Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001530

Physical Location & Seq

Genomic Coordinates Forward (+)

87763885 .. 87770725

Gene Structure 6841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG662000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACAAACTAGCACAATACGAGCGTGTTTTCAATCAATTCGATGGCAATGGAGACGGGAAGATTTCACCTTTGGAGCTCCAACAATGTGTCGAGGCAATAGGAGGTGAGCTTTCGTCGTCGGAGTCTGTGGCTGCGGTGGAGTACTTGGACTCCGACAAAGACGGCCTGCTGGGTTTCGACGACTTCGTTAAGTTCGTTGAAGGAGGAGATGAGGAAGAGAAGGTGAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGATGGATGTGGGTGCATTACGCCCAAAAGTTTGAAGAGGATGCTGAGTAGACTTGGTGAATCCAGGAGTGTTGATGAGTGCAAGGTCATGATTGCTAGGTTTGATCTCAATGGAGATGCATTGGAAATTCAAGCAGCTCAAACGTGGTGGCATGTACACCAAGGAGACAACATGTATGAGGATGTTTTCGCAAGTGAAAACAAGGTCACTGGAGTTGTGTGGTCTAATAAGAGAGATGCCGGACTTTGGTTTGCTCCTCCAGAGTCAGGGGAGTGCAGGCTTGGCATTCAGGTGCTGCCAATTTCGCCTATCACTGAGGCCTTGTTCTCTAATGTTAGCTATGTTTGGGAAATTGTAGATTGGACAATGCCAGCTTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009611 GO:0016020 GO:0043167 GO:0043169 GO:0044464 GO:0046872 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

215

Amino Acids

24.1

Weight (kDa)

