	CGGCCG	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	923
EcoICRI	GAGCTC	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	1328
EcoRII	CCWGG	1 cut(s)	1242
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	832
Esp3I	CGTCTC	2 cut(s)	605, 972
FaeI	CATG	7 cut(s)	8, 355, 726, 940, 1018, 1261, 1389
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 839, 871
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	7 cut(s)	4, 351, 722, 936, 1014, 1257, 1385
FauI	CCCGC	1 cut(s)	793
FauNDI	CATATG	1 cut(s)	1067
Fnu4HI	GCNGC	8 cut(s)	300, 543, 552, 555, 620, 717, 1180, 1252
FokI	GGATG	2 cut(s)	107, 290
FriOI	GRGCYC	1 cut(s)	832
Fsp4HI	GCNGC	8 cut(s)	300, 543, 552, 555, 620, 717, 1180, 1252
FspBI	CTAG	6 cut(s)	203, 437, 875, 1043, 1136, 1406
GlaI	GCGC	3 cut(s)	99, 1200, 1213
GluI	GCNGC	8 cut(s)	300, 543, 552, 555, 620, 717, 1180, 1252
GsaI	CCCAGC	1 cut(s)	811
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	8 cut(s)	299, 635, 737, 779, 959, 986, 1106, 1330
HapII	CCGG	8 cut(s)	240, 513, 690, 956, 960, 1005, 1207, 1311
HgaI	GACGC	1 cut(s)	1203
HhaI	GCGC	3 cut(s)	100, 1201, 1214
Hin1II	CATG	7 cut(s)	8, 355, 726, 940, 1018, 1261, 1389
Hin6I	GCGC	3 cut(s)	98, 1199, 1212
HinP1I	GCGC	3 cut(s)	98, 1199, 1212
HinfI	GANTC	5 cut(s)	57, 179, 928, 1219, 1367
HpaII	CCGG	8 cut(s)	240, 513, 690, 956, 960, 1005, 1207, 1311
HphI	GGTGA	2 cut(s)	542, 994
Hpy166II	GTNNAC	6 cut(s)	14, 214, 946, 970, 1030, 1270
Hpy188I	TCNGA	7 cut(s)	267, 319, 400, 520, 572, 977, 1075
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	6 cut(s)	14, 214, 946, 970, 1030, 1270
Hpy99I	CGWCG	4 cut(s)	194, 600, 662, 1219
HpyAV	CCTTC	2 cut(s)	694, 1117
HpyCH4III	ACNGT	3 cut(s)	487, 793, 1083
HpyCH4IV	ACGT	2 cut(s)	414, 1395
HpyCH4V	TGCA	6 cut(s)	4, 343, 527, 545, 940, 1389
HpyF3I	CTNAG	5 cut(s)	538, 798, 974, 1113, 1380
HpySE526I	ACGT	2 cut(s)	414, 1395
Hsp92II	CATG	7 cut(s)	8, 355, 726, 940, 1018, 1261, 1389
HspAI	GCGC	3 cut(s)	98, 1199, 1212
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	4 cut(s)	150, 319, 686, 827
Lsp1109I	GCAGC	7 cut(s)	529, 538, 541, 606, 728, 1191, 1238
LweI	GCATC	2 cut(s)	85, 226
MaeI	CTAG	6 cut(s)	203, 437, 875, 1043, 1136, 1406
MaeII	ACGT	2 cut(s)	414, 1395
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	6 cut(s)	26, 497, 517, 574, 813, 1159
MboI	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
MboII	GAAGA	4 cut(s)	109, 476, 616, 785
MflI	RGATCY	3 cut(s)	572, 811, 1157
MhlI	GDGCHC	1 cut(s)	832
MlsI	TGGCCA	2 cut(s)	635, 737
MluCI	AATT	5 cut(s)	85, 313, 338, 522, 1399
MluNI	TGGCCA	2 cut(s)	635, 737
MlyI	GAGTC	4 cut(s)	51, 173, 937, 1376
Mox20I	TGGCCA	2 cut(s)	635, 737
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	2 cut(s)	635, 737
MseI	TTAA	3 cut(s)	363, 758, 816
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	2 cut(s)	635, 737
MspA1I	CMGCKG	2 cut(s)	542, 1251
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	8 cut(s)	240, 513, 690, 956, 960, 1005, 1207, 1311
