Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

87515005 .. 87515476

Gene Structure 472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACAAACTAGCACAATACGAGCGTGTTTTCAATCAATTCGATGGCAATGGAGACAGGAAGATATCACCTTTGGAGCTCCAACAATGTGTCGAGGCAATAGGAGGTGAGCTTTCGTCGTCGGAGGCTGAGGCGGCGGTGGAGTACTTGGACTCCGACAAAGACGGGCTGCTGGGTTTCGACGACTTCGTTAAGTTCGTTGAAGGAGGAGATGAGGAAGAGAAGGTGAGTGATTTGAGGGAGGCGTTTAAGATGTACGACATGGATGGATGTGGGTGCATTACGCCCAAAAGTTTGAAGAGGATGCTGAGTAGACTTGGTGAATCCAGGAGTGTTGATGAGTGCAAGGTCATGATTGCTAGGTTTGATCTCAATGGAGATGGTGTCCTCAATTTTGATGAGTTTAAGGTCATGATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

140

Amino Acids

15.75

Weight (kDa)

4.34

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	8 - 67	1.2e-11	EF-hand domain pair
EF-hand_7	PF13499	77 - 139	2.5e-13	EF-hand domain pair
EF-hand_6	PF13405	78 - 107	5.4e-06	EF-hand domain
EF-hand_8	PF13833	92 - 140	1.4e-10	EF-hand domain pair
EF-hand_1	PF00036	114 - 139	6.2e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	134, 137
AfaI	GTAC	2 cut(s)	146, 257
AgsI	TTSAA	3 cut(s)	34, 203, 298
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	79, 112
AluI	AGCT	2 cut(s)	79, 112
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	169
AsuHPI	GGTGA	4 cut(s)	60, 119, 238, 332
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	38, 260, 374
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	11, 360
BisI	GCNGC	2 cut(s)	135, 170
BlsI	GCNGC	2 cut(s)	136, 171
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	271, 275, 309
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	120, 299
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	134, 137
BspCNI	CTCAG	2 cut(s)	121, 300
BspHI	TCATGA	2 cut(s)	351, 411
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	213, 293
BstDEI	CTNAG	2 cut(s)	129, 308
BstF5I	GGATG	3 cut(s)	271, 275, 309
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	271, 275, 309
CciI	TCATGA	2 cut(s)	351, 411
Csp6I	GTAC	2 cut(s)	145, 256
CviAII	CATG	3 cut(s)	262, 352, 412
CviJI	RGCY	4 cut(s)	79, 112, 128, 169
CviKI_1	RGCY	4 cut(s)	79, 112, 128, 169
CviQI	GTAC	2 cut(s)	145, 256
DdeI	CTNAG	2 cut(s)	129, 308
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	213, 293
EarI	CTCTTC	2 cut(s)	213, 293
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	265, 355, 415
FaiI	YATR	3 cut(s)	263, 353, 413
FatI	CATG	3 cut(s)	261, 351, 411
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	135, 170
FokI	GGATG	3 cut(s)	278, 282, 316
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	135, 170
FspBI	CTAG	2 cut(s)	11, 360
GluI	GCNGC	2 cut(s)	135, 170
GsaI	CCCAGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	265, 355, 415
HinfI	GANTC	2 cut(s)	152, 323
HphI	GGTGA	4 cut(s)	60, 119, 238, 332
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	124, 157
Hpy188III	TCNNGA	2 cut(s)	352, 412
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	3 cut(s)	121, 124, 185
HpyAV	CCTTC	2 cut(s)	197, 217
HpyCH4V	TGCA	2 cut(s)	279, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	129, 308
Hsp92II	CATG	3 cut(s)	265, 355, 415
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	76, 84
LpnPI	CCDG	4 cut(s)	43, 158, 313, 340
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	11, 360
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	73, 230, 310
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	38, 391
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	3 cut(s)	102, 106, 180
MseI	TTAA	3 cut(s)	192, 249, 405
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	265, 355, 415
PagI	TCATGA	2 cut(s)	351, 411
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	136, 171
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	146, 257
RsaNI	GTAC	2 cut(s)	145, 256
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	192, 249, 405
SatI	GCNGC	2 cut(s)	135, 170
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	73, 81, 109, 114, 228, 351, 365, 411
SfaNI	GCATC	1 cut(s)	294
Sse9I	AATT	2 cut(s)	38, 391
SsiI	CCGC	2 cut(s)	134, 137
SspMI	CTAG	2 cut(s)	11, 360
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	326
TaqI	TCGA	3 cut(s)	42, 93, 180
TasI	AATT	2 cut(s)	38, 391
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	192, 249, 405
Tru9I	TTAA	3 cut(s)	192, 249, 405
TseI	GCWGC	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	11, 360
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.