Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Reverse (-)

8886680 .. 8887556

Gene Structure 877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAGAGTAACAGAGGATTCGAGCGTGTGTTCAGCTACTTTGATGAAGATGGAGACGGGAAGATCTCACCCTCGGAGCTGAGAAACAGGCTAGGGTTGATGGGAGGAGAGATGCTGCAAAACGAAGCGGAGGTTGCGGTGGGGTTTTTGGACTCCGACGGGGATGGCTTGCTGGGTTTGGATGATCTTGTTGGGTTGATGGAAGGTGGAGAAGAGGAAGAGAAAATGAAGGGTTTAAGGGAGGCCTTTGAAGTGTATGATGAGGAGGGATGCGGGTTTATAACACCTAAGAGCTTGAAGAGAATGCTTAATAGATTGGGTGAGTCCAAGTCCATTGAGGAATGCAAGGTGATGATCAATCAATTTGATTTGAATGGGGATGGCCTCATCTGCTTTGAAGAGTTCACAGTAATGATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

4.29

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	7 - 30	5.1e-06	EF hand domain
EF-hand_7	PF13499	8 - 67	1.3e-08	EF-hand domain pair
EF-hand_5	PF13202	9 - 29	3.1e-06	EF hand
AIF-1	PF21008	71 - 139	5.7e-06	Allograft inflammatory factor 1
EF-hand_7	PF13499	78 - 139	7.2e-12	EF-hand domain pair
EF-hand_8	PF13833	94 - 139	2.7e-06	EF-hand domain pair
EF-hand_1	PF00036	114 - 140	5.6e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AciI	CCGC	3 cut(s)	128, 137, 273
AgsI	TTSAA	4 cut(s)	251, 298, 373, 398
AluBI	AGCT	3 cut(s)	36, 79, 294
AluI	AGCT	3 cut(s)	36, 79, 294
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	243, 382
ApeKI	GCWGC	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	60, 332, 361
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	5 cut(s)	44, 94, 158, 193, 374
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmsI	GCATC	3 cut(s)	102, 260, 405
BsaJI	CCNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	4 cut(s)	169, 187, 275, 385
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	120, 278
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	245, 384
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmI	GAATGC	2 cut(s)	309, 347
BsnI	GGCC	2 cut(s)	245, 384
Bsp143I	GATC	3 cut(s)	63, 184, 354
BspACI	CCGC	3 cut(s)	128, 137, 273
BspANI	GGCC	2 cut(s)	245, 384
BspCNI	CTCAG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	63, 184, 354
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	4 cut(s)	207, 213, 293, 393
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	80, 288
BstF5I	GGATG	4 cut(s)	169, 187, 275, 385
BstKTI	GATC	3 cut(s)	66, 187, 357
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	63, 184, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 390
BstV1I	GCAGC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	245, 384
BtsCI	GGATG	4 cut(s)	169, 187, 275, 385
Cac8I	GCNNGC	1 cut(s)	170
CviJI	RGCY	7 cut(s)	36, 79, 91, 168, 245, 294, 384
CviKI_1	RGCY	7 cut(s)	36, 79, 91, 168, 245, 294, 384
DdeI	CTNAG	2 cut(s)	80, 288
DpnI	GATC	3 cut(s)	65, 186, 356
DpnII	GATC	3 cut(s)	63, 184, 354
Eam1104I	CTCTTC	4 cut(s)	207, 213, 293, 393
EarI	CTCTTC	4 cut(s)	207, 213, 293, 393
Eco147I	AGGCCT	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	48
FaiI	YATR	2 cut(s)	258, 281
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	4 cut(s)	176, 194, 282, 392
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	245, 384
HinfI	GANTC	3 cut(s)	18, 152, 323
HphI	GGTGA	3 cut(s)	60, 332, 361
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	76, 157
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	197, 223
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	4, 118, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 390
HpyF3I	CTNAG	2 cut(s)	80, 288
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	63, 184, 354
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	2 cut(s)	73, 158
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	3 cut(s)	102, 260, 405
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	65, 186, 356
MboI	GATC	3 cut(s)	63, 184, 354
MboII	GAAGA	6 cut(s)	59, 73, 224, 230, 310, 410
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	146, 332
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	2 cut(s)	236, 309
MslI	CAYNNNNRTG	1 cut(s)	410
Mva1269I	GAATGC	2 cut(s)	309, 347
MwoI	GCNNNNNNNGC	2 cut(s)	134, 390
NdeII	GATC	3 cut(s)	63, 184, 354
PceI	AGGCCT	1 cut(s)	245
PctI	GAATGC	2 cut(s)	309, 347
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	2 cut(s)	146, 331
PpsI	GAGTC	2 cut(s)	146, 331
PsiI	TTATAA	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	236, 309
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	63, 184, 354
SchI	GAGTC	2 cut(s)	146, 332
SetI	ASST	7 cut(s)	38, 81, 135, 208, 289, 296, 351
SfaNI	GCATC	3 cut(s)	102, 260, 405
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	3 cut(s)	128, 137, 273
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	236, 309
Tru9I	TTAA	2 cut(s)	236, 309
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	60, 242
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.