MspR9I	CCNGG	4 cut(s)	513, 1006, 1208, 1244
MvaI	CCWGG	1 cut(s)	1244
MvnI	CGCG	2 cut(s)	566, 1214
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	3 cut(s)	513, 1006, 1208
NdeI	CATATG	1 cut(s)	1067
NdeII	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	7 cut(s)	8, 355, 726, 940, 1018, 1261, 1389
NlaIV	GGNNCC	4 cut(s)	373, 985, 1009, 1315
NmuCI	GTSAC	1 cut(s)	1000
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 940
PaqCI	CACCTGC	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	629
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	1219
PflFI	GACNNNGTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	1102
PfoI	TCCNGGA	1 cut(s)	511
PinAI	ACCGGT	1 cut(s)	1310
PkrI	GCNGC	8 cut(s)	301, 544, 553, 556, 621, 718, 1181, 1253
PleI	GAGTC	4 cut(s)	51, 173, 936, 1375
PpsI	GAGTC	4 cut(s)	51, 173, 936, 1375
Psp124BI	GAGCTC	1 cut(s)	832
Psp6I	CCWGG	1 cut(s)	1242
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	1242
PspN4I	GGNNCC	4 cut(s)	373, 985, 1009, 1315
PspPI	GGNCC	6 cut(s)	214, 297, 967, 984, 1008, 1328
PsuI	RGATCY	3 cut(s)	572, 811, 1157
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	2 cut(s)	542, 1251
RsaI	GTAC	6 cut(s)	257, 413, 755, 1031, 1271, 1277
RsaNI	GTAC	6 cut(s)	256, 412, 754, 1030, 1270, 1276
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	832
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	363, 758, 816
SatI	GCNGC	8 cut(s)	300, 543, 552, 555, 620, 717, 1180, 1252
Sau3AI	GATC	6 cut(s)	24, 495, 515, 572, 811, 1157
Sau96I	GGNCC	6 cut(s)	214, 297, 967, 984, 1008, 1328
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	4 cut(s)	51, 173, 937, 1376
ScrFI	CCNGG	4 cut(s)	513, 1006, 1208, 1244
SduI	GDGCHC	1 cut(s)	832
SfaNI	GCATC	2 cut(s)	85, 226
SinI	GGWCC	3 cut(s)	214, 967, 1008
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	122, 815, 831
SmoI	CTYRAG	3 cut(s)	122, 815, 831
Sse9I	AATT	5 cut(s)	85, 313, 338, 522, 1399
SsiI	CCGC	6 cut(s)	183, 300, 786, 1011, 1360, 1409
SspMI	CTAG	6 cut(s)	203, 437, 875, 1043, 1136, 1406
SstI	GAGCTC	1 cut(s)	832
StyD4I	CCNGG	4 cut(s)	511, 1004, 1206, 1242
TaaI	ACNGT	3 cut(s)	487, 793, 1083
TaiI	ACGT	2 cut(s)	417, 1398
TaqI	TCGA	7 cut(s)	189, 457, 498, 914, 1086, 1125, 1217
TasI	AATT	5 cut(s)	85, 313, 338, 522, 1399
TatI	WGTACW	3 cut(s)	753, 1029, 1269
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	1219
Tru1I	TTAA	3 cut(s)	363, 758, 816
Tru9I	TTAA	3 cut(s)	363, 758, 816
TscAI	CASTG	1 cut(s)	1030
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	7 cut(s)	542, 551, 554, 619, 716, 1179, 1251
Tsp45I	GTSAC	1 cut(s)	1000
TspGWI	ACGGA	2 cut(s)	273, 675
TspRI	CASTG	1 cut(s)	1030
Tth111I	GACNNNGTC	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	1102
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	3 cut(s)	214, 967, 1008
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	2 cut(s)	8, 940
XspI	CTAG	6 cut(s)	203, 437, 875, 1043, 1136, 1406
ZrmI	AGTACT	1 cut(s)	755
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.