4.34

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	7 - 35	4.7e-06	EF-hand domain
EF-hand_7	PF13499	8 - 67	1.1e-10	EF-hand domain pair
EF-hand_5	PF13202	10 - 31	1.6e-07	EF hand
EF-hand_8	PF13833	19 - 68	1e-05	EF-hand domain pair
EF-hand_7	PF13499	77 - 127	3.9e-07	EF-hand domain pair
Glyco_hydro81C	PF17652	128 - 212	1.1e-16	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76640 AT1G76650 AT1G76650 AT1G76650
fragaria_vesca	FvH4_5g08060 FvH4_5g26790 FvH4_6g53150
malus_domestica	MD06G1143500.v1.1 MD09G1013600.v1.1 MD14G1158700.v1.1 MD17G1014200.v1.1
prunus_persica	Prupe.3G303600_v2.0.a1 Prupe.5G152700_v2.0.a1
pyrus_communis	pycom14g13240
rosa_chinensis	RchiOBHm_Chr2g0175201 RchiOBHm_Chr7g0190421 RchiOBHm_Chr7g0217701
rosa_laevigata	RLG00000002447 RLG00000002453 RLG00000004534 RLG00000022310
rosa_multiflora	Rmu_co8349129.1_g000001 Rmu_sc0000202.1_g000007 Rmu_sc0003920.1_g000012 Rmu_sc0010642.1_g000013 Rmu_sc0014718.1_g000001 Rmu_sc0017751.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077510 Rroxscaffold_3G00241780 Rroxscaffold_3G00264640
rosa_rugosa	Rorug02G0581300 Rorug06G0504700 Rorug07G0170500 Rorug07G0170700
rosa_samantha	Rh2AG662000 Rh2BG673200 Rh2BG674000 Rh2CG636400 Rh2DG687100 Rh7AG110400 Rh7AG311100 Rh7BG112900 Rh7BG302000 Rh7BG303000 Rh7CG115200 Rh7CG330100 Rh7DG113500 Rh7DG310900
rosa_wichuraiana	Rw2G054290 Rw7G009580 Rw7G026410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	3 cut(s)	146, 257, 420
AfiI	CCNNNNNNNGG	2 cut(s)	510, 530
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	34, 203, 298, 395
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	79, 112, 401, 603, 638
AluI	AGCT	5 cut(s)	79, 112, 401, 603, 638
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	48, 423
AlwNI	CAGNNNCTG	1 cut(s)	559
AoxI	GGCC	2 cut(s)	166, 582
ApeKI	GCWGC	3 cut(s)	134, 398, 559
ApoI	RAATTY	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	60, 119, 238, 332
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	121, 410, 546
BccI	CCATC	2 cut(s)	38, 260
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	48, 423
BfaI	CTAG	2 cut(s)	11, 360
BisI	GCNGC	3 cut(s)	135, 399, 560
BlsI	GCNGC	3 cut(s)	136, 400, 561
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	294, 370, 490
BpmI	CTGGAG	2 cut(s)	495, 507
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	510, 530
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	4 cut(s)	271, 275, 309, 451
BseLI	CCNNNNNNNGG	2 cut(s)	510, 530
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	299, 570
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	2 cut(s)	222, 510
BseXI	GCAGC	3 cut(s)	121, 410, 546
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	2 cut(s)	168, 584
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	510, 530
BsmAI	GTCTC	2 cut(s)	48, 423
BsmBI	CGTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	168, 584
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	168, 584
BspCNI	CTCAG	2 cut(s)	300, 571
BspHI	TCATGA	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	213, 293
BstAUI	TGTACA	1 cut(s)	418
BstC8I	GCNNGC	3 cut(s)	170, 542, 636
BstDEI	CTNAG	2 cut(s)	308, 579
BstF5I	GGATG	4 cut(s)	271, 275, 309, 451
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	48, 423
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	546, 568
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	2 cut(s)	419, 439
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	121, 410, 546
BsuRI	GGCC	2 cut(s)	168, 584
BtsCI	GGATG	4 cut(s)	271, 275, 309, 451
BtsIMutI	CAGTG	2 cut(s)	471, 576
Cac8I	GCNNGC	3 cut(s)	170, 542, 636
CaiI	CAGNNNCTG	1 cut(s)	559
CciI	TCATGA	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	145, 256, 419
CspCI	CAANNNNNGTGG	2 cut(s)	392, 427
CviAII	CATG	4 cut(s)	262, 352, 416, 436
CviJI	RGCY	9 cut(s)	79, 112, 134, 168, 401, 544, 584, 603, 638
CviKI_1	RGCY	9 cut(s)	79, 112, 134, 168, 401, 544, 584, 603, 638
CviQI	GTAC	3 cut(s)	145, 256, 419
DdeI	CTNAG	2 cut(s)	308, 579
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	213, 293
EarI	CTCTTC	2 cut(s)	213, 293
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	584
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	4 cut(s)	265, 355, 419, 439
FaiI	YATR	6 cut(s)	263, 353, 417, 437, 441, 606
FatI	CATG	4 cut(s)	261, 351, 415, 435
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	135, 399, 560
FokI	GGATG	4 cut(s)	278, 282, 316, 458
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	135, 399, 560
FspBI	CTAG	2 cut(s)	11, 360
GluI	GCNGC	3 cut(s)	135, 399, 560
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	495, 507
HaeIII	GGCC	2 cut(s)	168, 584
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	4 cut(s)	265, 355, 419, 439
HinfI	GANTC	4 cut(s)	125, 152, 323, 527
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	4 cut(s)	60, 119, 238, 332
Hpy166II	GTNNAC	2 cut(s)	314, 421
Hpy188I	TCNGA	2 cut(s)	124, 157
Hpy188III	TCNNGA	2 cut(s)	352, 524
Hpy8I	GTNNAC	2 cut(s)	314, 421
Hpy99I	CGWCG	3 cut(s)	121, 124, 185
HpyAV	CCTTC	2 cut(s)	197, 217
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	279, 345, 383, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	546, 568
HpyF3I	CTNAG	2 cut(s)	308, 579
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	265, 355, 419, 439
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	76, 84, 523
Lsp1109I	GCAGC	3 cut(s)	121, 410, 546
LweI	GCATC	3 cut(s)	294, 370, 490
MaeI	CTAG	2 cut(s)	11, 360
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	73, 230, 310
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	38, 390, 564, 615
MlyI	GAGTC	3 cut(s)	134, 146, 536
MmeI	TCCRAC	3 cut(s)	102, 106, 180
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	2 cut(s)	192, 249
MslI	CAYNNNNRTG	1 cut(s)	554
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	546, 568
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	265, 355, 419, 439
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	2 cut(s)	419, 439
PagI	TCATGA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	584
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	136, 400, 561
PleI	GAGTC	3 cut(s)	133, 146, 535
PpsI	GAGTC	3 cut(s)	133, 146, 535
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	146, 257, 420
RsaNI	GTAC	3 cut(s)	145, 256, 419
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	192, 249
SatI	GCNGC	3 cut(s)	135, 399, 560
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	3 cut(s)	134, 146, 536
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	3 cut(s)	294, 370, 490
SmiMI	CAYNNNNRTG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	38, 390, 564, 615
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	11, 360
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	424
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	42, 93, 180
TasI	AATT	4 cut(s)	38, 390, 564, 615
TatI	WGTACW	2 cut(s)	144, 418
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	192, 249
Tru9I	TTAA	2 cut(s)	192, 249
TscAI	CASTG	2 cut(s)	478, 583
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	134, 398, 559
Tsp45I	GTSAC	1 cut(s)	469
TspRI	CASTG	2 cut(s)	478, 583
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	2 cut(s)	419, 439
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	11, 360
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.