Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

28766750 .. 28768138

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAGAATAATACTCAACCTCAATCATCTTTCAAGAAACTTTGCCGGAAACTATCACCAAAGAGGGAAGATTCAGCCGGAGAGATACAACAACATAACAGTAGCAATGGTGAGGACAAGAACAGAGAGTTAGAGGCTGTTTTTTCTTACATGGATGCAAACAGAGACGGTAGAATCTCACCAGAAGAGCTTCAAAAGAGTTTCATGACATTGGGAGAACAATTGTCTGATGAAGAAGCCGTAGCTGCTGTTAGATTGTCTGATACGGACGGAGATGGGATGTTGGATTTTGAGGAATTTTCTCAGTTAATCAAAGTAGATGACGAAGAAGAGAAGAAGATGGAGCTCAAGGGAGCGTTTAGACTGTATATTGCAGAAGGTGAAGATTGTATTACACCAAGAAGCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGATTGTAGAGTTATGATTAGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTTTGCTCTTATGATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0009611 GO:0010035 GO:0010193 GO:0016020 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

177

Amino Acids

20.11

Weight (kDa)

4.66

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	43 - 104	1.6e-13	EF-hand domain pair
EF-hand_5	PF13202	44 - 69	2.5e-08	EF hand
EF-hand_8	PF13833	56 - 103	4.4e-10	EF-hand domain pair
EF-hand_7	PF13499	114 - 177	4.3e-08	EF-hand domain pair
EF-hand_8	PF13833	129 - 176	4.1e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	34, 194, 409
AluBI	AGCT	6 cut(s)	190, 245, 346, 405, 427, 504
AluI	AGCT	6 cut(s)	190, 245, 346, 405, 427, 504
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	4 cut(s)	48, 122, 171, 392
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	3 cut(s)	269, 334, 485
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmsI	GCATC	3 cut(s)	145, 405, 516
BpuEI	CTTGAG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	160, 285
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	46, 78
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	112
BssMI	GATC	1 cut(s)	478
Bst4CI	ACNGT	3 cut(s)	101, 170, 366
Bst6I	CTCTTC	2 cut(s)	180, 324
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	160, 285
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 424
BstV1I	GCAGC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	160, 285
BtsIMutI	CAGTG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	1 cut(s)	531
CviAII	CATG	2 cut(s)	151, 205
CviJI	RGCY	9 cut(s)	77, 137, 190, 239, 245, 346, 405, 427, 504
CviKI_1	RGCY	9 cut(s)	77, 137, 190, 239, 245, 346, 405, 427, 504
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	180, 324
EarI	CTCTTC	2 cut(s)	180, 324
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	2 cut(s)	154, 208
FaiI	YATR	6 cut(s)	96, 152, 206, 369, 464, 524
FatI	CATG	2 cut(s)	150, 204
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	167, 292
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	246
HapII	CCGG	2 cut(s)	46, 78
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	154, 208
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	2 cut(s)	403, 502
HinfI	GANTC	3 cut(s)	71, 174, 434
HpaII	CCGG	2 cut(s)	46, 78
HphI	GGTGA	4 cut(s)	48, 122, 171, 392
Hpy188I	TCNGA	2 cut(s)	229, 262
Hpy188III	TCNNGA	3 cut(s)	34, 205, 438
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	3 cut(s)	101, 170, 366
HpyCH4V	TGCA	2 cut(s)	158, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 424
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	154, 208
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	343, 353
LpnPI	CCDG	3 cut(s)	59, 91, 195
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	3 cut(s)	145, 405, 516
MaeI	CTAG	1 cut(s)	428
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MfeI	CAATTG	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	221, 296
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	30, 57, 106, 127, 286
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	308, 500
MspI	CCGG	2 cut(s)	46, 78
MunI	CAATTG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	245, 424
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	154, 208
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	71, 174, 434
PkrI	GCNGC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	308, 500
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	22, 192, 247, 348, 382, 407, 429, 506
SfaNI	GCATC	3 cut(s)	145, 405, 516
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	221, 296
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	101, 170, 366
TasI	AATT	2 cut(s)	221, 296
TfiI	GAWTC	3 cut(s)	71, 174, 434
Tru1I	TTAA	2 cut(s)	308, 500
Tru9I	TTAA	2 cut(s)	308, 500
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	17, 193, 246
TspGWI	ACGGA	2 cut(s)	281, 285
TspRI	CASTG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.