Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010642.1

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

31677 .. 33967

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010642.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggacaaactagcacaatacgagcgtgttttcaatcaattcgatggcaatggagacgggaagatatcacctttggagctccaacaatgtgtcgaggcaataggaggtgagctttcgtcgtcggaggctgaggcggcggtggagtacttggactccgacaaagacgggctgctgggtttcgacgacttcgttaagttcgttgaaggaggagatgaggaacagaaggtgagtgatttgagggaggcgtttaagatgtacgacatggatggatgtgggtgcattacgcccaaaagtttgaagaggatgctgagtagacttggtgaatccaggagtgttgatgagtgcaaggtcatgattgctaggtttgatctcaatggagatggtgtcctcaattttgatgagtttaagcctacaaagacactaaatctcactgccatcggatcattgcttgcagcattggaaattcaagcagctcaaacgtggtggcatgtacaccaaggagacaacatgtatgaggatgttttcgcaggtgaaaacaaggtcactggagttgtgtggtctaataagagagatatataccggactttgattggacaatgccagcttttgagtagggagggagtggctgaagcatggaaagggtttgcttatgccttggaagggatgtctaacaaagaggctctgcaaaagatcagaaactggaatggtttcgatgatgggtccacagtagaggctaggatcgaagacaaggaatttggagttattagaactccagtgtttagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

