Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

90484584 .. 90492491

Gene Structure 7908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG687100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACAAACTAGCACAATACGAGCGTGTTTTCAATCAATTCGATGGCAATGGAGACGGGAAGATTTCACCTTTGGAGCTCCAACAATGTGTCGAGGCAATAGGAGGTGAGCTTTCGTCGTCGGAGTCTGTGGCTGCGGTGGAGTACTTGGACTCCGACAAAGACGGCCTGCTGGGTTTCGACGACTTCGTTAAGTTCGTTGAAGGAGGGGATGAGGAAGAGAAGGTGAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGATGGATGTGGGTGCATTACGCCCAAAAGTTTGAAGAGGATGCTGAGTAGACTTGGTGAATCCAGGAGTGTTGATGAGTGCAAGGTCATGATTGCTAGGTTTGATCTCAATGGAGATGGTGTCCTCAATTTTGAAGAGTTTAAGGTGAAGAGGTCGGAGGAGGTGAGGGAGTCGCGACGGCCGGGGAAGGCAGGGGGAGAAGAGAATGGGAGGGCGGCATCGGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

164

Amino Acids

18.18

Weight (kDa)

4.56

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	7 - 35	3.1e-06	EF-hand domain
EF-hand_7	PF13499	8 - 67	6.6e-11	EF-hand domain pair
EF-hand_5	PF13202	10 - 31	1.1e-07	EF hand
EF-hand_8	PF13833	19 - 68	6e-06	EF-hand domain pair
EF-hand_7	PF13499	77 - 136	1e-12	EF-hand domain pair
EF-hand_6	PF13405	78 - 107	7e-06	EF-hand domain
EF-hand_8	PF13833	92 - 137	1.4e-08	EF-hand domain pair
EF-hand_1	PF00036	114 - 136	6.3e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	439
AciI	CCGC	2 cut(s)	137, 479
AcoI	YGGCCR	1 cut(s)	443
AfaI	GTAC	2 cut(s)	146, 257
AgsI	TTSAA	4 cut(s)	34, 203, 298, 398
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	79, 112
AluI	AGCT	2 cut(s)	79, 112
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	166, 443
ApeKI	GCWGC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	6 cut(s)	60, 119, 238, 332, 421, 439
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	38, 260, 374
BceAI	ACGGC	2 cut(s)	181, 458
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	11, 360
BisI	GCNGC	2 cut(s)	135, 480
BlsI	GCNGC	2 cut(s)	136, 481
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	328, 447
BmrFI	CCNGG	2 cut(s)	328, 447
BmsI	GCATC	2 cut(s)	294, 491
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 369, 399
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	4 cut(s)	217, 271, 275, 309
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	437
BseX3I	CGGCCG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	168, 445
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	168, 445
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	367
Bsp68I	TCGCGA	1 cut(s)	439
BspACI	CCGC	2 cut(s)	137, 479
BspANI	GGCC	2 cut(s)	168, 445
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	5 cut(s)	213, 293, 393, 407, 459
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	4 cut(s)	217, 271, 275, 309
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	326, 445
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	121
BstZI	CGGCCG	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	168, 445
BtsCI	GGATG	4 cut(s)	217, 271, 275, 309
BtuMI	TCGCGA	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	170
CciI	TCATGA	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	145, 256
CviAII	CATG	2 cut(s)	262, 352
CviJI	RGCY	5 cut(s)	79, 112, 134, 168, 445
CviKI_1	RGCY	5 cut(s)	79, 112, 134, 168, 445
CviQI	GTAC	2 cut(s)	145, 256
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	443
EagI	CGGCCG	1 cut(s)	443
Eam1104I	CTCTTC	5 cut(s)	213, 293, 393, 407, 459
EarI	CTCTTC	5 cut(s)	213, 293, 393, 407, 459
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	2 cut(s)	265, 355
FaiI	YATR	2 cut(s)	263, 353
FatI	CATG	2 cut(s)	261, 351
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	135, 480
FokI	GGATG	4 cut(s)	224, 278, 282, 316
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	135, 480
FspBI	CTAG	2 cut(s)	11, 360
GluI	GCNGC	2 cut(s)	135, 480
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	168, 445
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	2 cut(s)	265, 355
HinfI	GANTC	4 cut(s)	125, 152, 323, 434
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	6 cut(s)	60, 119, 238, 332, 421, 439
Hpy166II	GTNNAC	2 cut(s)	314, 490
Hpy188I	TCNGA	3 cut(s)	124, 157, 421
Hpy188III	TCNNGA	2 cut(s)	352, 438
Hpy8I	GTNNAC	2 cut(s)	314, 490
Hpy99I	CGWCG	4 cut(s)	121, 124, 185, 444
HpyAV	CCTTC	3 cut(s)	197, 217, 445
HpyCH4V	TGCA	2 cut(s)	279, 345
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	265, 355
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	76, 84
LpnPI	CCDG	6 cut(s)	158, 182, 313, 340, 441, 459
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	294, 491
MaeI	CTAG	2 cut(s)	11, 360
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	6 cut(s)	73, 230, 310, 410, 424, 476
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	38, 391
MlyI	GAGTC	3 cut(s)	134, 146, 443
MmeI	TCCRAC	4 cut(s)	102, 106, 180, 399
MseI	TTAA	3 cut(s)	192, 249, 405
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	328, 447
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	439
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	265, 355
NruI	TCGCGA	1 cut(s)	439
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	136, 481
PleI	GAGTC	3 cut(s)	133, 146, 442
PpsI	GAGTC	3 cut(s)	133, 146, 442
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
RruI	TCGCGA	1 cut(s)	439
RsaI	GTAC	2 cut(s)	146, 257
RsaNI	GTAC	2 cut(s)	145, 256
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	192, 249, 405
SatI	GCNGC	2 cut(s)	135, 480
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	3 cut(s)	134, 146, 443
ScrFI	CCNGG	2 cut(s)	328, 447
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	294, 491
Sse9I	AATT	2 cut(s)	38, 391
SsiI	CCGC	2 cut(s)	137, 479
SspMI	CTAG	2 cut(s)	11, 360
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	326, 445
TaqI	TCGA	3 cut(s)	42, 93, 180
TasI	AATT	2 cut(s)	38, 391
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	192, 249, 405
Tru9I	TTAA	3 cut(s)	192, 249, 405
TseI	GCWGC	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	11, 360
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.