Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

18173693 .. 18174229

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACAAGGCGCAGCAGCAGCATTCTCCCAAGTCGACTTTGGCTAAATTATGCCGTAAGCTGTCTTCAAGAAAGGCAGAGAGGCGCACTCTGTCGAGTCCAACGAGCAGCTCATGCAGCAGCGAGCTGGAGAAGGTGTTTTATTACTTTGATGAGAACGGTGACGGTAAGATATCCCCGGCTGAGCTTCAGACATGTGTGAGGACTGTCGGAGGGGAGCTGTCCGAGGAGGAAGCGCAAGCGGCGGTGGAGGCTTCGGATATGGACGGGGATGGGATGCTGGGGTTTGAGGAGTTCCAGAAGTTGATGGAGGCCTCAAATGGAGACGAGGAGAACAAGAGCAAGGAGCTGAGAGATGCCTTTGGGATGTATGAAATGGAGGGCTCAGGCTGCATAACACCAGCAAGCTTAAAGAGGATGCTGGGCAGGTTGGGCGAGTCCCGCTCCACCGAGGATTGCAAGAGCATGATTCGCATGTTCGACCTCAACGGAGATGGAGTTCTGAACTTCGATGAGTTCAGAATCATGATGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

179

Amino Acids

19.75

Weight (kDa)

4.75

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	41 - 103	1.9e-13	EF-hand domain pair
EF-hand_5	PF13202	43 - 67	6.1e-07	EF hand
EF-hand_8	PF13833	55 - 104	2.1e-10	EF-hand domain pair
EF-hand_7	PF13499	115 - 177	4.9e-11	EF-hand domain pair
EF-hand_8	PF13833	129 - 177	9.5e-11	EF-hand domain pair
EF-hand_1	PF00036	152 - 177	8e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	3 cut(s)	242, 245, 442
AcuI	CTGAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	69
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	7 cut(s)	61, 111, 127, 187, 220, 349, 408
AluI	AGCT	7 cut(s)	61, 111, 127, 187, 220, 349, 408
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	7 cut(s)	13, 16, 19, 108, 117, 120, 390
AspLEI	GCGC	3 cut(s)	13, 87, 238
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	386
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	7 cut(s)	25, 28, 31, 120, 129, 132, 377
BccI	CCATC	4 cut(s)	266, 301, 488, 523
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	8 cut(s)	14, 17, 20, 109, 118, 121, 243, 391
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	8 cut(s)	15, 18, 21, 110, 119, 122, 244, 392
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	267, 346, 408
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	4 cut(s)	73, 105, 428, 460
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	177, 225, 450
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 483, 513
BseDI	CCNNGG	3 cut(s)	177, 225, 450
BseGI	GGATG	4 cut(s)	277, 282, 372, 423
BseMII	CTCAG	3 cut(s)	174, 341, 399
BseRI	GAGGAG	3 cut(s)	242, 305, 344
BseXI	GCAGC	7 cut(s)	25, 28, 31, 120, 129, 132, 377
BseYI	CCCAGC	2 cut(s)	280, 421
BshFI	GGCC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	242, 245, 442
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	3 cut(s)	175, 342, 398
BspHI	TCATGA	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	417
BsrBI	CCGCTC	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	177, 225, 450
Bst4CI	ACNGT	3 cut(s)	161, 167, 208
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	125, 240, 406
BstDEI	CTNAG	3 cut(s)	183, 350, 385
BstF5I	GGATG	4 cut(s)	277, 282, 372, 423
BstHHI	GCGC	3 cut(s)	13, 87, 238
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 114, 117, 242, 251, 390, 432, 441, 471
BstNSI	RCATGY	2 cut(s)	198, 478
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	7 cut(s)	25, 28, 31, 120, 129, 132, 377
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	4 cut(s)	277, 282, 372, 423
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	125, 240, 406
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	3 cut(s)	13, 87, 238
CviAII	CATG	5 cut(s)	114, 195, 466, 475, 526
DdeI	CTNAG	3 cut(s)	183, 350, 385
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	5 cut(s)	117, 198, 469, 478, 529
FaiI	YATR	9 cut(s)	52, 115, 196, 263, 372, 395, 467, 476, 527
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	5 cut(s)	113, 194, 465, 474, 525
FauI	CCCGC	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	8 cut(s)	14, 17, 20, 109, 118, 121, 243, 391
FokI	GGATG	4 cut(s)	284, 289, 379, 430
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	8 cut(s)	14, 17, 20, 109, 118, 121, 243, 391
GlaI	GCGC	3 cut(s)	12, 86, 237
GluI	GCNGC	8 cut(s)	14, 17, 20, 109, 118, 121, 243, 391
GsaI	CCCAGC	2 cut(s)	284, 425
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	3 cut(s)	13, 87, 238
Hin1II	CATG	5 cut(s)	117, 198, 469, 478, 529
Hin6I	GCGC	3 cut(s)	11, 85, 236
HinP1I	GCGC	3 cut(s)	11, 85, 236
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	4 cut(s)	97, 437, 469, 522
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	6 cut(s)	192, 212, 226, 259, 504, 521
Hpy188III	TCNNGA	3 cut(s)	69, 298, 526
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	161, 167, 208
HpyCH4V	TGCA	3 cut(s)	117, 393, 459
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 114, 117, 242, 251, 390, 432, 441, 471
HpyF3I	CTNAG	3 cut(s)	183, 350, 385
Hsp92II	CATG	5 cut(s)	117, 198, 469, 478, 529
HspAI	GCGC	3 cut(s)	11, 85, 236
LmnI	GCTCC	3 cut(s)	217, 346, 449
LpnPI	CCDG	8 cut(s)	113, 192, 266, 311, 372, 407, 412, 414
Lsp1109I	GCAGC	7 cut(s)	25, 28, 31, 120, 129, 132, 377
LweI	GCATC	3 cut(s)	267, 346, 408
MaeIII	GTNAC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	444
MboII	GAAGA	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	2 cut(s)	106, 446
MmeI	TCCRAC	2 cut(s)	125, 190
MseI	TTAA	1 cut(s)	410
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	9 cut(s)	19, 114, 117, 242, 251, 390, 432, 441, 471
NciI	CCSGG	1 cut(s)	179
NlaIII	CATG	5 cut(s)	117, 198, 469, 478, 529
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	2 cut(s)	198, 478
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	314
PciI	ACATGT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	469, 522
PkrI	GCNGC	8 cut(s)	15, 18, 21, 110, 119, 122, 244, 392
PleI	GAGTC	2 cut(s)	105, 445
PpsI	GAGTC	2 cut(s)	105, 445
PscI	ACATGT	1 cut(s)	194
PspFI	CCCAGC	2 cut(s)	280, 421
SalI	GTCGAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	8 cut(s)	14, 17, 20, 109, 118, 121, 243, 391
SchI	GAGTC	2 cut(s)	106, 446
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	3 cut(s)	267, 346, 408
Sse9I	AATT	1 cut(s)	47
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	242, 245, 442
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	161, 167, 208
TaqI	TCGA	4 cut(s)	35, 95, 480, 510
TasI	AATT	1 cut(s)	47
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	469, 522
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	7 cut(s)	13, 16, 19, 108, 117, 120, 390
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	504
XceI	RCATGY	2 cut(s)	198, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.