4.64

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	134, 137
AclWI	GGATC	2 cut(s)	448, 746
AcsI	RAATTY	2 cut(s)	462, 752
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	3 cut(s)	146, 257, 492
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	34, 203, 298, 467
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	79, 112, 473, 604
AluI	AGCT	4 cut(s)	79, 112, 473, 604
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	48, 495
AlwI	GGATC	2 cut(s)	448, 746
AlwNI	CAGNNNCTG	1 cut(s)	699
ApeKI	GCWGC	3 cut(s)	169, 452, 470
ApoI	RAATTY	2 cut(s)	462, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
Asp700I	GAANNNNTTC	1 cut(s)	707
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	5 cut(s)	60, 119, 238, 332, 542
AvaII	GGWCC	1 cut(s)	720
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	156, 464, 482
BccI	CCATC	5 cut(s)	38, 260, 374, 443, 710
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	48, 495
BfaI	CTAG	3 cut(s)	11, 360, 735
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	4 cut(s)	135, 170, 453, 471
BlsI	GCNGC	4 cut(s)	136, 171, 454, 472
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	567, 756
Bpu10I	CCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	496, 654
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	3 cut(s)	550, 704, 773
Bse3DI	GCAATG	2 cut(s)	55, 443
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	496, 654
BseGI	GGATG	5 cut(s)	271, 275, 309, 523, 669
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	2 cut(s)	55, 443
BseMII	CTCAG	2 cut(s)	120, 299
BseNI	ACTGG	3 cut(s)	550, 704, 773
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	156, 464, 482
BseYI	CCCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	2 cut(s)	48, 495
BsmBI	CGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	367, 440, 690, 738
BspACI	CCGC	2 cut(s)	134, 137
BspCNI	CTCAG	2 cut(s)	121, 300
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	448, 746
BsrDI	GCAATG	2 cut(s)	55, 443
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	550, 704, 773
BssECI	CCNNGG	2 cut(s)	496, 654
BssMI	GATC	4 cut(s)	367, 440, 690, 738
BssT1I	CCWWGG	2 cut(s)	496, 654
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	450, 602
BstDEI	CTNAG	2 cut(s)	129, 308
BstF5I	GGATG	5 cut(s)	271, 275, 309, 523, 669
BstKTI	GATC	4 cut(s)	370, 443, 693, 741
BstMAI	GTCTC	2 cut(s)	48, 495
BstMBI	GATC	4 cut(s)	367, 440, 690, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	491, 511
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	156, 464, 482
BstV2I	GAAGAC	1 cut(s)	750
BtsCI	GGATG	5 cut(s)	271, 275, 309, 523, 669
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	429, 543, 780
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	2 cut(s)	450, 602
CaiI	CAGNNNCTG	1 cut(s)	699
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	145, 256, 491
CspCI	CAANNNNNGTGG	2 cut(s)	464, 499
CviAII	CATG	5 cut(s)	262, 352, 488, 508, 633
CviQI	GTAC	3 cut(s)	145, 256, 491
DdeI	CTNAG	2 cut(s)	129, 308
DpnI	GATC	4 cut(s)	369, 442, 692, 740
DpnII	GATC	4 cut(s)	367, 440, 690, 738
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	496, 654
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	496, 654
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	496, 654
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	5 cut(s)	265, 355, 491, 511, 636
FaiI	YATR	9 cut(s)	263, 353, 489, 509, 513, 575, 577, 634, 651
FatI	CATG	5 cut(s)	261, 351, 487, 507, 632
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	135, 170, 453, 471
FokI	GGATG	5 cut(s)	278, 282, 316, 530, 676
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	135, 170, 453, 471
FspBI	CTAG	3 cut(s)	11, 360, 735
GluI	GCNGC	4 cut(s)	135, 170, 453, 471
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	567, 756
HapII	CCGG	1 cut(s)	580
Hin1II	CATG	5 cut(s)	265, 355, 491, 511, 636
HinfI	GANTC	2 cut(s)	152, 323
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	5 cut(s)	60, 119, 238, 332, 542
Hpy166II	GTNNAC	3 cut(s)	314, 493, 723
Hpy188I	TCNGA	4 cut(s)	124, 157, 440, 695
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	314, 493, 723
Hpy99I	CGWCG	3 cut(s)	121, 124, 185
HpyAV	CCTTC	3 cut(s)	197, 217, 653
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	4 cut(s)	279, 345, 452, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	129, 308
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	5 cut(s)	265, 355, 491, 511, 636
Kzo9I	GATC	4 cut(s)	367, 440, 690, 738
LmnI	GCTCC	2 cut(s)	76, 84
LpnPI	CCDG	8 cut(s)	158, 313, 340, 513, 531, 593, 614, 685
Lsp1109I	GCAGC	3 cut(s)	156, 464, 482
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	11, 360, 735
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	4 cut(s)	369, 442, 692, 740
MboI	GATC	4 cut(s)	367, 440, 690, 738
MboII	GAAGA	3 cut(s)	73, 310, 755
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	38, 391, 462, 752
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	102, 106, 180
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	3 cut(s)	192, 249, 405
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	4 cut(s)	367, 440, 690, 738
NlaIII	CATG	5 cut(s)	265, 355, 491, 511, 636
NlaIV	GGNNCC	1 cut(s)	721
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	2 cut(s)	491, 511
PagI	TCATGA	1 cut(s)	351
PaqCI	CACCTGC	1 cut(s)	518
PciI	ACATGT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	136, 171, 454, 472
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	720
PstNI	CAGNNNCTG	1 cut(s)	699
RsaI	GTAC	3 cut(s)	146, 257, 492
RsaNI	GTAC	3 cut(s)	145, 256, 491
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	192, 249, 405
SatI	GCNGC	4 cut(s)	135, 170, 453, 471
Sau3AI	GATC	4 cut(s)	367, 440, 690, 738
Sau96I	GGNCC	1 cut(s)	720
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	1 cut(s)	720
Sse9I	AATT	4 cut(s)	38, 391, 462, 752
SsiI	CCGC	2 cut(s)	134, 137
SspMI	CTAG	3 cut(s)	11, 360, 735
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	496, 654
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	5 cut(s)	42, 93, 180, 711, 741
TasI	AATT	4 cut(s)	38, 391, 462, 752
TatI	WGTACW	2 cut(s)	144, 490
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	192, 249, 405
Tru9I	TTAA	3 cut(s)	192, 249, 405
TscAI	CASTG	3 cut(s)	436, 550, 780
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	3 cut(s)	169, 452, 470
Tsp45I	GTSAC	1 cut(s)	541
TspRI	CASTG	3 cut(s)	436, 550, 780
VpaK11BI	GGWCC	1 cut(s)	720
XapI	RAATTY	2 cut(s)	462, 752
XceI	RCATGY	2 cut(s)	491, 511
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	3 cut(s)	11, 360, 735
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.